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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Relb
Z-value: 0.24
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Transcription factors associated with Relb
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
Relb
|
ENSRNOG00000033235 | RELB proto-oncogene, NF-kB subunit |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Relb | rn6_v1_chr1_-_80544825_80544825 | -0.11 | 8.6e-01 | Click! |
Activity profile of Relb motif
Sorted Z-values of Relb motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr6_-_76270457 | 0.17 |
ENSRNOT00000009894
|
Nfkbia
|
NFKB inhibitor alpha |
| chr13_-_89565813 | 0.08 |
ENSRNOT00000004347
|
Pcp4l1
|
Purkinje cell protein 4-like 1 |
| chr10_+_77537340 | 0.07 |
ENSRNOT00000003297
|
Tmem100
|
transmembrane protein 100 |
| chr5_-_169017295 | 0.05 |
ENSRNOT00000067481
|
Camta1
|
calmodulin binding transcription activator 1 |
| chr4_-_157266018 | 0.04 |
ENSRNOT00000019570
|
LOC100911713
|
protein C10-like |
| chr11_+_47243342 | 0.04 |
ENSRNOT00000041116
|
Nfkbiz
|
NFKB inhibitor zeta |
| chr20_+_5184515 | 0.04 |
ENSRNOT00000089411
|
LOC103694381
|
lymphotoxin-beta |
| chr20_-_4863011 | 0.04 |
ENSRNOT00000079503
|
Ltb
|
lymphotoxin beta |
| chr20_-_4366957 | 0.04 |
ENSRNOT00000088244
|
Rnf5
|
ring finger protein 5 |
| chr3_+_2643610 | 0.04 |
ENSRNOT00000037169
|
Fut7
|
fucosyltransferase 7 |
| chr9_+_9842585 | 0.04 |
ENSRNOT00000070806
|
Cd70
|
Cd70 molecule |
| chr14_-_18733391 | 0.04 |
ENSRNOT00000003745
|
Cxcl2
|
C-X-C motif chemokine ligand 2 |
| chrX_-_32355296 | 0.03 |
ENSRNOT00000081652
ENSRNOT00000065075 |
Ap1s2
|
adaptor-related protein complex 1, sigma 2 subunit |
| chr5_-_59025631 | 0.03 |
ENSRNOT00000049000
ENSRNOT00000022801 |
Tpm2
|
tropomyosin 2, beta |
| chr9_+_20279938 | 0.03 |
ENSRNOT00000075612
|
Grcc10
|
gene rich cluster, C10 gene |
| chr5_-_136002900 | 0.03 |
ENSRNOT00000025197
|
Plk3
|
polo-like kinase 3 |
| chr4_-_80313411 | 0.03 |
ENSRNOT00000041621
|
RGD1565415
|
similar to ribosomal protein L27a |
| chr20_-_4863198 | 0.03 |
ENSRNOT00000001108
|
Ltb
|
lymphotoxin beta |
| chr1_+_86948918 | 0.02 |
ENSRNOT00000084839
|
Sirt2
|
sirtuin 2 |
| chr5_+_168019058 | 0.02 |
ENSRNOT00000077202
|
Tnfrsf9
|
TNF receptor superfamily member 9 |
| chr10_+_65448950 | 0.02 |
ENSRNOT00000082348
ENSRNOT00000037016 |
Rab34
|
RAB34, member RAS oncogene family |
| chr1_-_86948845 | 0.02 |
ENSRNOT00000027212
|
Nfkbib
|
NFKB inhibitor beta |
| chr1_-_3849080 | 0.02 |
ENSRNOT00000045301
|
RGD1560633
|
similar to ribosomal protein L27a |
| chr12_+_27155587 | 0.02 |
ENSRNOT00000044800
|
AABR07035916.1
|
|
| chrX_-_40086870 | 0.02 |
ENSRNOT00000010027
|
Smpx
|
small muscle protein, X-linked |
| chr17_+_56109549 | 0.02 |
ENSRNOT00000022190
|
Map3k8
|
mitogen-activated protein kinase kinase kinase 8 |
| chr1_+_93242050 | 0.02 |
ENSRNOT00000013741
|
RGD1562402
|
similar to 60S ribosomal protein L27a |
| chr11_-_82366505 | 0.02 |
ENSRNOT00000041326
|
RGD1559972
|
similar to ribosomal protein L27a |
| chr9_+_82053581 | 0.01 |
ENSRNOT00000086375
|
Wnt10a
|
wingless-type MMTV integration site family, member 10A |
| chr6_-_75763185 | 0.01 |
ENSRNOT00000072589
|
Cfl2
|
cofilin 2 |
| chr3_-_105214989 | 0.01 |
ENSRNOT00000037895
|
Grem1
|
gremlin 1, DAN family BMP antagonist |
| chr10_-_72188164 | 0.01 |
ENSRNOT00000085728
ENSRNOT00000042506 |
Ggnbp2
|
gametogenetin binding protein 2 |
| chr5_-_1347921 | 0.01 |
ENSRNOT00000007994
|
Gdap1
|
ganglioside-induced differentiation-associated-protein 1 |
| chr20_+_4852671 | 0.00 |
ENSRNOT00000001111
|
Lta
|
lymphotoxin alpha |
| chr18_-_36322320 | 0.00 |
ENSRNOT00000060260
|
Grxcr2
|
glutaredoxin and cysteine rich domain containing 2 |
| chr6_+_109562587 | 0.00 |
ENSRNOT00000011563
|
Batf
|
basic leucine zipper ATF-like transcription factor |
| chr1_-_80544825 | 0.00 |
ENSRNOT00000057802
ENSRNOT00000040060 ENSRNOT00000067049 ENSRNOT00000052387 ENSRNOT00000073352 |
Relb
|
RELB proto-oncogene, NF-kB subunit |
| chr20_+_4852496 | 0.00 |
ENSRNOT00000088936
|
Lta
|
lymphotoxin alpha |
| chr6_-_41039437 | 0.00 |
ENSRNOT00000005774
|
Trib2
|
tribbles pseudokinase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Relb
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0070427 | nucleotide-binding oligomerization domain containing 1 signaling pathway(GO:0070427) |
| 0.0 | 0.1 | GO:2000777 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia(GO:2000777) |
| 0.0 | 0.1 | GO:0060842 | arterial endothelial cell differentiation(GO:0060842) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0033256 | I-kappaB/NF-kappaB complex(GO:0033256) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0043120 | tumor necrosis factor binding(GO:0043120) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | REACTOME NFKB IS ACTIVATED AND SIGNALS SURVIVAL | Genes involved in NF-kB is activated and signals survival |