GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Fubp1 Links NCBI RGD Ensembl	ENSRNOG00000043370	far upstream element binding protein 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Fubp1	rn6_v1_chr2_+_257425679_257425679	-0.41	4.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr20_+_46519431 Show fit	0.15	ENSRNOT00000077765	AABR07045405.1 Links NCBI RGD Ensembl Show fit
chr15_-_30147793 Show fit	0.14	ENSRNOT00000060399	AABR07017693.1 Links NCBI RGD Ensembl Show fit
chr20_+_6356423 Show fit	0.12	ENSRNOT00000000628	Cdkn1a Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 1A
chr6_-_146195819 Show fit	0.11	ENSRNOT00000007625	Sp4 Links NCBI RGD Ensembl Show fit	Sp4 transcription factor
chr16_+_72388880 Show fit	0.11	ENSRNOT00000072459	LOC684871 Links NCBI RGD Ensembl Show fit	similar to Protein C8orf4 (Thyroid cancer protein 1) (TC-1)
chr1_-_211923929 Show fit	0.10	ENSRNOT00000054887	Nkx6-2 Links NCBI RGD Ensembl Show fit	NK6 homeobox 2
chr8_+_98755104 Show fit	0.09	ENSRNOT00000056562	Zic4 Links NCBI RGD Ensembl Show fit	Zic family member 4
chr18_+_74006046 Show fit	0.09	ENSRNOT00000086400	AABR07032622.1 Links NCBI RGD Ensembl Show fit
chr10_+_74724549 Show fit	0.09	ENSRNOT00000009077	Tex14 Links NCBI RGD Ensembl Show fit	testis expressed 14, intercellular bridge forming factor
chr10_-_97756521 Show fit	0.08	ENSRNOT00000045902	Slc16a6 Links NCBI RGD Ensembl Show fit	solute carrier family 16, member 6
chr7_+_120067379 Show fit	0.06	ENSRNOT00000011270	Cdc42ep1 Links NCBI RGD Ensembl Show fit	CDC42 effector protein 1
chr1_-_24191908 Show fit	0.06	ENSRNOT00000061157	Sgk1 Links NCBI RGD Ensembl Show fit	serum/glucocorticoid regulated kinase 1
chr4_-_114823500 Show fit	0.06	ENSRNOT00000089870	NEWGENE_1562258 Links NCBI RGD Ensembl Show fit	INO80 complex subunit B
chr15_+_17834635 Show fit	0.06	ENSRNOT00000085530	LOC361016 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4933406L09
chr8_-_55276070 Show fit	0.06	ENSRNOT00000041555	LOC108351703 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L27a-like
chr4_-_51844331 Show fit	0.05	ENSRNOT00000003593	Gpr37 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 37
chr18_+_51523758 Show fit	0.05	ENSRNOT00000078518	Gramd3 Links NCBI RGD Ensembl Show fit	GRAM domain containing 3
chr18_-_59819113 Show fit	0.05	ENSRNOT00000065939	RGD1562699 Links NCBI RGD Ensembl Show fit	RGD1562699
chr3_-_11382004 Show fit	0.04	ENSRNOT00000047921 ENSRNOT00000064039	Dnm1 Links NCBI RGD Ensembl Show fit	dynamin 1
chr1_+_225037737 Show fit	0.04	ENSRNOT00000077959	Bscl2 Links NCBI RGD Ensembl Show fit	BSCL2, seipin lipid droplet biogenesis associated
chr1_+_264507985 Show fit	0.04	ENSRNOT00000085811	Pax2 Links NCBI RGD Ensembl Show fit	paired box 2
chr14_-_16276068 Show fit	0.04	ENSRNOT00000002876	Ccng2 Links NCBI RGD Ensembl Show fit	cyclin G2
chr10_-_85825735 Show fit	0.04	ENSRNOT00000055379	Fbxo47 Links NCBI RGD Ensembl Show fit	F-box protein 47
chr2_+_207262934 Show fit	0.04	ENSRNOT00000016833	Ppm1j Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1J
chr2_-_77784522 Show fit	0.04	ENSRNOT00000030328	LOC310177 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 0610040D20
chr4_+_168689163 Show fit	0.04	ENSRNOT00000049848	Cdkn1b Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 1B
chr8_-_48692295 Show fit	0.04	ENSRNOT00000065456	Vps11 Links NCBI RGD Ensembl Show fit	VPS11 CORVET/HOPS core subunit
chr9_-_101107535 Show fit	0.04	ENSRNOT00000080892 ENSRNOT00000071424	LOC100911516 Links NCBI RGD Ensembl Show fit	coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like
chr1_-_91588609 Show fit	0.04	ENSRNOT00000050931	Snrpg Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein polypeptide G
chr9_+_46840992 Show fit	0.03	ENSRNOT00000019415	Il1r2 Links NCBI RGD Ensembl Show fit	interleukin 1 receptor type 2
