GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxc13 Links NCBI RGD Ensembl	ENSRNOG00000028679	homeobox C13
Hoxd13 Links NCBI RGD Ensembl	ENSRNOG00000001588	homeo box D13

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_155955173 Show fit	0.21	ENSRNOT00000079345	AABR07004776.1 Links NCBI RGD Ensembl Show fit
chr9_+_67699379 Show fit	0.15	ENSRNOT00000091237 ENSRNOT00000088183	Ctla4 Links NCBI RGD Ensembl Show fit	cytotoxic T-lymphocyte-associated protein 4
chr3_-_165700489 Show fit	0.14	ENSRNOT00000017008	Zfp93 Links NCBI RGD Ensembl Show fit	zinc finger protein 93
chr11_-_29710849 Show fit	0.13	ENSRNOT00000029345	Krtap11-1 Links NCBI RGD Ensembl Show fit	keratin associated protein 11-1
chr4_-_159192526 Show fit	0.11	ENSRNOT00000026731	Kcna1 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily A member 1
chr10_-_87954055 Show fit	0.11	ENSRNOT00000018048	Krt34 Links NCBI RGD Ensembl Show fit	keratin 34
chr5_-_68139199 Show fit	0.09	ENSRNOT00000009987	Plppr1 Links NCBI RGD Ensembl Show fit	phospholipid phosphatase related 1
chrX_-_106607352 Show fit	0.07	ENSRNOT00000082858	AABR07040624.1 Links NCBI RGD Ensembl Show fit
chr10_-_88019967 Show fit	0.06	ENSRNOT00000047580	Krt36 Links NCBI RGD Ensembl Show fit	keratin 36
chr2_-_220838905 Show fit	0.06	ENSRNOT00000078914	AABR07013065.1 Links NCBI RGD Ensembl Show fit
chr6_-_41039437 Show fit	0.06	ENSRNOT00000005774	Trib2 Links NCBI RGD Ensembl Show fit	tribbles pseudokinase 2
chr4_-_82271893 Show fit	0.06	ENSRNOT00000075005	Hoxa7 Links NCBI RGD Ensembl Show fit	homeobox A7
chr7_-_143228060 Show fit	0.06	ENSRNOT00000088923 ENSRNOT00000012640	Krt75 Links NCBI RGD Ensembl Show fit	keratin 75
chr18_-_40218225 Show fit	0.05	ENSRNOT00000004723	Pggt1b Links NCBI RGD Ensembl Show fit	protein geranylgeranyltransferase type 1 subunit beta
chr8_+_96551245 Show fit	0.05	ENSRNOT00000039850	Bcl2a1 Links NCBI RGD Ensembl Show fit	BCL2-related protein A1
chr5_-_154332940 Show fit	0.05	ENSRNOT00000014458	Pithd1 Links NCBI RGD Ensembl Show fit	PITH domain containing 1
chr3_+_46185360 Show fit	0.04	ENSRNOT00000051344	LOC100361645 Links NCBI RGD Ensembl Show fit	LRRGT00075-like
chr10_+_108132105 Show fit	0.04	ENSRNOT00000072534	Cbx2 Links NCBI RGD Ensembl Show fit	chromobox 2
chr10_-_87248572 Show fit	0.04	ENSRNOT00000066637 ENSRNOT00000085677	Krt26 Links NCBI RGD Ensembl Show fit	keratin 26
chr1_+_236031988 Show fit	0.04	ENSRNOT00000016164	Pcsk5 Links NCBI RGD Ensembl Show fit	proprotein convertase subtilisin/kexin type 5
chr20_-_27578244 Show fit	0.04	ENSRNOT00000000708	Fam26d Links NCBI RGD Ensembl Show fit	family with sequence similarity 26, member D
chr16_+_2706428 Show fit	0.04	ENSRNOT00000077117	Il17rd Links NCBI RGD Ensembl Show fit	interleukin 17 receptor D
chr7_-_143453544 Show fit	0.03	ENSRNOT00000034450 ENSRNOT00000083956	Krt1 Links NCBI RGD Ensembl Show fit Krt5 Links NCBI RGD Ensembl Show fit	keratin 1 keratin 5
chr10_+_94192556 Show fit	0.03	ENSRNOT00000074007 ENSRNOT00000093039	Ace3 Links NCBI RGD Ensembl Show fit	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
