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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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ISMARA results GSE49485: Hypoxia transcriptome sequencing of rat brain.

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
Wrnip1_Mta3_Rcor1 4.63 small profile SeqLogo of Wrnip1_Mta3_Rcor1
Tbp 3.90 small profile SeqLogo of Tbp
Chd1_Pml 3.78 small profile SeqLogo of Chd1_Pml
Tfdp1_Wt1_Egr2 3.42 small profile SeqLogo of Tfdp1_Wt1_Egr2
Taf1 2.84 small profile SeqLogo of Taf1
Foxj3_Tbl1xr1 2.80 small profile SeqLogo of Foxj3_Tbl1xr1
Ybx1_Nfya_Nfyb_Nfyc_Cebpz 2.65 small profile SeqLogo of Ybx1_Nfya_Nfyb_Nfyc_Cebpz
Mecp2 2.57 small profile SeqLogo of Mecp2
Klf4_Sp3 2.34 small profile SeqLogo of Klf4_Sp3
Hic2 2.20 small profile SeqLogo of Hic2
Hcfc1_Six5_Smarcc2_Zfp143 2.16 small profile SeqLogo of Hcfc1_Six5_Smarcc2_Zfp143
Yy1_Yy2 2.04 small profile SeqLogo of Yy1_Yy2
Zfp110 2.03 small profile SeqLogo of Zfp110
Zfx_Zfp711 2.02 small profile SeqLogo of Zfx_Zfp711
Rfx3_Rfx1_Rfx4 2.01 small profile SeqLogo of Rfx3_Rfx1_Rfx4
Gtf2i_Gtf2f1 1.96 small profile SeqLogo of Gtf2i_Gtf2f1
Elf1_Elf2_Etv2_Elf4 1.96 small profile SeqLogo of Elf1_Elf2_Etv2_Elf4
Esrrb_Esrra 1.85 small profile SeqLogo of Esrrb_Esrra
Hoxb7 1.84 small profile SeqLogo of Hoxb7
Hic1 1.82 small profile SeqLogo of Hic1
Pou1f1 1.76 small profile SeqLogo of Pou1f1
Irf2_Irf1_Irf8_Irf9_Irf7 1.75 small profile SeqLogo of Irf2_Irf1_Irf8_Irf9_Irf7
Klf6_Patz1 1.67 small profile SeqLogo of Klf6_Patz1
Maz_Zfp281 1.66 small profile SeqLogo of Maz_Zfp281
Rfx2_Rfx7 1.59 small profile SeqLogo of Rfx2_Rfx7
Epas1_Bcl3 1.54 small profile SeqLogo of Epas1_Bcl3
Stat5a 1.52 small profile SeqLogo of Stat5a
Nrf1 1.50 small profile SeqLogo of Nrf1
Esr2 1.49 small profile SeqLogo of Esr2
Tfap2a 1.46 small profile SeqLogo of Tfap2a
Nhlh1 1.45 small profile SeqLogo of Nhlh1
Etv3_Erf_Fev_Elk4_Elk1_Elk3 1.42 small profile SeqLogo of Etv3_Erf_Fev_Elk4_Elk1_Elk3
Ar 1.40 small profile SeqLogo of Ar
Smad1 1.38 small profile SeqLogo of Smad1
Ahr 1.37 small profile SeqLogo of Ahr
Max_Mycn 1.30 small profile SeqLogo of Max_Mycn
Myf6 1.27 small profile SeqLogo of Myf6
Sin3a 1.22 small profile SeqLogo of Sin3a
Ebf1 1.22 small profile SeqLogo of Ebf1
Zbtb33_Chd2 1.21 small profile SeqLogo of Zbtb33_Chd2
Irx6_Irx2_Irx3 1.20 small profile SeqLogo of Irx6_Irx2_Irx3
Pou2f2_Pou3f1 1.19 small profile SeqLogo of Pou2f2_Pou3f1
Tgif1_Meis3 1.18 small profile SeqLogo of Tgif1_Meis3
Pparg_Rxrg 1.16 small profile SeqLogo of Pparg_Rxrg
Junb_Jund 1.16 small profile SeqLogo of Junb_Jund
Sox2 1.13 small profile SeqLogo of Sox2
Spi1 1.12 small profile SeqLogo of Spi1
Nr3c2 1.11 small profile SeqLogo of Nr3c2