chr9_-_16406338 Show fit	0.03	ENSRNOT00000073079	Tbcc Links NCBI RGD Ensembl Show fit	tubulin folding cofactor C
chr4_-_6978073 Show fit	0.03	ENSRNOT00000045311	Nub1 Links NCBI RGD Ensembl Show fit	negative regulator of ubiquitin-like proteins 1
chr20_+_1749716 Show fit	0.03	ENSRNOT00000048856	Olr1735 Links NCBI RGD Ensembl Show fit	olfactory receptor 1735
chr4_-_150185044 Show fit	0.03	ENSRNOT00000019778	Csgalnact2 Links NCBI RGD Ensembl Show fit	chondroitin sulfate N-acetylgalactosaminyltransferase 2
chr14_-_87701884 Show fit	0.03	ENSRNOT00000079338	Mospd1 Links NCBI RGD Ensembl Show fit	motile sperm domain containing 1
chr7_+_76980040 Show fit	0.03	ENSRNOT00000050726	LOC108350501 Links NCBI RGD Ensembl Show fit	40S ribosomal protein S29
chr8_+_87211819 Show fit	0.03	ENSRNOT00000086093	LOC100363289 Links NCBI RGD Ensembl Show fit	LRRGT00022-like
chr19_-_53754602 Show fit	0.03	ENSRNOT00000035651	Fam92b Links NCBI RGD Ensembl Show fit	family with sequence similarity 92, member B
chrX_-_29648359 Show fit	0.03	ENSRNOT00000086721 ENSRNOT00000006777	Gpm6b Links NCBI RGD Ensembl Show fit	glycoprotein m6b
chr20_+_27212724 Show fit	0.03	ENSRNOT00000032600	Hnrnph3 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein H3
chr13_-_94289333 Show fit	0.03	ENSRNOT00000078195	Pld5 Links NCBI RGD Ensembl Show fit	phospholipase D family, member 5
chr5_-_100977902 Show fit	0.02	ENSRNOT00000077429	Zdhhc21 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 21
chr1_+_264741911 Show fit	0.02	ENSRNOT00000019956	Sema4g Links NCBI RGD Ensembl Show fit	semaphorin 4G
chr10_+_15156207 Show fit	0.02	ENSRNOT00000020363	Ccdc78 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 78
chr7_-_2623781 Show fit	0.02	ENSRNOT00000004173	Spryd4 Links NCBI RGD Ensembl Show fit	SPRY domain containing 4
chr1_+_198067066 Show fit	0.02	ENSRNOT00000084824	Sgf29 Links NCBI RGD Ensembl Show fit	SAGA complex associated factor 29
chr1_-_264756546 Show fit	0.02	ENSRNOT00000020020	Mrpl43 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L43
chr4_+_89536647 Show fit	0.02	ENSRNOT00000058581	Tigd2 Links NCBI RGD Ensembl Show fit	tigger transposable element derived 2
chr7_-_60742660 Show fit	0.02	ENSRNOT00000086116	Mdm2 Links NCBI RGD Ensembl Show fit	MDM2 proto-oncogene
chr1_+_68436917 Show fit	0.02	ENSRNOT00000088586	LOC108348118 Links NCBI RGD Ensembl Show fit	leucyl-cystinyl aminopeptidase
chrX_+_105575759 Show fit	0.02	ENSRNOT00000088760	Armcx3 Links NCBI RGD Ensembl Show fit	armadillo repeat containing, X-linked 3
chr4_+_168599331 Show fit	0.01	ENSRNOT00000086719	Crebl2 Links NCBI RGD Ensembl Show fit	cAMP responsive element binding protein-like 2
chr1_-_219395623 Show fit	0.01	ENSRNOT00000040261	Rpl35a Links NCBI RGD Ensembl Show fit	ribosomal protein L35a
chr12_-_7186873 Show fit	0.01	ENSRNOT00000050438	LOC103690996 Links NCBI RGD Ensembl Show fit	uncharacterized LOC103690996
chr5_+_162808646 Show fit	0.01	ENSRNOT00000021155	Dhrs3 Links NCBI RGD Ensembl Show fit	dehydrogenase/reductase 3
chr18_-_81807627 Show fit	0.01	ENSRNOT00000020376	Timm21 Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 21
chr12_-_43576754 Show fit	0.01	ENSRNOT00000042331 ENSRNOT00000081780	Med13l Links NCBI RGD Ensembl Show fit	mediator complex subunit 13-like
chr2_+_39314714 Show fit	0.01	ENSRNOT00000083786 ENSRNOT00000047282	Smim15 Links NCBI RGD Ensembl Show fit	small integral membrane protein 15
chr17_-_63879166 Show fit	0.01	ENSRNOT00000049391 ENSRNOT00000045183	Zmynd11 Links NCBI RGD Ensembl Show fit	zinc finger, MYND-type containing 11
chr1_-_216828581 Show fit	0.01	ENSRNOT00000066943 ENSRNOT00000088856	Tnfrsf26 Links NCBI RGD Ensembl Show fit	tumor necrosis factor receptor superfamily, member 26