chr7_-_3123297 Show fit	0.03	ENSRNOT00000061878	Rab5b Links NCBI RGD Ensembl Show fit	RAB5B, member RAS oncogene family
chr19_+_37025375 Show fit	0.03	ENSRNOT00000048385	Ces2g Links NCBI RGD Ensembl Show fit	carboxylesterase 2G
chr18_-_28017925 Show fit	0.03	ENSRNOT00000075420	Lrrtm2 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 2
chr4_-_82186190 Show fit	0.03	ENSRNOT00000071729	LOC100911622 Links NCBI RGD Ensembl Show fit	homeobox protein Hox-A7-like
chr17_-_84247038 Show fit	0.03	ENSRNOT00000068553	Nebl Links NCBI RGD Ensembl Show fit	nebulette
chr15_-_11912806 Show fit	0.03	ENSRNOT00000068171 ENSRNOT00000008759 ENSRNOT00000049771	Slc4a7 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 7
chr9_+_66058047 Show fit	0.03	ENSRNOT00000071819	Cdk15 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 15
chr1_+_154131926 Show fit	0.03	ENSRNOT00000035257	LOC102549852 Links NCBI RGD Ensembl Show fit	ferritin light chain 1-like
chr8_-_39734594 Show fit	0.02	ENSRNOT00000076872	Slc37a2 Links NCBI RGD Ensembl Show fit	solute carrier family 37 member 2
chr9_+_65534704 Show fit	0.02	ENSRNOT00000016730	Cflar Links NCBI RGD Ensembl Show fit	CASP8 and FADD-like apoptosis regulator
chr13_-_80702315 Show fit	0.02	ENSRNOT00000004577	Fmo4 Links NCBI RGD Ensembl Show fit	flavin containing monooxygenase 4
chr11_+_34316295 Show fit	0.02	ENSRNOT00000081834	Sim2 Links NCBI RGD Ensembl Show fit	single-minded family bHLH transcription factor 2
chr6_+_37144787 Show fit	0.02	ENSRNOT00000075503	Rad51ap2 Links NCBI RGD Ensembl Show fit	RAD51 associated protein 2
chr11_-_782954 Show fit	0.02	ENSRNOT00000040065	Epha3 Links NCBI RGD Ensembl Show fit	Eph receptor A3
chr2_-_43067956 Show fit	0.02	ENSRNOT00000090616	Gpbp1 Links NCBI RGD Ensembl Show fit	GC-rich promoter binding protein 1
chr13_-_45040593 Show fit	0.02	ENSRNOT00000004908	Lct Links NCBI RGD Ensembl Show fit	lactase
chr6_+_69971227 Show fit	0.02	ENSRNOT00000075349	Foxg1 Links NCBI RGD Ensembl Show fit	forkhead box G1
chr15_+_41643541 Show fit	0.02	ENSRNOT00000019646	Arl11 Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor like GTPase 11
chr20_+_37876650 Show fit	0.02	ENSRNOT00000001054	Gja1 Links NCBI RGD Ensembl Show fit	gap junction protein, alpha 1
chr14_+_17210733 Show fit	0.02	ENSRNOT00000003075	Cxcl10 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine ligand 10
chr6_+_123034304 Show fit	0.02	ENSRNOT00000078938	Cpg1 Links NCBI RGD Ensembl Show fit	candidate plasticity gene 1
chr10_-_88000423 Show fit	0.02	ENSRNOT00000076787 ENSRNOT00000046751 ENSRNOT00000091394	Krt32 Links NCBI RGD Ensembl Show fit	keratin 32
chr12_-_21760292 Show fit	0.02	ENSRNOT00000059592	LOC102550456 Links NCBI RGD Ensembl Show fit	TSC22 domain family protein 4-like
chr5_-_146795866 Show fit	0.02	ENSRNOT00000065640	Tlr12 Links NCBI RGD Ensembl Show fit	toll-like receptor 12
chr2_-_9472384 Show fit	0.02	ENSRNOT00000084295	Adgrv1 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor V1
chr5_-_16140896 Show fit	0.01	ENSRNOT00000029503	Xkr4 Links NCBI RGD Ensembl Show fit	XK related 4
