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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Elf3

Z-value: 0.42

Motif logo

Transcription factors associated with Elf3

Gene Symbol Gene ID Gene Info
ENSRNOG00000006330 E74-like factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Elf3rn6_v1_chr13_-_52088780_52088780-0.672.2e-01Click!

Activity profile of Elf3 motif

Sorted Z-values of Elf3 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr16_-_19791832 0.19 ENSRNOT00000040393
USH1 protein network component harmonin binding protein 1
chr10_-_64642292 0.17 ENSRNOT00000084670
active BCR-related
chr10_+_47930633 0.15 ENSRNOT00000003515
GRB2-related adaptor protein
chr5_-_169630340 0.14 ENSRNOT00000087043
potassium voltage-gated channel subfamily A regulatory beta subunit 2
chr3_+_177226417 0.13 ENSRNOT00000031328
opioid related nociceptin receptor 1
chr4_-_78342863 0.13 ENSRNOT00000049038
GTPase, IMAP family member 6
chr7_-_93826665 0.13 ENSRNOT00000011344
TNF receptor superfamily member 11B
chr20_-_27301952 0.13 ENSRNOT00000000438
solute carrier family 25 member 16
chr14_+_86652365 0.12 ENSRNOT00000077428
zinc finger, MIZ-type containing 2
chr8_-_128754514 0.12 ENSRNOT00000025019
C-X3-C motif chemokine receptor 1
chr1_-_43638161 0.11 ENSRNOT00000024460
interaction protein for cytohesin exchange factors 1
chr3_-_59688692 0.10 ENSRNOT00000078752
Sp3 transcription factor
chr12_+_38144855 0.10 ENSRNOT00000032274
hydroxycarboxylic acid receptor 1
chr4_+_51614676 0.09 ENSRNOT00000060494
ankyrin repeat and SOCS box containing 15
chr9_-_81864202 0.09 ENSRNOT00000084964
zinc finger protein 142
chr10_+_40553180 0.09 ENSRNOT00000087763
solute carrier family 36 member 1
chr14_+_109533792 0.09 ENSRNOT00000067690
ankyrin repeat domain-containing protein 29-like
chr13_+_105684420 0.09 ENSRNOT00000040543
G patch domain containing 2
chr19_+_25043680 0.09 ENSRNOT00000043971
adhesion G protein-coupled receptor L1
chr3_-_148932878 0.08 ENSRNOT00000013881
nucleolar protein 4-like
chr2_+_45668969 0.08 ENSRNOT00000014761
ENSRNOT00000071353
ADP-ribosylation factor like GTPase 15
chr10_-_16046033 0.08 ENSRNOT00000089460
cytoplasmic polyadenylation element binding protein 4
chr5_-_173653905 0.07 ENSRNOT00000038556
pleckstrin homology domain containing N1
chr2_-_204341676 0.07 ENSRNOT00000021713
solute carrier family 22, member 15
chr6_+_12415805 0.07 ENSRNOT00000022380
general transcription factor 2A subunit 1 like
chr10_-_85636902 0.07 ENSRNOT00000017241
polycomb group ring finger 2
chr8_+_48925604 0.07 ENSRNOT00000077445
DEAD-box helicase 6
chr1_-_205040755 0.07 ENSRNOT00000023574
C-terminal binding protein 2
chr2_+_207262934 0.07 ENSRNOT00000016833
protein phosphatase, Mg2+/Mn2+ dependent, 1J
chr18_-_30775401 0.07 ENSRNOT00000027128
solute carrier family 25 member 2
chr3_+_107142762 0.07 ENSRNOT00000006177
similar to CDNA sequence BC052040
chr1_-_215846911 0.07 ENSRNOT00000089171
