GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Gtf2i | rn6_v1_chr12_+_25450286_25450286 | 0.95 | 1.3e-02 | Click! |
Gtf2f1 | rn6_v1_chr9_+_10033011_10033011 | 0.93 | 2.0e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_6679878 Show fit | 3.17 |
ENSRNOT00000075989
ENSRNOT00000067875 |
secreted phosphoprotein 1 |
|
chr20_+_5535432 Show fit | 1.94 |
ENSRNOT00000040859
|
synaptic Ras GTPase activating protein 1 |
|
chr15_+_108908607 Show fit | 1.77 |
ENSRNOT00000089455
|
Zic family member 2 |
|
chr8_-_98738446 Show fit | 1.54 |
ENSRNOT00000019860
|
Zic family member 1 |
|
chr20_+_5067330 Show fit | 1.48 |
ENSRNOT00000037482
|
lymphocyte antigen 6 complex, locus G6E |
|
chr12_-_17186679 Show fit | 1.47 |
ENSRNOT00000001730
|
UNC homeobox |
|
chrX_-_124464963 Show fit | 1.28 |
ENSRNOT00000036472
ENSRNOT00000077697 |
transmembrane protein 255A |
|
chr1_+_226435979 Show fit | 1.24 |
ENSRNOT00000048704
ENSRNOT00000036232 ENSRNOT00000035576 ENSRNOT00000036180 ENSRNOT00000036168 ENSRNOT00000047964 ENSRNOT00000036283 ENSRNOT00000007429 |
synaptotagmin 7 |
|
chr12_-_38782010 Show fit | 1.16 |
ENSRNOT00000001813
|
WD repeat domain 66 |
|
chr1_-_101046208 Show fit | 1.10 |
ENSRNOT00000091711
|
proline rich 12 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 3.1 | GO:0006710 | androgen catabolic process(GO:0006710) |
0.1 | 2.7 | GO:0050771 | negative regulation of axonogenesis(GO:0050771) |
0.1 | 2.4 | GO:1905145 | acetylcholine receptor signaling pathway(GO:0095500) signal transduction involved in cellular response to ammonium ion(GO:1903831) response to acetylcholine(GO:1905144) cellular response to acetylcholine(GO:1905145) |
0.3 | 2.0 | GO:0035726 | common myeloid progenitor cell proliferation(GO:0035726) |
0.4 | 1.8 | GO:1900224 | positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry(GO:1900224) |
0.5 | 1.5 | GO:1990926 | short-term synaptic potentiation(GO:1990926) |
0.3 | 1.4 | GO:0070094 | positive regulation of glucagon secretion(GO:0070094) |
0.2 | 1.4 | GO:0021759 | globus pallidus development(GO:0021759) |
0.2 | 1.4 | GO:0099525 | presynaptic dense core granule exocytosis(GO:0099525) |
0.0 | 1.4 | GO:0030866 | cortical actin cytoskeleton organization(GO:0030866) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.0 | 2.4 | GO:0030027 | lamellipodium(GO:0030027) |
0.2 | 1.8 | GO:0098831 | presynaptic active zone cytoplasmic component(GO:0098831) |
0.0 | 1.7 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.1 | 1.3 | GO:0017146 | NMDA selective glutamate receptor complex(GO:0017146) |
0.1 | 1.2 | GO:0032009 | early phagosome(GO:0032009) |
0.1 | 1.2 | GO:1902711 | GABA-A receptor complex(GO:1902711) |
0.0 | 1.2 | GO:0032590 | dendrite membrane(GO:0032590) |
0.0 | 1.2 | GO:0031519 | PcG protein complex(GO:0031519) |
0.1 | 1.1 | GO:0005766 | primary lysosome(GO:0005766) azurophil granule(GO:0042582) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.1 | 4.1 | GO:0050840 | extracellular matrix binding(GO:0050840) |
0.0 | 2.0 | GO:1902936 | phosphatidylinositol bisphosphate binding(GO:1902936) |
0.1 | 1.7 | GO:0030548 | acetylcholine receptor regulator activity(GO:0030548) neurotransmitter receptor regulator activity(GO:0099602) |
0.3 | 1.5 | GO:0031697 | beta-1 adrenergic receptor binding(GO:0031697) |
0.1 | 1.5 | GO:0001206 | transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001206) |
0.1 | 1.4 | GO:0017091 | AU-rich element binding(GO:0017091) |
0.2 | 1.3 | GO:0030160 | GKAP/Homer scaffold activity(GO:0030160) |
0.1 | 1.3 | GO:0048407 | platelet-derived growth factor binding(GO:0048407) |
0.0 | 1.2 | GO:0004890 | GABA-A receptor activity(GO:0004890) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.1 | 2.6 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 1.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.5 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.0 | 1.4 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 1.4 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 1.4 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.3 | PID NOTCH PATHWAY | Notch signaling pathway |
0.1 | 1.2 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 1.1 | ST GA12 PATHWAY | G alpha 12 Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.1 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
0.0 | 2.0 | REACTOME PI3K AKT ACTIVATION | Genes involved in PI3K/AKT activation |
0.0 | 1.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 1.6 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.0 | 1.4 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.1 | 1.3 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 1.3 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.1 | 1.2 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 1.1 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.0 | 1.0 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |