GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Maff Links NCBI RGD Ensembl	ENSRNOG00000012886	MAF bZIP transcription factor F

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Maff	rn6_v1_chr7_+_120580743_120580743	0.38	5.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_+_19714324 Show fit	0.14	ENSRNOT00000072303	RGD1559588 Links NCBI RGD Ensembl Show fit	similar to cell surface receptor FDFACT
chr2_-_14701903 Show fit	0.09	ENSRNOT00000051895	Cox7c Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 7C
chr8_+_128829680 Show fit	0.09	ENSRNOT00000025279	Mobp Links NCBI RGD Ensembl Show fit	myelin-associated oligodendrocyte basic protein
chr14_+_34389991 Show fit	0.08	ENSRNOT00000002953	Pdcl2 Links NCBI RGD Ensembl Show fit	phosducin-like 2
chr18_+_74006046 Show fit	0.08	ENSRNOT00000086400	AABR07032622.1 Links NCBI RGD Ensembl Show fit
chr18_-_28454756 Show fit	0.08	ENSRNOT00000040091	Spata24 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 24
chr12_-_50404550 Show fit	0.08	ENSRNOT00000073072	Crybb1 Links NCBI RGD Ensembl Show fit	crystallin, beta B1
chr7_-_29171783 Show fit	0.07	ENSRNOT00000079235	Mybpc1 Links NCBI RGD Ensembl Show fit	myosin binding protein C, slow type
chr13_+_52854031 Show fit	0.06	ENSRNOT00000013738 ENSRNOT00000086004	Tmem9 Links NCBI RGD Ensembl Show fit	transmembrane protein 9
chr10_-_13168217 Show fit	0.06	ENSRNOT00000087768	Elob Links NCBI RGD Ensembl Show fit	elongin B
chr20_+_6351458 Show fit	0.06	ENSRNOT00000091731	Cdkn1a Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 1A
chr2_-_198439454 Show fit	0.06	ENSRNOT00000028780	Fcgr1a Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor Ia
chr1_+_264507985 Show fit	0.06	ENSRNOT00000085811	Pax2 Links NCBI RGD Ensembl Show fit	paired box 2
chrX_+_13441558 Show fit	0.06	ENSRNOT00000030170	RGD1561661 Links NCBI RGD Ensembl Show fit	similar to Ferritin light chain (Ferritin L subunit)
chr16_+_19881122 Show fit	0.05	ENSRNOT00000060404	Dda1 Links NCBI RGD Ensembl Show fit	DET1 and DDB1 associated 1
chrX_-_123788898 Show fit	0.05	ENSRNOT00000009123	Akap14 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 14
chr1_-_175676699 Show fit	0.05	ENSRNOT00000030474	Lyve1 Links NCBI RGD Ensembl Show fit	lymphatic vessel endothelial hyaluronan receptor 1
chr1_-_225128740 Show fit	0.05	ENSRNOT00000026897	Rom1 Links NCBI RGD Ensembl Show fit	retinal outer segment membrane protein 1
chr15_+_33596301 Show fit	0.04	ENSRNOT00000022563	Il25 Links NCBI RGD Ensembl Show fit	interleukin 25
chr14_+_42402081 Show fit	0.04	ENSRNOT00000092933	Bend4 Links NCBI RGD Ensembl Show fit	BEN domain containing 4
chr1_+_236580034 Show fit	0.04	ENSRNOT00000074939	Gcnt1 Links NCBI RGD Ensembl Show fit	glucosaminyl (N-acetyl) transferase 1, core 2
chr13_-_36101411 Show fit	0.04	ENSRNOT00000074471	Tmem37 Links NCBI RGD Ensembl Show fit	transmembrane protein 37
chr1_-_89483988 Show fit	0.03	ENSRNOT00000028603	Fxyd7 Links NCBI RGD Ensembl Show fit	FXYD domain-containing ion transport regulator 7