insulin-like growth factor 2
chr14_+_33624390 0.07 ENSRNOT00000002907
aminoadipate-semialdehyde dehydrogenase
chr20_+_27954433 0.07 ENSRNOT00000064288
LIM zinc finger domain containing 1
chr7_-_66909470 0.06 ENSRNOT00000066381
protein phosphatase, Mg2+/Mn2+ dependent, 1H
chr7_-_117680004 0.06 ENSRNOT00000040422
solute carrier family 39 member 4
chr5_-_158439078 0.06 ENSRNOT00000025517
kelch domain containing 7A
chr1_-_4011161 0.06 ENSRNOT00000044778
syntaxin binding protein 5
chr14_+_84150908 0.06 ENSRNOT00000005516
dual specificity phosphatase 18
chr11_+_57430166 0.06 ENSRNOT00000093201
pleckstrin homology-like domain, family B, member 2
chrX_+_22247088 0.06 ENSRNOT00000079802
IQ motif and Sec7 domain 2
chr19_-_58735173 0.06 ENSRNOT00000030077
pecanex homolog 2 (Drosophila)
chr10_+_86337728 0.06 ENSRNOT00000085408
titin-cap
chr9_-_45206427 0.06 ENSRNOT00000042227
AF4/FMR2 family, member 3
chr7_-_98098268 0.06 ENSRNOT00000010361
F-box protein 32
chr10_+_55927223 0.06 ENSRNOT00000011523
potassium voltage-gated channel subfamily A regulatory beta subunit 3
chr1_-_198316882 0.06 ENSRNOT00000085304
ENSRNOT00000064985
TAO kinase 2
chr20_+_3363737 0.06 ENSRNOT00000079654
alpha tubulin acetyltransferase 1
chr16_+_78539489 0.06 ENSRNOT00000057897
CUB and Sushi multiple domains 1
chr10_+_17421075 0.05 ENSRNOT00000047011
serine/threonine kinase 10
chr3_-_162579201 0.05 ENSRNOT00000068328
zinc finger, MYND-type containing 8
chr10_+_73868943 0.05 ENSRNOT00000081012
tubulin, delta 1
chr1_-_4011511 0.05 ENSRNOT00000040559
syntaxin binding protein 5
chrX_+_134979646 0.05 ENSRNOT00000006035
SAM and SH3 domain containing 3
chr17_-_18592750 0.05 ENSRNOT00000065742
CAP, adenylate cyclase-associated protein, 2 (yeast)
chr14_+_38192446 0.05 ENSRNOT00000090242
nuclear transcription factor, X-box binding-like 1
chr4_-_51586881 0.05 ENSRNOT00000064983
IQ motif and ubiquitin domain containing
chr7_-_130151414 0.05 ENSRNOT00000010467
plexin B2
chr16_+_71058022 0.05 ENSRNOT00000066901
BCL2-associated athanogene 4
chr1_+_211351350 0.05 ENSRNOT00000082751
ENSRNOT00000030461
janus kinase and microtubule interacting protein 3
chr13_+_99136871 0.05 ENSRNOT00000078263
ENSRNOT00000004350
SDE2 telomere maintenance homolog
chr20_+_9948908 0.05 ENSRNOT00000001541
ubiquitin associated and SH3 domain containing, A
chr3_+_163570532 0.05 ENSRNOT00000010054
ADP ribosylation factor guanine nucleotide exchange factor 2
chr15_-_42898150 0.05 ENSRNOT00000030036
protein tyrosine kinase 2 beta
chr15_-_33218456 0.05 ENSRNOT00000017753
ajuba LIM protein
chr3_+_113918629 0.05 ENSRNOT00000078978
ENSRNOT00000037168
CTD small phosphatase like 2
chr14_-_5006594 0.05 ENSRNOT00000076571
zinc finger protein 326
chr7_-_122329443 0.04 ENSRNOT00000032232
megakaryoblastic leukemia (translocation) 1
chr17_-_27602934 0.04 ENSRNOT00000079298
ras responsive element binding protein 1
chr1_-_175586802 0.04 ENSRNOT00000071333

