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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Lhx8
Z-value: 0.43
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Transcription factors associated with Lhx8
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Lhx8 | rn6_v1_chr2_-_260596777_260596777 | -0.47 | 4.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr1_-_48891130 Show fit | 0.26 |
ENSRNOT00000083884
|
|
|
| chr2_-_147819335 Show fit | 0.14 |
ENSRNOT00000057909
|
ankyrin repeat and ubiquitin domain containing 1 |
|
| chr1_+_64740487 Show fit | 0.14 |
ENSRNOT00000081213
|
zinc finger protein 679-like |
|
| chr15_-_44442875 Show fit | 0.13 |
ENSRNOT00000017939
|
gonadotropin releasing hormone 1 |
|
| chr5_+_6373583 Show fit | 0.13 |
ENSRNOT00000084749
|
|
|
| chr7_-_82059247 Show fit | 0.11 |
ENSRNOT00000087177
|
R-spondin 2 |
|
| chr1_-_49844547 Show fit | 0.11 |
ENSRNOT00000086127
ENSRNOT00000077423 ENSRNOT00000089439 ENSRNOT00000090521 |
|
|
| chr7_-_40316532 Show fit | 0.10 |
ENSRNOT00000083347
|
similar to RIKEN cDNA C430008C19 |
|
| chr2_-_170460754 Show fit | 0.10 |
ENSRNOT00000013009
|
SLIT and NTRK-like family, member 3 |
|
| chr10_+_65552897 Show fit | 0.09 |
ENSRNOT00000056217
|
sperm associated antigen 5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Lhx8
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0042489 | negative regulation of odontogenesis of dentin-containing tooth(GO:0042489) |
| 0.0 | 0.1 | GO:2000354 | regulation of ovarian follicle development(GO:2000354) |
| 0.0 | 0.1 | GO:1904428 | negative regulation of tubulin deacetylation(GO:1904428) |
| 0.0 | 0.1 | GO:0050975 | sensory perception of touch(GO:0050975) |
| 0.0 | 0.1 | GO:0051562 | negative regulation of mitochondrial calcium ion concentration(GO:0051562) |
| 0.0 | 0.0 | GO:0002343 | peripheral B cell selection(GO:0002343) B cell affinity maturation(GO:0002344) |
| 0.0 | 0.0 | GO:0034421 | post-translational protein acetylation(GO:0034421) |
| 0.0 | 0.0 | GO:0010034 | response to acetate(GO:0010034) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:1990005 | granular vesicle(GO:1990005) |
| 0.0 | 0.1 | GO:0097441 | basilar dendrite(GO:0097441) |
| 0.0 | 0.1 | GO:0061689 | tricellular tight junction(GO:0061689) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.0 | 0.1 | GO:0004699 | calcium-independent protein kinase C activity(GO:0004699) |
| 0.0 | 0.1 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
| 0.0 | 0.0 | GO:0005128 | erythropoietin receptor binding(GO:0005128) |
| 0.0 | 0.0 | GO:0008384 | IkappaB kinase activity(GO:0008384) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | REACTOME HORMONE LIGAND BINDING RECEPTORS | Genes involved in Hormone ligand-binding receptors |