GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Mtf1 Links NCBI RGD Ensembl	ENSRNOG00000025724	metal-regulatory transcription factor 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Mtf1	rn6_v1_chr5_+_142797366_142797366	-0.94	1.9e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr19_-_11302938 Show fit	0.50	ENSRNOT00000038212	AC128848.1 Links NCBI RGD Ensembl Show fit
chr19_-_11308740 Show fit	0.28	ENSRNOT00000067391	Mt2A Links NCBI RGD Ensembl Show fit	metallothionein 2A
chr4_+_170149029 Show fit	0.12	ENSRNOT00000073287	LOC103690002 Links NCBI RGD Ensembl Show fit	histone H2A.J
chr1_+_72882806 Show fit	0.11	ENSRNOT00000024640	Tnni3 Links NCBI RGD Ensembl Show fit	troponin I3, cardiac type
chr2_+_198359754 Show fit	0.10	ENSRNOT00000048582	Hist2h2ab Links NCBI RGD Ensembl Show fit	histone cluster 2 H2A family member b
chr13_+_52553775 Show fit	0.10	ENSRNOT00000011991	Csrp1 Links NCBI RGD Ensembl Show fit	cysteine and glycine-rich protein 1
chr19_-_38189523 Show fit	0.08	ENSRNOT00000027200	Slc7a6os Links NCBI RGD Ensembl Show fit	solute carrier family 7, member 6 opposite strand
chr4_-_123494742 Show fit	0.08	ENSRNOT00000073268	Slc41a3 Links NCBI RGD Ensembl Show fit	solute carrier family 41, member 3
chr4_-_129430251 Show fit	0.08	ENSRNOT00000067881	Fam19a4 Links NCBI RGD Ensembl Show fit	family with sequence similarity 19 member A4, C-C motif chemokine like
chr13_+_75059927 Show fit	0.07	ENSRNOT00000080801	LOC680254 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC680254
chr3_+_124088157 Show fit	0.07	ENSRNOT00000028876	Smox Links NCBI RGD Ensembl Show fit	spermine oxidase
chr1_-_77808462 Show fit	0.07	ENSRNOT00000078917 ENSRNOT00000080422	LOC103689961 Links NCBI RGD Ensembl Show fit	selenoprotein W-like
chr1_-_77535681 Show fit	0.07	ENSRNOT00000018559	Selenow Links NCBI RGD Ensembl Show fit	selenoprotein W
chr20_-_5806097 Show fit	0.06	ENSRNOT00000000611	Clps Links NCBI RGD Ensembl Show fit	colipase
chrX_+_15035569 Show fit	0.05	ENSRNOT00000006491 ENSRNOT00000078392	Porcn Links NCBI RGD Ensembl Show fit	porcupine homolog (Drosophila)
chr2_-_45077219 Show fit	0.05	ENSRNOT00000014319	Gzmk Links NCBI RGD Ensembl Show fit	granzyme K
chr7_-_116963281 Show fit	0.05	ENSRNOT00000082058 ENSRNOT00000012306	Tsta3 Links NCBI RGD Ensembl Show fit	tissue specific transplantation antigen P35B
chr1_+_12823363 Show fit	0.05	ENSRNOT00000086790	Cited2 Links NCBI RGD Ensembl Show fit	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
chr19_+_25983169 Show fit	0.05	ENSRNOT00000004404	Syce2 Links NCBI RGD Ensembl Show fit	synaptonemal complex central element protein 2
chr5_-_106758032 Show fit	0.05	ENSRNOT00000033651	Hacd4 Links NCBI RGD Ensembl Show fit	3-hydroxyacyl-CoA dehydratase 4
chr14_-_86706626 Show fit	0.04	ENSRNOT00000082893	H2afv Links NCBI RGD Ensembl Show fit	H2A histone family, member V
chr13_+_97702097 Show fit	0.04	ENSRNOT00000057787	LOC103689999 Links NCBI RGD Ensembl Show fit	saccharopine dehydrogenase-like oxidoreductase
chr4_-_119756765 Show fit	0.04	ENSRNOT00000013884	Cnbp Links NCBI RGD Ensembl Show fit	CCHC-type zinc finger, nucleic acid binding protein
