GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Foxo6 Links NCBI RGD Ensembl	ENSRNOG00000032639	forkhead box O6

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Foxo6	rn6_v1_chr5_-_139227196_139227196	-0.27	6.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_+_47032113 Show fit	0.15	ENSRNOT00000024412	Tulp4 Links NCBI RGD Ensembl Show fit	tubby like protein 4
chr4_+_62019970 Show fit	0.14	ENSRNOT00000013133	LOC100910708 Links NCBI RGD Ensembl Show fit	aldose reductase-related protein 1-like
chr1_+_99505677 Show fit	0.14	ENSRNOT00000024645	Zfp719 Links NCBI RGD Ensembl Show fit	zinc finger protein 719
chr19_-_37216572 Show fit	0.13	ENSRNOT00000020405	Tradd Links NCBI RGD Ensembl Show fit	TNFRSF1A-associated via death domain
chr12_-_47987255 Show fit	0.13	ENSRNOT00000074000	Ube3b Links NCBI RGD Ensembl Show fit	ubiquitin protein ligase E3B
chr10_-_83128297 Show fit	0.13	ENSRNOT00000082160	Kat7 Links NCBI RGD Ensembl Show fit	lysine acetyltransferase 7
chr7_-_116106368 Show fit	0.12	ENSRNOT00000035678	Ly6k Links NCBI RGD Ensembl Show fit	lymphocyte antigen 6 complex, locus K
chr6_-_76608864 Show fit	0.12	ENSRNOT00000010824	Ralgapa1 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 1
chr3_-_21669957 Show fit	0.11	ENSRNOT00000012354 ENSRNOT00000078718	Rc3h2 Links NCBI RGD Ensembl Show fit	ring finger and CCCH-type domains 2
chr8_+_99894762 Show fit	0.10	ENSRNOT00000081768	Plscr4 Links NCBI RGD Ensembl Show fit	phospholipid scramblase 4
chr8_+_99880073 Show fit	0.10	ENSRNOT00000010765	Plscr4 Links NCBI RGD Ensembl Show fit	phospholipid scramblase 4
chr7_-_40316532 Show fit	0.10	ENSRNOT00000083347	RGD1307947 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA C430008C19
chr17_-_57394985 Show fit	0.10	ENSRNOT00000019968	Epc1 Links NCBI RGD Ensembl Show fit	enhancer of polycomb homolog 1
chr1_+_263968134 Show fit	0.10	ENSRNOT00000018090	LOC681458 Links NCBI RGD Ensembl Show fit	similar to stearoyl-coenzyme A desaturase 3
chr8_+_12160067 Show fit	0.09	ENSRNOT00000036338	Maml2 Links NCBI RGD Ensembl Show fit	mastermind-like transcriptional coactivator 2
chr3_-_66335869 Show fit	0.09	ENSRNOT00000079781 ENSRNOT00000043238 ENSRNOT00000073412 ENSRNOT00000057878 ENSRNOT00000079212	Cerkl Links NCBI RGD Ensembl Show fit	ceramide kinase-like
chr15_-_52399074 Show fit	0.09	ENSRNOT00000018440	Xpo7 Links NCBI RGD Ensembl Show fit	exportin 7
chr6_+_43234526 Show fit	0.09	ENSRNOT00000086808	Asap2 Links NCBI RGD Ensembl Show fit	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
chr2_+_23289374 Show fit	0.09	ENSRNOT00000090666 ENSRNOT00000032783	Dmgdh Links NCBI RGD Ensembl Show fit	dimethylglycine dehydrogenase
chrX_+_43183381 Show fit	0.08	ENSRNOT00000039874	Magea8 Links NCBI RGD Ensembl Show fit	melanoma antigen, family A, 8
chr12_-_43576754 Show fit	0.08	ENSRNOT00000042331 ENSRNOT00000081780	Med13l Links NCBI RGD Ensembl Show fit	mediator complex subunit 13-like
chr3_-_113057791 Show fit	0.08	ENSRNOT00000056190	Tgm7l1 Links NCBI RGD Ensembl Show fit	transglutaminase 7-like 1
chr4_+_29639154 Show fit	0.08	ENSRNOT00000073687	Casd1 Links NCBI RGD Ensembl Show fit	CAS1 domain containing 1
chr9_+_17163354 Show fit	0.08	ENSRNOT00000026049	Polh Links NCBI RGD Ensembl Show fit	DNA polymerase eta
