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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Hoxa1
Z-value: 0.40
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Transcription factors associated with Hoxa1
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr10_-_96131880 Show fit | 0.32 |
ENSRNOT00000004578
|
calcium voltage-gated channel auxiliary subunit gamma 5 |
|
| chr5_-_155381732 Show fit | 0.17 |
ENSRNOT00000033670
|
zinc finger and BTB domain containing 40 |
|
| chr7_+_70753101 Show fit | 0.16 |
ENSRNOT00000090001
|
R3H domain containing 2 |
|
| chr1_-_260992291 Show fit | 0.16 |
ENSRNOT00000035415
ENSRNOT00000034758 |
slit guidance ligand 1 |
|
| chr12_+_13810180 Show fit | 0.15 |
ENSRNOT00000084865
ENSRNOT00000038203 |
trinucleotide repeat containing 18 |
|
| chr3_+_154863072 Show fit | 0.15 |
ENSRNOT00000055200
|
small nucleolar RNA host gene 11 |
|
| chr16_+_46731403 Show fit | 0.13 |
ENSRNOT00000017624
|
teneurin transmembrane protein 3 |
|
| chr1_-_267245636 Show fit | 0.13 |
ENSRNOT00000082799
|
SH3 and PX domains 2A |
|
| chr8_+_127171537 Show fit | 0.12 |
ENSRNOT00000078625
ENSRNOT00000051290 ENSRNOT00000087753 |
golgin A4 |
|
| chr15_+_51756978 Show fit | 0.12 |
ENSRNOT00000024067
|
early growth response 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Hoxa1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:2000311 | regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity(GO:2000311) |
| 0.0 | 0.2 | GO:0021834 | chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration(GO:0021834) |
| 0.0 | 0.2 | GO:0031507 | heterochromatin assembly(GO:0031507) |
| 0.0 | 0.1 | GO:1903225 | negative regulation of endodermal cell differentiation(GO:1903225) |
| 0.0 | 0.1 | GO:0051695 | actin filament uncapping(GO:0051695) positive regulation of endocytic recycling(GO:2001137) |
| 0.0 | 0.1 | GO:0072675 | osteoclast fusion(GO:0072675) |
| 0.0 | 0.1 | GO:0006030 | chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) |
| 0.0 | 0.1 | GO:0070842 | aggresome assembly(GO:0070842) |
| 0.0 | 0.1 | GO:0097264 | self proteolysis(GO:0097264) |
| 0.0 | 0.0 | GO:0021589 | hindbrain structural organization(GO:0021577) cerebellum structural organization(GO:0021589) neuronal-glial interaction involved in cerebral cortex radial glia guided migration(GO:0021812) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
| 0.0 | 0.2 | GO:0005677 | chromatin silencing complex(GO:0005677) |
| 0.0 | 0.1 | GO:0005588 | collagen type V trimer(GO:0005588) |
| 0.0 | 0.0 | GO:1990723 | cytoplasmic periphery of the nuclear pore complex(GO:1990723) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0048495 | Roundabout binding(GO:0048495) |
| 0.0 | 0.1 | GO:0072590 | N-acetyl-L-aspartate-L-glutamate ligase activity(GO:0072590) |
| 0.0 | 0.1 | GO:0004971 | AMPA glutamate receptor activity(GO:0004971) |
| 0.0 | 0.1 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 0.1 | GO:0051373 | FATZ binding(GO:0051373) |
| 0.0 | 0.1 | GO:0016176 | superoxide-generating NADPH oxidase activator activity(GO:0016176) |