chr19_-_52282877 Show fit	0.04	ENSRNOT00000021271	Kcng4 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel modifier subfamily G member 4
chr3_+_175548174 Show fit	0.04	ENSRNOT00000091941	Adrm1 Links NCBI RGD Ensembl Show fit	adhesion regulating molecule 1
chr9_-_119321500 Show fit	0.04	ENSRNOT00000048125	Myl12b Links NCBI RGD Ensembl Show fit	myosin light chain 12B
chr9_+_16543688 Show fit	0.04	ENSRNOT00000021868	Cnpy3 Links NCBI RGD Ensembl Show fit	canopy FGF signaling regulator 3
chr12_-_11265865 Show fit	0.04	ENSRNOT00000001315	Arpc1b Links NCBI RGD Ensembl Show fit	actin related protein 2/3 complex, subunit 1B
chr6_-_55647665 Show fit	0.03	ENSRNOT00000007414	Bzw2 Links NCBI RGD Ensembl Show fit	basic leucine zipper and W2 domains 2
chr20_-_5805627 Show fit	0.03	ENSRNOT00000085996	Clps Links NCBI RGD Ensembl Show fit	colipase
chr4_-_115453659 Show fit	0.03	ENSRNOT00000065847	Tex261 Links NCBI RGD Ensembl Show fit	testis expressed 261
chr5_+_152559577 Show fit	0.03	ENSRNOT00000082245	Slc30a2 Links NCBI RGD Ensembl Show fit	solute carrier family 30 member 2
chr1_-_81377976 Show fit	0.03	ENSRNOT00000075189	Srrm5 Links NCBI RGD Ensembl Show fit	serine/arginine repetitive matrix 5
chr1_+_189549960 Show fit	0.03	ENSRNOT00000019654	Exnef Links NCBI RGD Ensembl Show fit	exonuclease NEF-sp
chr16_-_40555576 Show fit	0.03	ENSRNOT00000015529	Vegfc Links NCBI RGD Ensembl Show fit	vascular endothelial growth factor C
chr19_+_55300395 Show fit	0.03	ENSRNOT00000092169	Ctu2 Links NCBI RGD Ensembl Show fit	cytosolic thiouridylase subunit 2
chrX_+_74497262 Show fit	0.03	ENSRNOT00000003899	Zcchc13 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 13
chr15_+_18540913 Show fit	0.03	ENSRNOT00000010545	Pdhb Links NCBI RGD Ensembl Show fit	pyruvate dehydrogenase (lipoamide) beta
chr20_+_18492169 Show fit	0.03	ENSRNOT00000046536	LOC103690821 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L39
chr7_-_141307233 Show fit	0.03	ENSRNOT00000071885	Racgap1 Links NCBI RGD Ensembl Show fit	Rac GTPase-activating protein 1
chr7_-_117679219 Show fit	0.03	ENSRNOT00000071522	Slc39a4 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 4
chr15_-_37410848 Show fit	0.03	ENSRNOT00000081757	Gjb6 Links NCBI RGD Ensembl Show fit	gap junction protein, beta 6
chrX_+_28435507 Show fit	0.03	ENSRNOT00000005615	Prps2 Links NCBI RGD Ensembl Show fit	phosphoribosyl pyrophosphate synthetase 2
chr9_+_93030714 Show fit	0.03	ENSRNOT00000023581	Spata3 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 3
chr1_+_217018916 Show fit	0.02	ENSRNOT00000028195 ENSRNOT00000078979	Dhcr7 Links NCBI RGD Ensembl Show fit	7-dehydrocholesterol reductase
chr10_+_29165577 Show fit	0.02	ENSRNOT00000078415	Ccnjl Links NCBI RGD Ensembl Show fit	cyclin J-like
chr6_+_127400585 Show fit	0.02	ENSRNOT00000087429	Ppp4r4 Links NCBI RGD Ensembl Show fit	protein phosphatase 4, regulatory subunit 4
chr16_+_47368768 Show fit	0.02	ENSRNOT00000017966	Wwc2 Links NCBI RGD Ensembl Show fit	WW and C2 domain containing 2
chrX_-_16526028 Show fit	0.02	ENSRNOT00000093647	Dgkk Links NCBI RGD Ensembl Show fit	diacylglycerol kinase kappa