chrX_+_111735820 Show fit	0.07	ENSRNOT00000086948	Frmpd3 Links NCBI RGD Ensembl Show fit	FERM and PDZ domain containing 3
chr9_+_92859988 Show fit	0.07	ENSRNOT00000085332	Cab39 Links NCBI RGD Ensembl Show fit	calcium binding protein 39
chr3_+_122114108 Show fit	0.07	ENSRNOT00000091935	Sirpa Links NCBI RGD Ensembl Show fit	signal-regulatory protein alpha
chrX_-_75224268 Show fit	0.07	ENSRNOT00000089809	Abcb7 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily B member 7
chr7_+_97559841 Show fit	0.07	ENSRNOT00000007326	Zhx2 Links NCBI RGD Ensembl Show fit	zinc fingers and homeoboxes 2
chr1_-_128287151 Show fit	0.06	ENSRNOT00000084946 ENSRNOT00000089723	Mef2a Links NCBI RGD Ensembl Show fit	myocyte enhancer factor 2a
chr7_+_54021832 Show fit	0.06	ENSRNOT00000058589	Osbpl8 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 8
chr20_+_2500689 Show fit	0.06	ENSRNOT00000001021	Trim39 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 39
chr12_+_41155497 Show fit	0.06	ENSRNOT00000041741	Oas1g Links NCBI RGD Ensembl Show fit	2'-5' oligoadenylate synthetase 1G
chr17_-_46794845 Show fit	0.06	ENSRNOT00000077910 ENSRNOT00000090663 ENSRNOT00000078331	Elmo1 Links NCBI RGD Ensembl Show fit	engulfment and cell motility 1
chr1_+_177183209 Show fit	0.06	ENSRNOT00000085326	Micalcl Links NCBI RGD Ensembl Show fit	MICAL C-terminal like
chr4_+_120671489 Show fit	0.06	ENSRNOT00000029125	Mgll Links NCBI RGD Ensembl Show fit	monoglyceride lipase
chr18_-_399242 Show fit	0.06	ENSRNOT00000045926	F8 Links NCBI RGD Ensembl Show fit	coagulation factor VIII
chr17_-_9558624 Show fit	0.06	ENSRNOT00000036223 ENSRNOT00000083492	B4galt7 Links NCBI RGD Ensembl Show fit	beta-1,4-galactosyltransferase 7
chr5_+_122100099 Show fit	0.06	ENSRNOT00000007738	Pde4b Links NCBI RGD Ensembl Show fit	phosphodiesterase 4B
chr5_+_58855773 Show fit	0.06	ENSRNOT00000072869	Rusc2 Links NCBI RGD Ensembl Show fit	RUN and SH3 domain containing 2
chr10_-_51576376 Show fit	0.06	ENSRNOT00000004829	Arhgap44 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 44
chr1_-_193328371 Show fit	0.06	ENSRNOT00000019304 ENSRNOT00000031770 ENSRNOT00000019309	Arhgap17 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 17
chr5_-_160282810 Show fit	0.05	ENSRNOT00000076160 ENSRNOT00000016352	Ddi2 Links NCBI RGD Ensembl Show fit	DNA-damage inducible protein 2
chr4_+_153876149 Show fit	0.05	ENSRNOT00000018083	Slc6a13 Links NCBI RGD Ensembl Show fit	solute carrier family 6 member 13
chr11_-_17119582 Show fit	0.05	ENSRNOT00000087665	RGD1563888 Links NCBI RGD Ensembl Show fit	similar to DNA segment, Chr 16, ERATO Doi 472, expressed
chr13_+_98231326 Show fit	0.05	ENSRNOT00000003837	Cdc42bpa Links NCBI RGD Ensembl Show fit	CDC42 binding protein kinase alpha
chr4_+_22084954 Show fit	0.05	ENSRNOT00000090968	Crot Links NCBI RGD Ensembl Show fit	carnitine O-octanoyltransferase
chr1_-_67065797 Show fit	0.05	ENSRNOT00000048152	Vom1r46 Links NCBI RGD Ensembl Show fit	vomeronasal 1 receptor 46
chr1_-_275876329 Show fit	0.05	ENSRNOT00000047903	Gpam Links NCBI RGD Ensembl Show fit	glycerol-3-phosphate acyltransferase, mitochondrial
chr8_-_78397123 Show fit	0.05	ENSRNOT00000087270 ENSRNOT00000084925	Tcf12 Links NCBI RGD Ensembl Show fit	transcription factor 12
chr2_-_149432106 Show fit	0.04	ENSRNOT00000051027	P2ry13 Links NCBI RGD Ensembl Show fit	purinergic receptor P2Y13