chr16_+_20027348 Show fit	0.03	ENSRNOT00000034589	Fam129c Links NCBI RGD Ensembl Show fit	family with sequence similarity 129, member C
chr16_-_20800646 Show fit	0.03	ENSRNOT00000083281	Comp Links NCBI RGD Ensembl Show fit	cartilage oligomeric matrix protein
chr4_-_157294047 Show fit	0.03	ENSRNOT00000005601	Eno2 Links NCBI RGD Ensembl Show fit	enolase 2
chr14_-_33031282 Show fit	0.03	ENSRNOT00000043244	LOC103693375 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L39
chr9_-_95290931 Show fit	0.03	ENSRNOT00000025300	Dnajb3 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member B3
chr9_+_20251521 Show fit	0.03	ENSRNOT00000005535	LOC100911625 Links NCBI RGD Ensembl Show fit	gamma-enolase-like
chr3_-_11410732 Show fit	0.03	ENSRNOT00000034930	RGD1561113 Links NCBI RGD Ensembl Show fit	similar to Hypothetical UPF0184 protein C9orf16 homolog
chr9_-_82154266 Show fit	0.03	ENSRNOT00000024283	Cryba2 Links NCBI RGD Ensembl Show fit	crystallin, beta A2
chr6_-_86822094 Show fit	0.03	ENSRNOT00000006531	Fkbp3 Links NCBI RGD Ensembl Show fit	FK506 binding protein 3
chr15_+_28028521 Show fit	0.03	ENSRNOT00000089631	AC114343.1 Links NCBI RGD Ensembl Show fit
chr1_+_48273611 Show fit	0.03	ENSRNOT00000022254 ENSRNOT00000022068	Slc22a1 Links NCBI RGD Ensembl Show fit	solute carrier family 22 member 1
chr18_+_55666027 Show fit	0.02	ENSRNOT00000045950	RGD1305184 Links NCBI RGD Ensembl Show fit	similar to CDNA sequence BC023105
chr3_-_148407778 Show fit	0.02	ENSRNOT00000011262	Foxs1 Links NCBI RGD Ensembl Show fit	forkhead box S1
chr1_-_85317968 Show fit	0.02	ENSRNOT00000026891	Gmfg Links NCBI RGD Ensembl Show fit	glia maturation factor, gamma
chr7_+_51794173 Show fit	0.02	ENSRNOT00000043774	Otogl Links NCBI RGD Ensembl Show fit	otogelin-like
chr10_-_74001895 Show fit	0.02	ENSRNOT00000005658	Vmp1 Links NCBI RGD Ensembl Show fit	vacuole membrane protein 1
chrX_-_10772633 Show fit	0.02	ENSRNOT00000035153	Ube2q2l Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2Q family member 2-like
chr4_-_21920651 Show fit	0.02	ENSRNOT00000066211	Tmem243 Links NCBI RGD Ensembl Show fit	transmembrane protein 243
chr8_-_109576353 Show fit	0.02	ENSRNOT00000010320	Ppp2r3a Links NCBI RGD Ensembl Show fit	protein phosphatase 2, regulatory subunit B'', alpha
chr3_-_122920684 Show fit	0.02	ENSRNOT00000028818	Cpxm1 Links NCBI RGD Ensembl Show fit	carboxypeptidase X (M14 family), member 1
chr16_-_19349080 Show fit	0.02	ENSRNOT00000038494	Hsh2d Links NCBI RGD Ensembl Show fit	hematopoietic SH2 domain containing
chr19_-_25288335 Show fit	0.02	ENSRNOT00000050214	Nanos3 Links NCBI RGD Ensembl Show fit	nanos C2HC-type zinc finger 3
chr10_+_56187020 Show fit	0.02	ENSRNOT00000046490	Tp53 Links NCBI RGD Ensembl Show fit	tumor protein p53
chr19_-_43848937 Show fit	0.02	ENSRNOT00000044844	Ldhd Links NCBI RGD Ensembl Show fit	lactate dehydrogenase D