chr5_+_157327657 Show fit	0.01	ENSRNOT00000022847	Pla2g2e Links NCBI RGD Ensembl Show fit	phospholipase A2, group IIE
chr17_+_70262363 Show fit	0.01	ENSRNOT00000048933	Fam208b Links NCBI RGD Ensembl Show fit	family with sequence similarity 208, member B
chr10_-_61232331 Show fit	0.01	ENSRNOT00000065045	Rap1gap2 Links NCBI RGD Ensembl Show fit	RAP1 GTPase activating protein 2
chr3_+_11476883 Show fit	0.01	ENSRNOT00000072241	Naif1 Links NCBI RGD Ensembl Show fit	nuclear apoptosis inducing factor 1
chr10_-_87437455 Show fit	0.01	ENSRNOT00000051080	Krt39 Links NCBI RGD Ensembl Show fit	keratin 39
chr8_+_122197027 Show fit	0.01	ENSRNOT00000013050	Ubp1 Links NCBI RGD Ensembl Show fit	upstream binding protein 1 (LBP-1a)
chr2_-_173800761 Show fit	0.01	ENSRNOT00000039524	Wdr49 Links NCBI RGD Ensembl Show fit	WD repeat domain 49
chr3_-_120373500 Show fit	0.01	ENSRNOT00000067727	Nphp1 Links NCBI RGD Ensembl Show fit	nephrocystin 1
chr9_+_79659251 Show fit	0.01	ENSRNOT00000021656	Xrcc5 Links NCBI RGD Ensembl Show fit	X-ray repair cross complementing 5
chr11_-_61470046 Show fit	0.01	ENSRNOT00000073436	LOC102553099 Links NCBI RGD Ensembl Show fit	N-alpha-acetyltransferase 50-like
chr2_+_54466280 Show fit	0.01	ENSRNOT00000033112	C6 Links NCBI RGD Ensembl Show fit	complement C6
chr19_-_19896421 Show fit	0.01	ENSRNOT00000020793	Heatr3 Links NCBI RGD Ensembl Show fit	HEAT repeat containing 3
chr20_+_11655967 Show fit	0.01	ENSRNOT00000064565	LOC690478 Links NCBI RGD Ensembl Show fit	similar to keratin associated protein 10-7
chr9_-_52238564 Show fit	0.01	ENSRNOT00000005073	Col5a2 Links NCBI RGD Ensembl Show fit	collagen type V alpha 2 chain
chr12_+_6403940 Show fit	0.01	ENSRNOT00000083484	B3glct Links NCBI RGD Ensembl Show fit	beta 3-glucosyltransferase
chrX_+_20216587 Show fit	0.01	ENSRNOT00000073114	AABR07037412.2 Links NCBI RGD Ensembl Show fit	FYVE, RhoGEF and PH domain-containing protein 1
chrX_-_77675487 Show fit	0.01	ENSRNOT00000042799	Cysltr1 Links NCBI RGD Ensembl Show fit	cysteinyl leukotriene receptor 1
chr7_+_107406962 Show fit	0.01	ENSRNOT00000093254	Phf20l1 Links NCBI RGD Ensembl Show fit	PHD finger protein 20-like protein 1
chr4_-_2201749 Show fit	0.01	ENSRNOT00000089327	Lmbr1 Links NCBI RGD Ensembl Show fit	limb development membrane protein 1
chr7_-_140437467 Show fit	0.01	ENSRNOT00000087181	Fkbp11 Links NCBI RGD Ensembl Show fit	FK506 binding protein 11
chr2_+_210880777 Show fit	0.01	ENSRNOT00000026237	Gnat2 Links NCBI RGD Ensembl Show fit	G protein subunit alpha transducin 2
chr11_+_45401403 Show fit	0.01	ENSRNOT00000002240	Tbc1d23 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 23
chr16_-_37177033 Show fit	0.01	ENSRNOT00000014015	Fbxo8 Links NCBI RGD Ensembl Show fit	F-box protein 8
chr10_+_84135116 Show fit	0.01	ENSRNOT00000031035	Hoxb7 Links NCBI RGD Ensembl Show fit	homeo box B7
chr8_+_115546712 Show fit	0.01	ENSRNOT00000079801	Dcaf1 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 1
chr1_-_43638161 Show fit	0.01	ENSRNOT00000024460	Ipcef1 Links NCBI RGD Ensembl Show fit	interaction protein for cytohesin exchange factors 1