chr13_+_82552550 Show fit	0.04	ENSRNOT00000003817 ENSRNOT00000076722 ENSRNOT00000076607	Slc19a2 Links NCBI RGD Ensembl Show fit	solute carrier family 19 member 2
chr11_+_42945084 Show fit	0.04	ENSRNOT00000002292	Crybg3 Links NCBI RGD Ensembl Show fit	crystallin beta-gamma domain containing 3
chr11_-_71743421 Show fit	0.04	ENSRNOT00000002395	Rnf168 Links NCBI RGD Ensembl Show fit	ring finger protein 168
chr3_-_119611136 Show fit	0.04	ENSRNOT00000016157	Ncaph Links NCBI RGD Ensembl Show fit	non-SMC condensin I complex, subunit H
chr5_-_33664435 Show fit	0.04	ENSRNOT00000009047	Wwp1 Links NCBI RGD Ensembl Show fit	WW domain containing E3 ubiquitin protein ligase 1
chr19_+_38643108 Show fit	0.04	ENSRNOT00000087392	LOC100360619 Links NCBI RGD Ensembl Show fit	ribosomal protein L28-like
chr18_-_55916220 Show fit	0.04	ENSRNOT00000025934	Synpo Links NCBI RGD Ensembl Show fit	synaptopodin
chr15_+_18941431 Show fit	0.04	ENSRNOT00000092092	AABR07017236.1 Links NCBI RGD Ensembl Show fit
chr20_+_44803666 Show fit	0.04	ENSRNOT00000057227	Rev3l Links NCBI RGD Ensembl Show fit	REV3 like, DNA directed polymerase zeta catalytic subunit
chr11_-_84583542 Show fit	0.04	ENSRNOT00000064212	Yeats2 Links NCBI RGD Ensembl Show fit	YEATS domain containing 2
chr16_-_9658484 Show fit	0.04	ENSRNOT00000065216	Mapk8 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 8
chr20_+_44803885 Show fit	0.04	ENSRNOT00000077936	Rev3l Links NCBI RGD Ensembl Show fit	REV3 like, DNA directed polymerase zeta catalytic subunit
chrX_+_116399611 Show fit	0.04	ENSRNOT00000050854	Zcchc16 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 16
chr1_+_248210041 Show fit	0.03	ENSRNOT00000047024	AABR07006688.2 Links NCBI RGD Ensembl Show fit
chr1_-_247088012 Show fit	0.03	ENSRNOT00000020464	Spata6l Links NCBI RGD Ensembl Show fit	spermatogenesis associated 6-like
chr7_+_15422479 Show fit	0.03	ENSRNOT00000066520	Zfp563 Links NCBI RGD Ensembl Show fit	zinc finger protein 563
chr11_+_36634662 Show fit	0.03	ENSRNOT00000050178	B3galt5 Links NCBI RGD Ensembl Show fit	Beta-1,3-galactosyltransferase 5
chr14_+_17247362 Show fit	0.03	ENSRNOT00000030222	Sdad1 Links NCBI RGD Ensembl Show fit	SDA1 domain containing 1
chr3_-_92749121 Show fit	0.03	ENSRNOT00000008760	Cd44 Links NCBI RGD Ensembl Show fit	CD44 molecule (Indian blood group)
chr11_+_88095170 Show fit	0.03	ENSRNOT00000041557	Ccdc116 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 116
chr10_+_57660067 Show fit	0.03	ENSRNOT00000010144	Mis12 Links NCBI RGD Ensembl Show fit	MIS12 kinetochore complex component
chrX_+_1297099 Show fit	0.03	ENSRNOT00000013522	Elk1 Links NCBI RGD Ensembl Show fit	ELK1, ETS transcription factor
chrX_-_123474154 Show fit	0.03	ENSRNOT00000092415 ENSRNOT00000092455	RGD1564541 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ22965
chr4_+_25635765 Show fit	0.03	ENSRNOT00000009340	Gtpbp10 Links NCBI RGD Ensembl Show fit	GTP binding protein 10
chr1_+_86973745 Show fit	0.03	ENSRNOT00000078156	Rinl Links NCBI RGD Ensembl Show fit	Ras and Rab interactor-like
chr10_-_6870011 Show fit	0.02	ENSRNOT00000003439	RGD1309748 Links NCBI RGD Ensembl Show fit	similar to CG4768-PA
chr8_-_40883880 Show fit	0.02	ENSRNOT00000075593	LOC102550797 Links NCBI RGD Ensembl Show fit	disks large homolog 5-like