chr19_+_56179111 Show fit	0.02	ENSRNOT00000046155	Tcf25 Links NCBI RGD Ensembl Show fit	transcription factor 25
chr3_-_171166454 Show fit	0.02	ENSRNOT00000034131	Ctcfl Links NCBI RGD Ensembl Show fit	CCCTC-binding factor like
chr8_-_71784551 Show fit	0.02	ENSRNOT00000022960	Snx1 Links NCBI RGD Ensembl Show fit	sorting nexin 1
chr6_-_132747828 Show fit	0.02	ENSRNOT00000005753	Slc25a29 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 29
chr1_-_213921208 Show fit	0.02	ENSRNOT00000044393	Ano9 Links NCBI RGD Ensembl Show fit	anoctamin 9
chr20_-_11737050 Show fit	0.02	ENSRNOT00000001637	Sumo3 Links NCBI RGD Ensembl Show fit	small ubiquitin-like modifier 3
chr4_-_61573003 Show fit	0.02	ENSRNOT00000012179	Slc35b4 Links NCBI RGD Ensembl Show fit	solute carrier family 35 member B4
chr3_+_114087287 Show fit	0.02	ENSRNOT00000023017	B2m Links NCBI RGD Ensembl Show fit	beta-2 microglobulin
chr10_-_18574909 Show fit	0.02	ENSRNOT00000083090	Kcnip1 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel interacting protein 1
chr8_+_60117729 Show fit	0.02	ENSRNOT00000021074	Isl2 Links NCBI RGD Ensembl Show fit	ISL LIM homeobox 2
chr5_+_164950917 Show fit	0.02	ENSRNOT00000083678	Mad2l2 Links NCBI RGD Ensembl Show fit	MAD2 mitotic arrest deficient-like 2 (yeast)
chr11_-_81757813 Show fit	0.01	ENSRNOT00000002462	Dnajb11 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member B11
chr9_-_84894599 Show fit	0.01	ENSRNOT00000018423	Hdac1l Links NCBI RGD Ensembl Show fit	histone deacetylase 1-like
chr20_+_3364814 Show fit	0.01	ENSRNOT00000001077	RGD1302996 Links NCBI RGD Ensembl Show fit	hypothetical protein MGC:15854
chr16_-_81706664 Show fit	0.01	ENSRNOT00000026580	Lamp1 Links NCBI RGD Ensembl Show fit	lysosomal-associated membrane protein 1
chr8_-_62948720 Show fit	0.01	ENSRNOT00000075476	Islr Links NCBI RGD Ensembl Show fit	immunoglobulin superfamily containing leucine-rich repeat
chr9_+_82596355 Show fit	0.01	ENSRNOT00000065076	Speg Links NCBI RGD Ensembl Show fit	SPEG complex locus
chr4_+_78458625 Show fit	0.01	ENSRNOT00000049891	Tmem176a Links NCBI RGD Ensembl Show fit	transmembrane protein 176A
chr4_+_7355574 Show fit	0.01	ENSRNOT00000013800	Kcnh2 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily H member 2
chr1_-_220096319 Show fit	0.01	ENSRNOT00000091787 ENSRNOT00000073983	Ccs Links NCBI RGD Ensembl Show fit	copper chaperone for superoxide dismutase
chr19_+_10142496 Show fit	0.01	ENSRNOT00000088645 ENSRNOT00000060351	Cngb1 Links NCBI RGD Ensembl Show fit	cyclic nucleotide gated channel beta 1
chr15_-_19876389 Show fit	0.01	ENSRNOT00000012400 ENSRNOT00000086368	Fermt2 Links NCBI RGD Ensembl Show fit	fermitin family member 2
chr5_-_147743723 Show fit	0.01	ENSRNOT00000012854	Hdac1 Links NCBI RGD Ensembl Show fit	histone deacetylase 1
chr5_+_164951789 Show fit	0.01	ENSRNOT00000055658 ENSRNOT00000012193	Mad2l2 Links NCBI RGD Ensembl Show fit	MAD2 mitotic arrest deficient-like 2 (yeast)
chr19_-_55300403 Show fit	0.01	ENSRNOT00000018591	Rnf166 Links NCBI RGD Ensembl Show fit	ring finger protein 166