Stat2 1.11 small profile SeqLogo of Stat2
Pax5 1.11 small profile SeqLogo of Pax5
Cebpe 1.11 small profile SeqLogo of Cebpe
Hnf4g 1.09 small profile SeqLogo of Hnf4g
Ctcfl_Ctcf 1.09 small profile SeqLogo of Ctcfl_Ctcf
Esr1 1.08 small profile SeqLogo of Esr1
Nr5a2 1.08 small profile SeqLogo of Nr5a2
Etv1_Etv5_Gabpa 1.08 small profile SeqLogo of Etv1_Etv5_Gabpa
Nfatc1 1.07 small profile SeqLogo of Nfatc1
Tcf7_Tcf7l2 1.06 small profile SeqLogo of Tcf7_Tcf7l2
Hey1_Myc_Mxi1 1.02 small profile SeqLogo of Hey1_Myc_Mxi1
Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2 1.01 small profile SeqLogo of Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2
Nfil3_Tef 1.01 small profile SeqLogo of Nfil3_Tef
E2f1 1.00 small profile SeqLogo of E2f1
Mybl1 0.99 small profile SeqLogo of Mybl1
Cpeb1 0.98 small profile SeqLogo of Cpeb1
Vsx1_Uncx_Prrx2_Shox2_Noto 0.98 small profile SeqLogo of Vsx1_Uncx_Prrx2_Shox2_Noto
Bptf 0.98 small profile SeqLogo of Bptf
Foxi1_Foxo1 0.95 small profile SeqLogo of Foxi1_Foxo1
E2f6 0.95 small profile SeqLogo of E2f6
Egr1 0.94 small profile SeqLogo of Egr1
Hoxa13 0.94 small profile SeqLogo of Hoxa13
Tcf21_Msc 0.93 small profile SeqLogo of Tcf21_Msc
Obox6_Obox5 0.92
small profile SeqLogo of Obox6_Obox5
Fosl2_Bach2 0.92 small profile SeqLogo of Fosl2_Bach2
Hoxc4_Arx_Otp_Esx1_Phox2b 0.92 small profile SeqLogo of Hoxc4_Arx_Otp_Esx1_Phox2b
Elf5 0.92 small profile SeqLogo of Elf5
Dmc1 0.91 small profile SeqLogo of Dmc1
Prdm1 0.91 small profile SeqLogo of Prdm1
Rest 0.90 small profile SeqLogo of Rest
Runx2_Bcl11a 0.90 small profile SeqLogo of Runx2_Bcl11a
Lhx2_Hoxc5 0.88 small profile SeqLogo of Lhx2_Hoxc5
Spic 0.88 small profile SeqLogo of Spic
Zfp384 0.88 small profile SeqLogo of Zfp384
Dbp 0.87 small profile SeqLogo of Dbp
Zic2 0.87 small profile SeqLogo of Zic2
Gcm2 0.86 small profile SeqLogo of Gcm2
Tlx1 0.86 small profile SeqLogo of Tlx1
Klf16_Sp8 0.86 small profile SeqLogo of Klf16_Sp8
Sox18_Sox12 0.85 small profile SeqLogo of Sox18_Sox12
Tbr1 0.84 small profile SeqLogo of Tbr1
Klf15 0.84 small profile SeqLogo of Klf15
Atf3 0.83 small profile SeqLogo of Atf3
Hif1a 0.83 small profile SeqLogo of Hif1a
Sp1 0.82 small profile SeqLogo of Sp1
Crem_Jdp2 0.82 small profile SeqLogo of Crem_Jdp2
Ascl2 0.82 small profile SeqLogo of Ascl2
Pou2f1 0.81 small profile SeqLogo of Pou2f1
Mzf1 0.80 small profile SeqLogo of Mzf1
Ets1 0.79 small profile SeqLogo of Ets1
Neurod2_Bhlha15_Bhlhe22_Olig1 0.78 small profile SeqLogo of Neurod2_Bhlha15_Bhlhe22_Olig1
Nfic_Nfib 0.78 small profile SeqLogo of Nfic_Nfib
Id4 0.78 small profile SeqLogo of Id4
Pitx1 0.76 small profile SeqLogo of Pitx1
Rad21_Smc3 0.76 small profile SeqLogo of Rad21_Smc3
Mnt 0.76 small profile SeqLogo of Mnt