chr3_+_123776181 Show fit	0.02	ENSRNOT00000090764 ENSRNOT00000034146	Mavs Links NCBI RGD Ensembl Show fit	mitochondrial antiviral signaling protein
chr10_-_71439540 Show fit	0.02	ENSRNOT00000087769	Tada2a Links NCBI RGD Ensembl Show fit	transcriptional adaptor 2A
chr3_-_71798531 Show fit	0.02	ENSRNOT00000088170	Calcrl Links NCBI RGD Ensembl Show fit	calcitonin receptor like receptor
chr18_+_29124428 Show fit	0.02	ENSRNOT00000073131	Igip Links NCBI RGD Ensembl Show fit	IgA-inducing protein
chr7_+_80625010 Show fit	0.02	ENSRNOT00000084940	Oxr1 Links NCBI RGD Ensembl Show fit	oxidation resistance 1
chr20_+_41083317 Show fit	0.02	ENSRNOT00000000660	Tspyl1 Links NCBI RGD Ensembl Show fit	TSPY-like 1
chr2_+_247299433 Show fit	0.02	ENSRNOT00000050330	Unc5c Links NCBI RGD Ensembl Show fit	unc-5 netrin receptor C
chr8_-_21384131 Show fit	0.02	ENSRNOT00000071010	Zfp560 Links NCBI RGD Ensembl Show fit	zinc finger protein 560
chr9_-_99659425 Show fit	0.02	ENSRNOT00000051686	Olr1343 Links NCBI RGD Ensembl Show fit	olfactory receptor 1343
chr18_-_71614980 Show fit	0.02	ENSRNOT00000032563	LOC102548286 Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 19-like
chr14_-_72122158 Show fit	0.02	ENSRNOT00000064495	C1qtnf7 Links NCBI RGD Ensembl Show fit	C1q and tumor necrosis factor related protein 7
chr15_-_42517553 Show fit	0.02	ENSRNOT00000081500 ENSRNOT00000021320	Esco2 Links NCBI RGD Ensembl Show fit	establishment of sister chromatid cohesion N-acetyltransferase 2
chr1_-_253000760 Show fit	0.01	ENSRNOT00000030024	Slc16a12 Links NCBI RGD Ensembl Show fit	solute carrier family 16, member 12
chrX_+_15669191 Show fit	0.01	ENSRNOT00000013553	Magix Links NCBI RGD Ensembl Show fit	MAGI family member, X-linked
chr4_-_145487426 Show fit	0.01	ENSRNOT00000013488	Emc3 Links NCBI RGD Ensembl Show fit	ER membrane protein complex subunit 3
chr11_-_65350442 Show fit	0.01	ENSRNOT00000003773	Gpr156 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 156
chr13_-_27192592 Show fit	0.01	ENSRNOT00000040021	Serpinb3 Links NCBI RGD Ensembl Show fit	serpin family B member 3
chr8_-_67040005 Show fit	0.01	ENSRNOT00000038641	Glce Links NCBI RGD Ensembl Show fit	glucuronic acid epimerase
chr3_+_142739781 Show fit	0.01	ENSRNOT00000006181	Sstr4 Links NCBI RGD Ensembl Show fit	somatostatin receptor 4
chr16_-_20641908 Show fit	0.01	ENSRNOT00000026846	Ell Links NCBI RGD Ensembl Show fit	elongation factor for RNA polymerase II
chr8_+_99636749 Show fit	0.01	ENSRNOT00000086524	Plscr1 Links NCBI RGD Ensembl Show fit	phospholipid scramblase 1
chr10_+_11046221 Show fit	0.01	ENSRNOT00000005109	Nmral1 Links NCBI RGD Ensembl Show fit	NmrA like redox sensor 1
chr1_+_201687758 Show fit	0.01	ENSRNOT00000093308	Dmbt1 Links NCBI RGD Ensembl Show fit	deleted in malignant brain tumors 1
chrX_-_37705263 Show fit	0.01	ENSRNOT00000043666	Map3k15 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase kinase kinase 15
chr18_+_61377051 Show fit	0.01	ENSRNOT00000066659	Oacyl Links NCBI RGD Ensembl Show fit	O-acyltransferase like
chr1_-_143398093 Show fit	0.01	ENSRNOT00000078916	Fsd2 Links NCBI RGD Ensembl Show fit	fibronectin type III and SPRY domain containing 2
chr2_+_52379341 Show fit	0.00	ENSRNOT00000084486	Ccl28 Links NCBI RGD Ensembl Show fit	C-C motif chemokine ligand 28