chr1_+_193076430 Show fit	0.01	ENSRNOT00000086492 ENSRNOT00000017885	Tnrc6a Links NCBI RGD Ensembl Show fit	trinucleotide repeat containing 6a
chr10_+_102167771 Show fit	0.01	ENSRNOT00000003804	Cog1 Links NCBI RGD Ensembl Show fit	component of oligomeric golgi complex 1
chr2_-_211831551 Show fit	0.01	ENSRNOT00000039225 ENSRNOT00000090561	Fam102b Links NCBI RGD Ensembl Show fit	family with sequence similarity 102, member B
chr18_+_35850132 Show fit	0.01	ENSRNOT00000067337 ENSRNOT00000075841	LOC103690064 Links NCBI RGD Ensembl Show fit	m7GpppN-mRNA hydrolase-like
chr5_+_164923302 Show fit	0.01	ENSRNOT00000042285	LOC108349682 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L35a
chr3_-_52447622 Show fit	0.01	ENSRNOT00000083552	Scn1a Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel alpha subunit 1
chr4_-_71870273 Show fit	0.01	ENSRNOT00000077384	Olr801 Links NCBI RGD Ensembl Show fit	olfactory receptor 801
chr4_-_152883210 Show fit	0.01	ENSRNOT00000056200	Ccdc77 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 77
chr12_+_13715843 Show fit	0.01	ENSRNOT00000042459	Actb Links NCBI RGD Ensembl Show fit	actin, beta
chr14_-_28536260 Show fit	0.01	ENSRNOT00000059942	Adgrl3 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor L3
chr4_+_163293724 Show fit	0.01	ENSRNOT00000077356	Gabarapl1 Links NCBI RGD Ensembl Show fit	GABA type A receptor associated protein like 1
chr2_+_45104305 Show fit	0.01	ENSRNOT00000014559	Esm1 Links NCBI RGD Ensembl Show fit	endothelial cell-specific molecule 1
chr2_-_189333322 Show fit	0.01	ENSRNOT00000073599 ENSRNOT00000071253 ENSRNOT00000076325	Hax1 Links NCBI RGD Ensembl Show fit	HCLS1 associated protein X-1
chr1_-_167210919 Show fit	0.00	ENSRNOT00000027507	Chrna10 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic alpha 10 subunit
chr14_+_89314176 Show fit	0.00	ENSRNOT00000006765	Upp1 Links NCBI RGD Ensembl Show fit	uridine phosphorylase 1
chr4_-_120041238 Show fit	0.00	ENSRNOT00000073799	LOC100911337 Links NCBI RGD Ensembl Show fit	40S ribosomal protein S25-like
chr2_+_114386019 Show fit	0.00	ENSRNOT00000082148	AABR07009834.1 Links NCBI RGD Ensembl Show fit
chr12_-_1195591 Show fit	0.00	ENSRNOT00000001446	Stard13 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 13
chr13_-_26769374 Show fit	0.00	ENSRNOT00000003768	Bcl2 Links NCBI RGD Ensembl Show fit	BCL2, apoptosis regulator
chr15_+_47373120 Show fit	0.00	ENSRNOT00000070815	Rp1l1 Links NCBI RGD Ensembl Show fit	RP1 like 1
chr6_+_126353223 Show fit	0.00	ENSRNOT00000010385	Golga5 Links NCBI RGD Ensembl Show fit	golgin A5
chr3_-_161272460 Show fit	0.00	ENSRNOT00000020740	Acot8 Links NCBI RGD Ensembl Show fit	acyl-CoA thioesterase 8
chr3_-_8955538 Show fit	0.00	ENSRNOT00000040570	LOC686066 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L38

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0021912	regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification(GO:0021912) regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification(GO:0021913)
0.0	0.1	GO:0060574	intestinal epithelial cell maturation(GO:0060574)
0.0	0.0	GO:0035566	regulation of metanephros size(GO:0035566)
0.0	0.0	GO:2000660	negative regulation of interleukin-1-mediated signaling pathway(GO:2000660)
0.0	0.1	GO:0032466	negative regulation of cytokinesis(GO:0032466)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0070557	PCNA-p21 complex(GO:0070557)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019912	cyclin-dependent protein kinase activating kinase activity(GO:0019912)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	SA G2 AND M PHASES	Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	REACTOME AKT PHOSPHORYLATES TARGETS IN THE CYTOSOL	Genes involved in AKT phosphorylates targets in the cytosol