Creb1 0.76 small profile SeqLogo of Creb1
Nr2f1_Nr4a1 0.74 small profile SeqLogo of Nr2f1_Nr4a1
Hlf 0.74 small profile SeqLogo of Hlf
Cux1 0.73 small profile SeqLogo of Cux1
Fli1 0.73 small profile SeqLogo of Fli1
Tgif2_Tgif2lx1_Tgif2lx2 0.73 small profile SeqLogo of Tgif2_Tgif2lx1_Tgif2lx2
Neurod1 0.72 small profile SeqLogo of Neurod1
Isl2 0.72 small profile SeqLogo of Isl2
Smarcc1_Fosl1 0.72 small profile SeqLogo of Smarcc1_Fosl1
Gata3 0.71 small profile SeqLogo of Gata3
Mafb 0.71 small profile SeqLogo of Mafb
Zfp263 0.71 small profile SeqLogo of Zfp263
Klf12_Klf14_Sp4 0.71 small profile SeqLogo of Klf12_Klf14_Sp4
Pitx2_Otx2 0.70 small profile SeqLogo of Pitx2_Otx2
Sox14 0.70 small profile SeqLogo of Sox14
Zfp524 0.70 small profile SeqLogo of Zfp524
Ddit3 0.69 small profile SeqLogo of Ddit3
Tcf7l1 0.69 small profile SeqLogo of Tcf7l1
Nfatc2 0.68 small profile SeqLogo of Nfatc2
Gsx1_Alx1_Mixl1_Lbx2 0.68 small profile SeqLogo of Gsx1_Alx1_Mixl1_Lbx2
Evx2 0.68 small profile SeqLogo of Evx2
Hsf2 0.68 small profile SeqLogo of Hsf2
Pou4f1_Pou6f1 0.67 small profile SeqLogo of Pou4f1_Pou6f1
Stat4_Stat3_Stat5b 0.67 small profile SeqLogo of Stat4_Stat3_Stat5b
Hes1 0.67 small profile SeqLogo of Hes1
Snai1_Zeb1_Snai2 0.67 small profile SeqLogo of Snai1_Zeb1_Snai2
Mnx1_Lhx6_Lmx1a 0.67 small profile SeqLogo of Mnx1_Lhx6_Lmx1a
Tfap2c 0.67 small profile SeqLogo of Tfap2c
Hbp1 0.66 small profile SeqLogo of Hbp1
Nfia 0.66 small profile SeqLogo of Nfia
Zbtb7b 0.66 small profile SeqLogo of Zbtb7b
Foxq1 0.66 small profile SeqLogo of Foxq1
Erg 0.66 small profile SeqLogo of Erg
Hsf1 0.65 small profile SeqLogo of Hsf1
Sox5_Sry 0.65 small profile SeqLogo of Sox5_Sry
Cenpb 0.64 small profile SeqLogo of Cenpb
Tfap4 0.64 small profile SeqLogo of Tfap4
Fos 0.63 small profile SeqLogo of Fos
Foxp2_Foxp3 0.63 small profile SeqLogo of Foxp2_Foxp3
Hoxb13 0.62 small profile SeqLogo of Hoxb13
Smad3 0.62 small profile SeqLogo of Smad3
Rela_Rel_Nfkb1 0.62 small profile SeqLogo of Rela_Rel_Nfkb1
Foxk1_Foxj1 0.62 small profile SeqLogo of Foxk1_Foxj1
Dlx1 0.62 small profile SeqLogo of Dlx1
Nfe2_Bach1_Mafk 0.62 small profile SeqLogo of Nfe2_Bach1_Mafk
Spib 0.61 small profile SeqLogo of Spib
Zfp219_Zfp740 0.61 small profile SeqLogo of Zfp219_Zfp740
Hsf4 0.61 small profile SeqLogo of Hsf4
Smad4 0.61 small profile SeqLogo of Smad4
Srf 0.61 small profile SeqLogo of Srf
Zbtb14 0.61
small profile SeqLogo of Zbtb14
Rreb1 0.61 small profile SeqLogo of Rreb1
Gli3_Zic1 0.60 small profile SeqLogo of Gli3_Zic1
Hoxa9_Hoxb9 0.60 small profile SeqLogo of Hoxa9_Hoxb9
Nkx3-2 0.60 small profile SeqLogo of Nkx3-2
Sp100 0.60 small profile SeqLogo of Sp100
Six6 0.59 small profile SeqLogo of Six6