chr7_-_36408588 Show fit	0.00	ENSRNOT00000063946	Cradd Links NCBI RGD Ensembl Show fit	CASP2 and RIPK1 domain containing adaptor with death domain
chr1_-_224389389 Show fit	0.00	ENSRNOT00000077408 ENSRNOT00000050010	UST4r Links NCBI RGD Ensembl Show fit	integral membrane transport protein UST4r
chr2_-_232117134 Show fit	0.00	ENSRNOT00000030798	Alpk1 Links NCBI RGD Ensembl Show fit	alpha-kinase 1
chr5_+_103251986 Show fit	0.00	ENSRNOT00000008757	Cntln Links NCBI RGD Ensembl Show fit	centlein
chr2_-_30846149 Show fit	0.00	ENSRNOT00000025506	Slc30a5 Links NCBI RGD Ensembl Show fit	solute carrier family 30 member 5
chr13_-_45040593 Show fit	0.00	ENSRNOT00000004908	Lct Links NCBI RGD Ensembl Show fit	lactase
chr9_+_17120759 Show fit	0.00	ENSRNOT00000025787	Polr1c Links NCBI RGD Ensembl Show fit	RNA polymerase I subunit C
chr15_-_18675431 Show fit	0.00	ENSRNOT00000080794	Abhd6 Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 6
chr5_-_173653905 Show fit	0.00	ENSRNOT00000038556	Plekhn1 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing N1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0072720	response to dithiothreitol(GO:0072720)
0.0	0.1	GO:0061470	T follicular helper cell differentiation(GO:0061470)
0.0	0.1	GO:1903964	monounsaturated fatty acid metabolic process(GO:1903964) monounsaturated fatty acid biosynthetic process(GO:1903966)
0.0	0.1	GO:0006579	amino-acid betaine catabolic process(GO:0006579)
0.0	0.1	GO:0098886	modification of dendritic spine(GO:0098886)
0.0	0.1	GO:0055005	ventricular cardiac myofibril assembly(GO:0055005)
0.0	0.1	GO:0007597	blood coagulation, intrinsic pathway(GO:0007597)
0.0	0.1	GO:0090204	protein localization to nuclear pore(GO:0090204)
0.0	0.1	GO:0007221	positive regulation of transcription of Notch receptor target(GO:0007221)
0.0	0.1	GO:0042276	error-prone translesion synthesis(GO:0042276)
0.0	0.1	GO:2000124	regulation of endocannabinoid signaling pathway(GO:2000124)
0.0	0.0	GO:0071934	thiamine transmembrane transport(GO:0071934)
0.0	0.0	GO:2000371	regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000371) positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000373)
0.0	0.2	GO:0017121	phospholipid scrambling(GO:0017121)
0.0	0.0	GO:1902595	regulation of DNA replication origin binding(GO:1902595)
0.0	0.1	GO:0051798	positive regulation of hair follicle development(GO:0051798)
0.0	0.1	GO:0001579	medium-chain fatty acid transport(GO:0001579)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0032777	Piccolo NuA4 histone acetyltransferase complex(GO:0032777)
0.0	0.1	GO:0016035	zeta DNA polymerase complex(GO:0016035)
0.0	0.0	GO:0097444	spine apparatus(GO:0097444)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0032896	palmitoyl-CoA 9-desaturase activity(GO:0032896)
0.0	0.1	GO:0001729	ceramide kinase activity(GO:0001729)
0.0	0.1	GO:0016414	carnitine O-octanoyltransferase activity(GO:0008458) O-octanoyltransferase activity(GO:0016414)
0.0	0.2	GO:0042609	CD4 receptor binding(GO:0042609)
0.0	0.0	GO:0015563	thiamine transmembrane transporter activity(GO:0015234) uptake transmembrane transporter activity(GO:0015563)
0.0	0.1	GO:0003831	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity(GO:0003831)
0.0	0.1	GO:0070513	death domain binding(GO:0070513)
0.0	0.1	GO:0005049	nuclear export signal receptor activity(GO:0005049)