chr1_+_88955135 Show fit	0.02	ENSRNOT00000083550	Prodh2 Links NCBI RGD Ensembl Show fit	proline dehydrogenase 2
chr10_-_63240332 Show fit	0.02	ENSRNOT00000005125	Blmh Links NCBI RGD Ensembl Show fit	bleomycin hydrolase
chr7_+_91384187 Show fit	0.01	ENSRNOT00000005828	Utp23 Links NCBI RGD Ensembl Show fit	UTP23, small subunit processome component
chr5_-_40237591 Show fit	0.01	ENSRNOT00000011393	Fut9 Links NCBI RGD Ensembl Show fit	fucosyltransferase 9
chr1_-_88826302 Show fit	0.01	ENSRNOT00000028275	Lrfn3 Links NCBI RGD Ensembl Show fit	leucine rich repeat and fibronectin type III domain containing 3
chr6_-_26281300 Show fit	0.01	ENSRNOT00000078750	RGD1560110 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4930548H24
chr6_-_49089855 Show fit	0.01	ENSRNOT00000006526	Tpo Links NCBI RGD Ensembl Show fit	thyroid peroxidase
chr8_-_1450138 Show fit	0.01	ENSRNOT00000008062	Aasdhppt Links NCBI RGD Ensembl Show fit	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
chr10_+_87808493 Show fit	0.01	ENSRNOT00000065405	LOC680428 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC680428
chr2_+_189582991 Show fit	0.01	ENSRNOT00000022627	Rab13 Links NCBI RGD Ensembl Show fit	RAB13, member RAS oncogene family
chr6_+_52702544 Show fit	0.01	ENSRNOT00000014252	Efcab10 Links NCBI RGD Ensembl Show fit	EF-hand calcium binding domain 10
chr1_-_170073473 Show fit	0.01	ENSRNOT00000085141	Olr196 Links NCBI RGD Ensembl Show fit	olfactory receptor 196
chr1_+_87009730 Show fit	0.01	ENSRNOT00000027537	Ech1 Links NCBI RGD Ensembl Show fit	enoyl-CoA hydratase 1
chr7_+_121361415 Show fit	0.01	ENSRNOT00000067904	Tab1 Links NCBI RGD Ensembl Show fit	TGF-beta activated kinase 1/MAP3K7 binding protein 1
chr10_-_43931094 Show fit	0.01	ENSRNOT00000039778	Olr1415 Links NCBI RGD Ensembl Show fit	olfactory receptor 1415
chr13_-_79899479 Show fit	0.01	ENSRNOT00000035815	RGD1309106 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein
chr6_+_102392828 Show fit	0.01	ENSRNOT00000089162	Rdh12 Links NCBI RGD Ensembl Show fit	retinol dehydrogenase 12 (all-trans/9-cis/11-cis)
chr13_-_111765944 Show fit	0.01	ENSRNOT00000073041	Syt14 Links NCBI RGD Ensembl Show fit	synaptotagmin 14
chr1_-_221448570 Show fit	0.01	ENSRNOT00000075165	Zfpl1 Links NCBI RGD Ensembl Show fit	zinc finger protein-like 1
chr1_+_114046478 Show fit	0.01	ENSRNOT00000032254	Siglech Links NCBI RGD Ensembl Show fit	sialic acid binding Ig-like lectin H
chr1_+_219390523 Show fit	0.01	ENSRNOT00000054852	Gpr152 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 152
chr5_+_48224994 Show fit	0.01	ENSRNOT00000068028	Rragd Links NCBI RGD Ensembl Show fit	Ras-related GTP binding D
chr1_+_275957698 Show fit	0.01	ENSRNOT00000021041	Tectb Links NCBI RGD Ensembl Show fit	tectorin beta
chr10_+_74002151 Show fit	0.01	ENSRNOT00000005661	Ptrh2 Links NCBI RGD Ensembl Show fit	peptidyl-tRNA hydrolase 2
chr1_-_62114672 Show fit	0.01	ENSRNOT00000072607	AABR07001923.1 Links NCBI RGD Ensembl Show fit