Meox2 0.59 small profile SeqLogo of Meox2
Atf1_Creb5 0.59 small profile SeqLogo of Atf1_Creb5
Ppara 0.59 small profile SeqLogo of Ppara
Etv6 0.58 small profile SeqLogo of Etv6
Nr1i3 0.58 small profile SeqLogo of Nr1i3
Rfx5 0.58 small profile SeqLogo of Rfx5
Zbtb3 0.58 small profile SeqLogo of Zbtb3
Plag1 0.58 small profile SeqLogo of Plag1
Lhx5_Lmx1b_Lhx1 0.57 small profile SeqLogo of Lhx5_Lmx1b_Lhx1
Mbd2 0.57 small profile SeqLogo of Mbd2
Klf1 0.57 small profile SeqLogo of Klf1
Hinfp 0.56 small profile SeqLogo of Hinfp
Atoh1_Bhlhe23 0.56 small profile SeqLogo of Atoh1_Bhlhe23
Nr2f2 0.55 small profile SeqLogo of Nr2f2
Osr2_Osr1 0.55 small profile SeqLogo of Osr2_Osr1
Dlx5_Dlx4 0.55 small profile SeqLogo of Dlx5_Dlx4
Rarg 0.54 small profile SeqLogo of Rarg
Nfe2l2 0.54 small profile SeqLogo of Nfe2l2
Zbtb18 0.54
small profile SeqLogo of Zbtb18
Nkx2-3 0.54 small profile SeqLogo of Nkx2-3
Zic4 0.54 small profile SeqLogo of Zic4
Neurog2 0.54 small profile SeqLogo of Neurog2
Tbx15 0.54 small profile SeqLogo of Tbx15
Hnf1b 0.53 small profile SeqLogo of Hnf1b
Zbtb16 0.53 small profile SeqLogo of Zbtb16
Nfatc3 0.53 small profile SeqLogo of Nfatc3
Irf3 0.53 small profile SeqLogo of Irf3
Trp53 0.52
small profile SeqLogo of Trp53
Hoxd1 0.52 small profile SeqLogo of Hoxd1
Tbx5 0.52 small profile SeqLogo of Tbx5
Tbx2 0.52 small profile SeqLogo of Tbx2
Hoxa4 0.52 small profile SeqLogo of Hoxa4
Crx_Gsc 0.52 small profile SeqLogo of Crx_Gsc
Atf7_E4f1 0.52 small profile SeqLogo of Atf7_E4f1
Ebf3 0.51 small profile SeqLogo of Ebf3
Foxf2 0.51
small profile SeqLogo of Foxf2
Tead3_Tead4 0.51 small profile SeqLogo of Tead3_Tead4
Hoxb2_Dlx2 0.51 small profile SeqLogo of Hoxb2_Dlx2
Pitx3 0.51 small profile SeqLogo of Pitx3
Meox1 0.50 small profile SeqLogo of Meox1
Nr1i2 0.50 small profile SeqLogo of Nr1i2
Foxp1_Foxj2 0.50 small profile SeqLogo of Foxp1_Foxj2
Mybl2 0.50 small profile SeqLogo of Mybl2
Runx1 0.50 small profile SeqLogo of Runx1
Sox6_Sox9 0.49 small profile SeqLogo of Sox6_Sox9
Hoxa2 0.49
small profile SeqLogo of Hoxa2
Ezh2_Atf2_Ikzf1 0.49 small profile SeqLogo of Ezh2_Atf2_Ikzf1
Runx3 0.49 small profile SeqLogo of Runx3
Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec 0.48 small profile SeqLogo of Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec
Pbx1_Pbx3 0.48 small profile SeqLogo of Pbx1_Pbx3
Hnf1a 0.48 small profile SeqLogo of Hnf1a
Zbtb4 0.48 small profile SeqLogo of Zbtb4
Prrx1_Isx_Prrxl1 0.48 small profile SeqLogo of Prrx1_Isx_Prrxl1
Aire 0.47 small profile SeqLogo of Aire
Atf6 0.47 small profile SeqLogo of Atf6
Nkx2-1 0.47 small profile SeqLogo of Nkx2-1
Hsfy2 0.47 small profile SeqLogo of Hsfy2
Foxf1 0.47 small profile SeqLogo of Foxf1
Bcl6 0.47 small profile SeqLogo of Bcl6