chr1_-_261179790 0.04 ENSRNOT00000074420
ENSRNOT00000072073
exosome component 1
chr2_+_12516702 0.04 ENSRNOT00000050072
transmembrane protein 161B
chr2_-_53300404 0.04 ENSRNOT00000088876
growth hormone receptor
chr1_-_89509343 0.04 ENSRNOT00000028637
FXYD domain-containing ion transport regulator 3
chr3_-_112174269 0.04 ENSRNOT00000067836
transmembrane protein 87A
chrX_-_1952111 0.04 ENSRNOT00000061140
jade family PHD finger 3
chr1_-_189549891 0.04 ENSRNOT00000019747
ERI1 exoribonuclease family member 2
chr10_+_104437648 0.04 ENSRNOT00000035001

chr19_+_9668186 0.04 ENSRNOT00000016563
CCR4-NOT transcription complex, subunit 1
chr4_-_183544850 0.04 ENSRNOT00000071407
DENN/MADD domain containing 5B
chr4_-_163214678 0.04 ENSRNOT00000091602
C-type lectin domain family 1, member A
chr3_-_63568464 0.04 ENSRNOT00000068494

chr18_+_30592794 0.04 ENSRNOT00000027133
protocadherin beta 22
chr9_-_110936631 0.04 ENSRNOT00000064431
F-box and leucine-rich repeat protein 17
chr1_-_219682287 0.04 ENSRNOT00000026092
ras homolog family member D
chr2_-_183582553 0.04 ENSRNOT00000014236
ADP-ribosylation factor interacting protein 1
chr19_+_30668602 0.04 ENSRNOT00000035084
ubiquitin specific peptidase 38
chr19_-_37528011 0.04 ENSRNOT00000059628
agouti related neuropeptide
chr1_+_215605404 0.04 ENSRNOT00000027454
synaptotagmin 8
chr15_-_56970365 0.04 ENSRNOT00000047192
leucine rich repeats and calponin homology domain containing 1
chr4_+_163162211 0.04 ENSRNOT00000082537
C-type lectin domain family 1, member B
chr4_+_167754525 0.04 ENSRNOT00000007889
ets variant 6
chr7_+_70753101 0.04 ENSRNOT00000090001
R3H domain containing 2
chr5_-_159119171 0.04 ENSRNOT00000074074
ENSRNOT00000075382
ENSRNOT00000074378
Rho guanine nucleotide exchange factor 10 like
chrX_-_115175299 0.04 ENSRNOT00000074322
doublecortin
chr4_+_78310379 0.04 ENSRNOT00000032802
GTPase, IMAP family member 9
chr11_+_84745904 0.03 ENSRNOT00000002617
kelch-like family member 6
chr9_+_121802673 0.03 ENSRNOT00000086534
YES proto-oncogene 1, Src family tyrosine kinase
chr18_-_399242 0.03 ENSRNOT00000045926
coagulation factor VIII
chr8_-_84632817 0.03 ENSRNOT00000076942
muscular LMNA-interacting protein
chr4_+_78371121 0.03 ENSRNOT00000059157
GTPase, IMAP family member 1
chr10_-_12916784 0.03 ENSRNOT00000004589
zinc finger protein 13
chr7_-_107616038 0.03 ENSRNOT00000088752
src-like adaptor
chr15_+_4240203 0.03 ENSRNOT00000010178
MSS51 mitochondrial translational activator
chr4_+_71652354 0.03 ENSRNOT00000022672
ENSRNOT00000022543
caspase 2
chr17_+_5225835 0.03 ENSRNOT00000022373
zinc finger CCHC-type containing 6
chr7_-_60825242 0.03 ENSRNOT00000009203
nucleoporin 107
chr10_-_85084850 0.03 ENSRNOT00000012462
TBK1 binding protein 1
chr10_+_45322248 0.03 ENSRNOT00000047268
tripartite motif-containing 11
chr8_+_33239139 0.03 ENSRNOT00000011589
Rho GTPase activating protein 32
chr17_-_75886523 0.03 ENSRNOT00000046266
USP6 N-terminal like
chr17_+_11683862 0.03 ENSRNOT00000024766
msh homeobox 2
chr7_+_130326600 0.03 ENSRNOT00000084776
ENSRNOT00000055808
non-SMC condensin II complex, subunit H2
chr8_+_42443442 0.03 ENSRNOT00000015986
von Willebrand factor A domain containing 5A