chr1_-_219853329 Show fit	0.01	ENSRNOT00000026169	Lrfn4 Links NCBI RGD Ensembl Show fit	leucine rich repeat and fibronectin type III domain containing 4
chr5_-_74190991 Show fit	0.01	ENSRNOT00000090366	Epb41l4b Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 4B
chr1_+_29432152 Show fit	0.01	ENSRNOT00000019436 ENSRNOT00000083276	Trmt11 Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 11 homolog
chr8_+_49342067 Show fit	0.01	ENSRNOT00000021693	Mpzl2 Links NCBI RGD Ensembl Show fit	myelin protein zero-like 2
chr16_+_20109200 Show fit	0.01	ENSRNOT00000079784	Jak3 Links NCBI RGD Ensembl Show fit	Janus kinase 3
chr20_+_4852496 Show fit	0.01	ENSRNOT00000088936	Lta Links NCBI RGD Ensembl Show fit	lymphotoxin alpha
chr3_-_13978224 Show fit	0.01	ENSRNOT00000025528	Phf19 Links NCBI RGD Ensembl Show fit	PHD finger protein 19
chr7_+_60099120 Show fit	0.00	ENSRNOT00000007338	LOC100911101 Links NCBI RGD Ensembl Show fit	leucine-rich repeat-containing protein 10-like
chr13_-_98478327 Show fit	0.00	ENSRNOT00000030135	Coq8a Links NCBI RGD Ensembl Show fit	coenzyme Q8A
chr1_+_220446425 Show fit	0.00	ENSRNOT00000027339	LOC100911932 Links NCBI RGD Ensembl Show fit	endosialin-like
chr12_+_7454884 Show fit	0.00	ENSRNOT00000077328	LOC100910196 Links NCBI RGD Ensembl Show fit	katanin p60 ATPase-containing subunit A-like 1-like
chr16_-_21348391 Show fit	0.00	ENSRNOT00000083537	Lpar2 Links NCBI RGD Ensembl Show fit	lysophosphatidic acid receptor 2
chr6_-_47811853 Show fit	0.00	ENSRNOT00000010942	Allc Links NCBI RGD Ensembl Show fit	allantoicase
chr3_+_151609602 Show fit	0.00	ENSRNOT00000065052	Spag4 Links NCBI RGD Ensembl Show fit	sperm associated antigen 4
chr19_-_24831500 Show fit	0.00	ENSRNOT00000005770	Pkn1 Links NCBI RGD Ensembl Show fit	protein kinase N1
chr2_+_27365148 Show fit	0.00	ENSRNOT00000021549	Col4a3bp Links NCBI RGD Ensembl Show fit	collagen type IV alpha 3 binding protein
chr15_-_46719252 Show fit	0.00	ENSRNOT00000015452	Mtmr9 Links NCBI RGD Ensembl Show fit	myotubularin related protein 9
chr8_-_114892910 Show fit	0.00	ENSRNOT00000074934	Ppm1m Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1M

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0036016	response to interleukin-3(GO:0036015) cellular response to interleukin-3(GO:0036016) astrocyte activation(GO:0048143)
0.0	0.0	GO:0060399	positive regulation of growth hormone receptor signaling pathway(GO:0060399)
0.0	0.0	GO:0042350	GDP-L-fucose biosynthetic process(GO:0042350)
0.0	0.0	GO:0060971	embryonic heart tube left/right pattern formation(GO:0060971)
0.0	0.1	GO:0046208	spermine catabolic process(GO:0046208)
0.0	0.0	GO:1901492	positive regulation of lymphangiogenesis(GO:1901492)
0.0	0.0	GO:0002143	tRNA wobble position uridine thiolation(GO:0002143)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1990584	cardiac Troponin complex(GO:1990584)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0046870	cadmium ion binding(GO:0046870)
0.0	0.1	GO:0030172	troponin C binding(GO:0030172)
0.0	0.1	GO:0046592	polyamine oxidase activity(GO:0046592)
0.0	0.0	GO:0102345	3-hydroxy-behenoyl-CoA dehydratase activity(GO:0102344) 3-hydroxy-lignoceroyl-CoA dehydratase activity(GO:0102345)