Hmga1 0.47 small profile SeqLogo of Hmga1
Hoxa7_Hoxc8 0.47 small profile SeqLogo of Hoxa7_Hoxc8
Pou3f4 0.46 small profile SeqLogo of Pou3f4
Pou5f1 0.46 small profile SeqLogo of Pou5f1
Nkx2-9 0.46
small profile SeqLogo of Nkx2-9
Irx5 0.45 small profile SeqLogo of Irx5
Prop1 0.45 small profile SeqLogo of Prop1
Hoxb5 0.45 small profile SeqLogo of Hoxb5
Arid5b 0.45 small profile SeqLogo of Arid5b
Foxo6 0.44 small profile SeqLogo of Foxo6
Gfi1_Gfi1b 0.44 small profile SeqLogo of Gfi1_Gfi1b
Hdx 0.44 small profile SeqLogo of Hdx
Gata5 0.44 small profile SeqLogo of Gata5
Lhx8 0.43 small profile SeqLogo of Lhx8
Tfcp2 0.43 small profile SeqLogo of Tfcp2
Pbx2 0.43 small profile SeqLogo of Pbx2
Zkscan1 0.43 small profile SeqLogo of Zkscan1
Scrt1 0.43 small profile SeqLogo of Scrt1
Hmx1 0.43 small profile SeqLogo of Hmx1
Zfp148 0.43 small profile SeqLogo of Zfp148
Scrt2 0.42 small profile SeqLogo of Scrt2
Mef2d_Mef2a 0.42 small profile SeqLogo of Mef2d_Mef2a
Nkx2-2 0.42 small profile SeqLogo of Nkx2-2
Msx3 0.42 small profile SeqLogo of Msx3
Foxa3 0.42 small profile SeqLogo of Foxa3
Ikzf2 0.42 small profile SeqLogo of Ikzf2
Zfp784 0.42
small profile SeqLogo of Zfp784
Elf3 0.42 small profile SeqLogo of Elf3
Foxc2 0.41 small profile SeqLogo of Foxc2
Obox1 0.41
small profile SeqLogo of Obox1
Cebpb 0.41 small profile SeqLogo of Cebpb
Hmga2 0.41 small profile SeqLogo of Hmga2
Meis1 0.41 small profile SeqLogo of Meis1
Phox2a 0.41 small profile SeqLogo of Phox2a
Hes5_Hes7 0.41 small profile SeqLogo of Hes5_Hes7
Grhl1 0.41 small profile SeqLogo of Grhl1
En1 0.41 small profile SeqLogo of En1
Gata2_Gata1 0.40 small profile SeqLogo of Gata2_Gata1
Hoxa1 0.40 small profile SeqLogo of Hoxa1
Rxra 0.40 small profile SeqLogo of Rxra
Rhox11 0.40 small profile SeqLogo of Rhox11
Olig2_Olig3 0.40 small profile SeqLogo of Olig2_Olig3
Mafa 0.40 small profile SeqLogo of Mafa
Hnf4a 0.40 small profile SeqLogo of Hnf4a
Nr2c2 0.40 small profile SeqLogo of Nr2c2
Meis2 0.39 small profile SeqLogo of Meis2
Cebpa_Cebpg 0.39 small profile SeqLogo of Cebpa_Cebpg
Tfap2d 0.39 small profile SeqLogo of Tfap2d
Jun 0.39 small profile SeqLogo of Jun
Nkx6-1_Evx1_Hesx1 0.39 small profile SeqLogo of Nkx6-1_Evx1_Hesx1
Gli2 0.39 small profile SeqLogo of Gli2
Stat6 0.39 small profile SeqLogo of Stat6
Atf5 0.39 small profile SeqLogo of Atf5
Rorc_Nr1d1 0.39 small profile SeqLogo of Rorc_Nr1d1
Gcm1 0.39 small profile SeqLogo of Gcm1
Lef1 0.39 small profile SeqLogo of Lef1
Xbp1_Creb3l1 0.38 small profile SeqLogo of Xbp1_Creb3l1
Atf4 0.38 small profile SeqLogo of Atf4
Sp2 0.38 small profile SeqLogo of Sp2
Hoxa11_Hoxc12 0.38 small profile SeqLogo of Hoxa11_Hoxc12
Nr4a2 0.37 small profile SeqLogo of Nr4a2
Foxd1 0.37 small profile