chr13_-_37287458 0.03 ENSRNOT00000003391
insulin induced gene 2
chr7_+_122818975 0.03 ENSRNOT00000000206
E1A binding protein p300
chr3_-_111266542 0.03 ENSRNOT00000031672
INO80 complex subunit
chr6_+_3012804 0.03 ENSRNOT00000061980
Rho guanine nucleotide exchange factor 33
chr10_+_39109522 0.03 ENSRNOT00000010968
interferon regulatory factor 1
chr17_-_46794845 0.03 ENSRNOT00000077910
ENSRNOT00000090663
ENSRNOT00000078331
engulfment and cell motility 1
chr3_-_92242318 0.03 ENSRNOT00000007018
tripartite motif-containing 44
chr2_+_18937458 0.03 ENSRNOT00000022377
transmembrane protein 167A
chr14_-_18076907 0.03 ENSRNOT00000003472
prostate androgen-regulated mucin-like protein 1
chr10_-_98018014 0.03 ENSRNOT00000005367
FAM20A, golgi associated secretory pathway pseudokinase
chr5_+_60250546 0.03 ENSRNOT00000017707
zinc finger CCHC-type containing 7
chr13_+_88606894 0.03 ENSRNOT00000048692
SH2 domain containing 1B
chr13_-_78957183 0.03 ENSRNOT00000076954
ENSRNOT00000003851
kelch-like family member 20
chr17_-_63145577 0.03 ENSRNOT00000074389
GTP binding protein 4
chr10_+_85608544 0.03 ENSRNOT00000092122
MLLT6, PHD finger domain containing
chr8_+_49378644 0.03 ENSRNOT00000007588
junction adhesion molecule like
chr3_-_147487170 0.03 ENSRNOT00000077580
family with sequence similarity 110, member A
chr9_-_44560837 0.03 ENSRNOT00000090870
microtubule interacting and trafficking domain containing 1
chr15_-_52288893 0.03 ENSRNOT00000016209
family with sequence similarity 160, member B2
chr10_-_65437143 0.03 ENSRNOT00000017264
NIMA-related kinase 8
chr18_-_28017925 0.03 ENSRNOT00000075420
leucine rich repeat transmembrane neuronal 2
chr8_-_71533069 0.03 ENSRNOT00000021863
thyroid hormone receptor interactor 4
chr19_-_10360310 0.03 ENSRNOT00000087100
katanin regulatory subunit B1
chrX_+_65566047 0.03 ENSRNOT00000092103
hephaestin
chr1_-_85368031 0.03 ENSRNOT00000026778
PAF1 homolog, Paf1/RNA polymerase II complex component
chr12_+_1889331 0.02 ENSRNOT00000066281
Rho/Rac guanine nucleotide exchange factor 18
chr12_-_31249118 0.02 ENSRNOT00000058586
ENSRNOT00000073105
adhesion G protein-coupled receptor D1
chr1_+_64046377 0.02 ENSRNOT00000085010
transmembrane channel-like 4
chrX_-_116792707 0.02 ENSRNOT00000049482
angiomotin
chrX_+_105500173 0.02 ENSRNOT00000040476
armadillo repeat containing, X-linked 4
chr13_-_82753438 0.02 ENSRNOT00000075948
ATPase Na+/K+ transporting subunit beta 1
chr14_+_83343330 0.02 ENSRNOT00000089198
phosphatidylserine decarboxylase
chr14_+_5928737 0.02 ENSRNOT00000071877
ENSRNOT00000040985
ENSRNOT00000074889
macrophage activation 2 like
chr3_-_112125290 0.02 ENSRNOT00000011155
ENSRNOT00000085132
VPS39 HOPS complex subunit
chr7_+_117963740 0.02 ENSRNOT00000075405
COMM domain-containing protein 5
chr12_+_11179329 0.02 ENSRNOT00000001302
zinc finger protein 394
chr9_-_100479868 0.02 ENSRNOT00000022748
PAS domain containing serine/threonine kinase
chrX_+_70440059 0.02 ENSRNOT00000003946
arrestin 3
chr17_-_13586554 0.02 ENSRNOT00000041371
SECIS binding protein 2
chr13_+_52662996 0.02 ENSRNOT00000047682
troponin T2, cardiac type
chr10_-_70802782 0.02 ENSRNOT00000045867
chemokine (C-C motif) ligand 6