chr19_-_49510901 Show fit	0.01	ENSRNOT00000082929 ENSRNOT00000079969	LOC687399 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC687399
chr1_-_73226777 Show fit	0.01	ENSRNOT00000025080	Ncr1 Links NCBI RGD Ensembl Show fit	natural cytotoxicity triggering receptor 1
chrX_-_45806198 Show fit	0.01	ENSRNOT00000066663	Prrg1 Links NCBI RGD Ensembl Show fit	proline rich and Gla domain 1
chr16_-_14382641 Show fit	0.01	ENSRNOT00000018723	Ghitm Links NCBI RGD Ensembl Show fit	growth hormone inducible transmembrane protein
chr6_-_78817641 Show fit	0.01	ENSRNOT00000072117	AABR07064392.1 Links NCBI RGD Ensembl Show fit
chr1_+_221448661 Show fit	0.01	ENSRNOT00000072493	LOC100910252 Links NCBI RGD Ensembl Show fit	sororin-like
chr5_+_127571114 Show fit	0.00	ENSRNOT00000016557	Slc1a7 Links NCBI RGD Ensembl Show fit	solute carrier family 1 member 7
chr3_-_72289310 Show fit	0.00	ENSRNOT00000038250	Rtn4rl2 Links NCBI RGD Ensembl Show fit	reticulon 4 receptor-like 2
chr9_+_47386626 Show fit	0.00	ENSRNOT00000021270	Slc9a2 Links NCBI RGD Ensembl Show fit	solute carrier family 9 member A2
chr18_+_40883224 Show fit	0.00	ENSRNOT00000039733	Lvrn Links NCBI RGD Ensembl Show fit	laeverin
chr5_+_127571312 Show fit	0.00	ENSRNOT00000090817 ENSRNOT00000077808 ENSRNOT00000072263	Slc1a7 Links NCBI RGD Ensembl Show fit	solute carrier family 1 member 7
chr2_+_52397175 Show fit	0.00	ENSRNOT00000082614	Ccl28 Links NCBI RGD Ensembl Show fit	C-C motif chemokine ligand 28
chr17_+_52938980 Show fit	0.00	ENSRNOT00000081052	Gabpb1l Links NCBI RGD Ensembl Show fit	GA binding protein transcription factor, beta subunit 1-like
chr1_-_102013243 Show fit	0.00	ENSRNOT00000042115	Abcc6 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily C member 6
chr15_-_109394905 Show fit	0.00	ENSRNOT00000019602 ENSRNOT00000078424	Tmtc4 Links NCBI RGD Ensembl Show fit	transmembrane and tetratricopeptide repeat containing 4
chr9_+_79659251 Show fit	0.00	ENSRNOT00000021656	Xrcc5 Links NCBI RGD Ensembl Show fit	X-ray repair cross complementing 5
chr10_-_93675991 Show fit	0.00	ENSRNOT00000090662	March10 Links NCBI RGD Ensembl Show fit	membrane associated ring-CH-type finger 10
chr1_+_31700953 Show fit	0.00	ENSRNOT00000020251	Exoc3 Links NCBI RGD Ensembl Show fit	exocyst complex component 3
chr2_-_188727670 Show fit	0.00	ENSRNOT00000074920	Lenep Links NCBI RGD Ensembl Show fit	lens epithelial protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0001788	antibody-dependent cellular cytotoxicity(GO:0001788)
0.0	0.1	GO:0035566	regulation of metanephros size(GO:0035566)
0.0	0.1	GO:0008616	queuosine biosynthetic process(GO:0008616) queuosine metabolic process(GO:0046116)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0070557	PCNA-p21 complex(GO:0070557)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019912	cyclin-dependent protein kinase activating kinase activity(GO:0019912)
0.0	0.1	GO:0019770	IgG receptor activity(GO:0019770)
0.0	0.1	GO:0008479	queuine tRNA-ribosyltransferase activity(GO:0008479)