chr19_-_19315357 Show fit	0.00	ENSRNOT00000018888	Cyld Links NCBI RGD Ensembl Show fit	CYLD lysine 63 deubiquitinase
chr1_-_219745654 Show fit	0.00	ENSRNOT00000054848	LOC689065 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC689065
chr9_-_43454078 Show fit	0.00	ENSRNOT00000023550	Tmem131 Links NCBI RGD Ensembl Show fit	transmembrane protein 131
chr6_-_105261549 Show fit	0.00	ENSRNOT00000009122	Synj2bp Links NCBI RGD Ensembl Show fit	synaptojanin 2 binding protein
chr17_+_87274944 Show fit	0.00	ENSRNOT00000073718	Etl4 Links NCBI RGD Ensembl Show fit	enhancer trap locus 4
chr2_+_180936688 Show fit	0.00	ENSRNOT00000016039	Asic5 Links NCBI RGD Ensembl Show fit	acid sensing ion channel subunit family member 5
chr8_+_115546893 Show fit	0.00	ENSRNOT00000018932	Dcaf1 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 1
chr1_+_261753364 Show fit	0.00	ENSRNOT00000076659	R3hcc1l Links NCBI RGD Ensembl Show fit	R3H domain and coiled-coil containing 1-like
chr4_-_78879294 Show fit	0.00	ENSRNOT00000084543	Igf2bp3 Links NCBI RGD Ensembl Show fit	insulin-like growth factor 2 mRNA binding protein 3
chr3_+_110574417 Show fit	0.00	ENSRNOT00000031231	Disp2 Links NCBI RGD Ensembl Show fit	dispatched RND transporter family member 2
chr8_+_17421557 Show fit	0.00	ENSRNOT00000030569	Chordc1 Links NCBI RGD Ensembl Show fit	cysteine and histidine rich domain containing 1
chr14_-_21553949 Show fit	0.00	ENSRNOT00000031642	Smr3b Links NCBI RGD Ensembl Show fit	submaxillary gland androgen regulated protein 3B
chr5_-_125345726 Show fit	0.00	ENSRNOT00000011244	LOC688684 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L32
chr1_-_225077079 Show fit	0.00	ENSRNOT00000074747	Uqcc3 Links NCBI RGD Ensembl Show fit	ubiquinol-cytochrome c reductase complex assembly factor 3
chr10_+_38918748 Show fit	0.00	ENSRNOT00000009999	Kif3a Links NCBI RGD Ensembl Show fit	kinesin family member 3a
chr13_+_27238767 Show fit	0.00	ENSRNOT00000003495	Serpinb11 Links NCBI RGD Ensembl Show fit	serpin family B member 11
chr3_+_160047296 Show fit	0.00	ENSRNOT00000051590	Pkig Links NCBI RGD Ensembl Show fit	cAMP-dependent protein kinase inhibitor gamma
chr6_+_99625306 Show fit	0.00	ENSRNOT00000008573	Plekhg3 Links NCBI RGD Ensembl Show fit	pleckstrin homology and RhoGEF domain containing G3
chr7_-_18634079 Show fit	0.00	ENSRNOT00000010031	Angptl4 Links NCBI RGD Ensembl Show fit	angiopoietin-like 4
chr10_-_56368360 Show fit	0.00	ENSRNOT00000019674	Slc35g3 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member G3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0045590	negative regulation of regulatory T cell differentiation(GO:0045590)
0.0	0.1	GO:0050975	sensory perception of touch(GO:0050975)
0.0	0.1	GO:0045074	interleukin-10 biosynthetic process(GO:0042091) regulation of interleukin-10 biosynthetic process(GO:0045074)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0030280	structural constituent of epidermis(GO:0030280)
0.0	0.1	GO:0004661	protein geranylgeranyltransferase activity(GO:0004661)