chr4_-_145948996 0.02 ENSRNOT00000043476
ATPase plasma membrane Ca2+ transporting 2
chr16_+_53957858 0.02 ENSRNOT00000013078
FSHD region gene 1
chr7_-_30397930 0.02 ENSRNOT00000010414
ARP6 actin-related protein 6 homolog
chr4_+_62380914 0.02 ENSRNOT00000029845
transmembrane protein 140
chr14_-_86796378 0.02 ENSRNOT00000092021
myosin IG
chr8_+_12823155 0.02 ENSRNOT00000011008
sestrin 3
chr10_+_110346453 0.02 ENSRNOT00000054928
testis expressed 19.1
chr2_-_185303610 0.02 ENSRNOT00000093479
ENSRNOT00000046286
protease, serine 48
chr12_-_48663143 0.02 ENSRNOT00000082809
FIC domain containing
chr2_+_127625683 0.02 ENSRNOT00000015474
heat shock protein 4-like
chr4_-_118595580 0.02 ENSRNOT00000024436
annexin A4
chr11_-_4332255 0.02 ENSRNOT00000087133
cell adhesion molecule 2
chr7_+_70987861 0.02 ENSRNOT00000072906
nuclear envelope integral membrane protein 1
chr1_+_63842277 0.02 ENSRNOT00000087957
ENSRNOT00000080820
leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3A
chr1_+_261180007 0.02 ENSRNOT00000072181
zinc finger, DHHC-type containing 16
chr7_-_60309878 0.02 ENSRNOT00000007610
similar to RIKEN cDNA 9530003J23
chr4_-_170092848 0.02 ENSRNOT00000072147
histone cluster 2, H4
chr16_-_10661528 0.02 ENSRNOT00000085012
family with sequence similarity 35, member A
chr3_-_15278645 0.02 ENSRNOT00000032204
tubulin tyrosine ligase like11
chr1_-_157461588 0.02 ENSRNOT00000068402
ankyrin repeat domain 42
chr3_-_48535909 0.02 ENSRNOT00000008148
fibroblast activation protein, alpha
chr6_+_94636222 0.02 ENSRNOT00000005846
dishevelled associated activator of morphogenesis 1
chr6_+_109939345 0.02 ENSRNOT00000013560
intraflagellar transport 43
chr10_-_34166599 0.02 ENSRNOT00000003246
tripartite motif-containing 41
chr7_+_117773948 0.02 ENSRNOT00000021673
leucine rich repeat containing 14
chr4_-_77747070 0.02 ENSRNOT00000009247
zinc finger protein 746
chr5_-_2882668 0.02 ENSRNOT00000049741
telomeric repeat binding factor 1
chr12_+_23514981 0.02 ENSRNOT00000001937
Prkr interacting protein 1 (IL11 inducible)
chrX_+_24891156 0.01 ENSRNOT00000071173
WWC family member 3
chr15_+_18399733 0.01 ENSRNOT00000061158
family with sequence similarity 107, member A
chr15_+_18399515 0.01 ENSRNOT00000071273
family with sequence similarity 107, member A
chr1_+_189550354 0.01 ENSRNOT00000083153
exonuclease NEF-sp
chr15_+_34270648 0.01 ENSRNOT00000026333
ring finger protein 31
chr15_-_34469350 0.01 ENSRNOT00000067536
adenylate cyclase 4
chr12_-_45182974 0.01 ENSRNOT00000001503
TAO kinase 3
chr5_+_120498883 0.01 ENSRNOT00000007859
leptin receptor overlapping transcript
chr1_-_191007503 0.01 ENSRNOT00000023262
immunoglobulin superfamily, member 6
chr7_-_60341264 0.01 ENSRNOT00000007747
lysozyme 2
chr15_+_87704340 0.01 ENSRNOT00000034987
sciellin
chr1_+_221735517 0.01 ENSRNOT00000028628
ENSRNOT00000044866
splicing factor 1
chr3_+_138974871 0.01 ENSRNOT00000012524
SCP2 sterol-binding domain containing 1
chr18_-_786674 0.01 ENSRNOT00000021955
centrin 1
chr5_+_172986291 0.01 ENSRNOT00000022900
NAD kinase
chr13_+_99005142 0.01 ENSRNOT00000004293
acyl-CoA binding domain containing 3
chr10_+_12046541 0.01 ENSRNOT00000081191
MEFV, pyrin innate immunity regulator

Network of associatons between targets according to the STRING database.

First level regulatory network of Elf3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0043314 negative regulation of neutrophil degranulation(GO:0043314)
0.0 0.1 GO:0042489 negative regulation of odontogenesis of dentin-containing tooth(GO:0042489)
0.0 0.1 GO:1904059 regulation of locomotor rhythm(GO:1904059)
0.0 0.1 GO:0043137 DNA replication, removal of RNA primer(GO:0043137)
0.0 0.1 GO:0002282 microglial cell activation involved in immune response(GO:0002282)
0.0 0.1 GO:0034224 cellular response to zinc ion starvation(GO:0034224)
0.0 0.1 GO:0035995 detection of muscle stretch(GO:0035995)
0.0 0.1 GO:0071929 alpha-tubulin acetylation(GO:0071929)
0.0 0.1 GO:0019072 viral genome packaging(GO:0019072) viral RNA genome packaging(GO:0019074)
0.0 0.0 GO:2000537 regulation of cGMP-mediated signaling(GO:0010752) regulation of B cell chemotaxis(GO:2000537) positive regulation of B cell chemotaxis(GO:2000538)
0.0 0.0 GO:0014735 regulation of muscle atrophy(GO:0014735)
0.0 0.1 GO:0070995 NADPH oxidation(GO:0070995)
0.0 0.1 GO:0014878 response to electrical stimulus involved in regulation of muscle adaptation(GO:0014878)
0.0 0.1 GO:1903758 regulation of transcription from RNA polymerase II promoter by histone modification(GO:1903756) negative regulation of transcription from RNA polymerase II promoter by histone modification(GO:1903758)
0.0 0.1 GO:0000066 mitochondrial ornithine transport(GO:0000066)
0.0 0.1 GO:0015808 L-alanine transport(GO:0015808)
0.0 0.1 GO:0060136 embryonic process involved in female pregnancy(GO:0060136)
0.0 0.1 GO:0048386 positive regulation of retinoic acid receptor signaling pathway(GO:0048386)
0.0 0.0 GO:0007597 blood coagulation, intrinsic pathway(GO:0007597)
0.0 0.0 GO:1903691 positive regulation of wound healing, spreading of epidermal cells(GO:1903691)
0.0 0.0 GO:0000973 posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery(GO:0000973)
0.0 0.0 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)
0.0 0.1 GO:0035331 negative regulation of hippo signaling(GO:0035331)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0005760 gamma DNA polymerase complex(GO:0005760)
0.0 0.0 GO:0044609 DBIRD complex(GO:0044609)
0.0 0.1 GO:0097427 microtubule bundle(GO:0097427)
0.0 0.1 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.0 0.0 GO:0032937 SREBP-SCAP-Insig complex(GO:0032937)
0.0 0.1 GO:0001739 sex chromatin(GO:0001739)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0016890 site-specific endodeoxyribonuclease activity, specific for altered base(GO:0016890)
0.0 0.1 GO:0005302 L-tyrosine transmembrane transporter activity(GO:0005302)
0.0 0.1 GO:0019960 C-X3-C chemokine binding(GO:0019960)
0.0 0.1 GO:0004985 opioid receptor activity(GO:0004985)
0.0 0.1 GO:0004468 lysine N-acetyltransferase activity, acting on acetyl phosphate as donor(GO:0004468)
0.0 0.1 GO:0051373 FATZ binding(GO:0051373)
0.0 0.0 GO:0050265 RNA uridylyltransferase activity(GO:0050265)
0.0 0.0 GO:0004903 growth hormone receptor activity(GO:0004903)