GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Rxrb Links NCBI RGD Ensembl	ENSRNOG00000000464	retinoid X receptor beta

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Rxrb	rn6_v1_chr20_+_3827086_3827086	-0.40	5.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_-_45215974 Show fit	0.21	ENSRNOT00000010792	Crtam Links NCBI RGD Ensembl Show fit	cytotoxic and regulatory T cell molecule
chr5_+_168078748 Show fit	0.17	ENSRNOT00000024798	Uts2 Links NCBI RGD Ensembl Show fit	urotensin 2
chr5_+_154522119 Show fit	0.13	ENSRNOT00000072618	E2f2 Links NCBI RGD Ensembl Show fit	E2F transcription factor 2
chr9_+_92435896 Show fit	0.11	ENSRNOT00000022901	Fbxo36 Links NCBI RGD Ensembl Show fit	F-box protein 36
chr17_+_76002275 Show fit	0.08	ENSRNOT00000092665 ENSRNOT00000086701	Echdc3 Links NCBI RGD Ensembl Show fit	enoyl CoA hydratase domain containing 3
chr15_+_33121273 Show fit	0.07	ENSRNOT00000016020	Rem2 Links NCBI RGD Ensembl Show fit	RRAD and GEM like GTPase 2
chr6_-_136279399 Show fit	0.06	ENSRNOT00000015333	Bag5l1 Links NCBI RGD Ensembl Show fit	BCL2-associated athanogene 5-like 1
chr3_+_150052483 Show fit	0.06	ENSRNOT00000022265	RGD1561517 Links NCBI RGD Ensembl Show fit	similar to chromosome 20 open reading frame 144
chr5_-_152473868 Show fit	0.05	ENSRNOT00000022130	Fam110d Links NCBI RGD Ensembl Show fit	family with sequence similarity 110, member D
chr6_-_136185651 Show fit	0.05	ENSRNOT00000085594	Bag5 Links NCBI RGD Ensembl Show fit	BCL2-associated athanogene 5
chr12_+_24761210 Show fit	0.05	ENSRNOT00000002003	Cldn4 Links NCBI RGD Ensembl Show fit	claudin 4
chr6_+_136279496 Show fit	0.05	ENSRNOT00000091946	Apopt1 Links NCBI RGD Ensembl Show fit	apoptogenic 1, mitochondrial
chr5_-_22799090 Show fit	0.04	ENSRNOT00000076426 ENSRNOT00000077044	Asph Links NCBI RGD Ensembl Show fit	aspartate-beta-hydroxylase
chr6_+_136185487 Show fit	0.04	ENSRNOT00000015373	Apopt1 Links NCBI RGD Ensembl Show fit	apoptogenic 1, mitochondrial
chr11_+_64601029 Show fit	0.04	ENSRNOT00000004138	Arhgap31 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 31
chr12_+_38368693 Show fit	0.04	ENSRNOT00000083261	Clip1 Links NCBI RGD Ensembl Show fit	CAP-GLY domain containing linker protein 1
chr1_+_72635267 Show fit	0.04	ENSRNOT00000090636	Il11 Links NCBI RGD Ensembl Show fit	interleukin 11
chr3_+_95715193 Show fit	0.04	ENSRNOT00000089525	Pax6 Links NCBI RGD Ensembl Show fit	paired box 6
chr3_-_2434257 Show fit	0.04	ENSRNOT00000013278	Stpg3 Links NCBI RGD Ensembl Show fit	sperm-tail PG-rich repeat containing 3
chr12_-_6630274 Show fit	0.04	ENSRNOT00000087840	AABR07035194.1 Links NCBI RGD Ensembl Show fit
chr4_+_57715946 Show fit	0.03	ENSRNOT00000079059 ENSRNOT00000034429	Klhdc10 Links NCBI RGD Ensembl Show fit	kelch domain containing 10
chr12_+_24978483 Show fit	0.03	ENSRNOT00000040069	Eln Links NCBI RGD Ensembl Show fit	elastin
chr10_-_82209459 Show fit	0.03	ENSRNOT00000004377	Spata20 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 20
chr7_+_133400485 Show fit	0.03	ENSRNOT00000006219	Cntn1 Links NCBI RGD Ensembl Show fit	contactin 1
chr15_+_34270648 Show fit	0.03	ENSRNOT00000026333	Rnf31 Links NCBI RGD Ensembl Show fit	ring finger protein 31
chr2_+_198312428 Show fit	0.03	ENSRNOT00000028758	Sf3b4 Links NCBI RGD Ensembl Show fit	splicing factor 3b, subunit 4
chr5_+_169357517 Show fit	0.03	ENSRNOT00000000079	Acot7 Links NCBI RGD Ensembl Show fit	acyl-CoA thioesterase 7
chr3_-_60813869 Show fit	0.03	ENSRNOT00000058234	Atp5g3 Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
chr3_-_122006803 Show fit	0.03	ENSRNOT00000089660	RGD1566226 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein F830045P16
chrX_-_135342996 Show fit	0.02	ENSRNOT00000084848 ENSRNOT00000008503	Aifm1 Links NCBI RGD Ensembl Show fit	apoptosis inducing factor, mitochondria associated 1
chr3_+_113415774 Show fit	0.02	ENSRNOT00000056151	Serf2 Links NCBI RGD Ensembl Show fit	small EDRK-rich factor 2
chr19_-_42180981 Show fit	0.02	ENSRNOT00000019577	Pmfbp1 Links NCBI RGD Ensembl Show fit	polyamine modulated factor 1 binding protein 1
chr7_+_117326279 Show fit	0.02	ENSRNOT00000050522	Spatc1 Links NCBI RGD Ensembl Show fit	spermatogenesis and centriole associated 1
chr3_-_149356160 Show fit	0.02	ENSRNOT00000037589 ENSRNOT00000081775	Sun5 Links NCBI RGD Ensembl Show fit	Sad1 and UNC84 domain containing 5
chr6_-_122721496 Show fit	0.02	ENSRNOT00000079697	Ptpn21 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 21
chr5_-_75116490 Show fit	0.02	ENSRNOT00000042788	Txndc8 Links NCBI RGD Ensembl Show fit	thioredoxin domain containing 8
chrX_-_77956352 Show fit	0.02	ENSRNOT00000003296	Zcchc5 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 5
chr17_+_57040023 Show fit	0.02	ENSRNOT00000020204	Crem Links NCBI RGD Ensembl Show fit	cAMP responsive element modulator
chr2_+_118910587 Show fit	0.02	ENSRNOT00000065518	Zfp639 Links NCBI RGD Ensembl Show fit	zinc finger protein 639
chr9_-_44786041 Show fit	0.02	ENSRNOT00000067197	Rev1 Links NCBI RGD Ensembl Show fit	REV1, DNA directed polymerase
chr20_+_2194709 Show fit	0.02	ENSRNOT00000001017	Trim15 Links NCBI RGD Ensembl Show fit	tripartite motif containing 15
chr1_-_59347472 Show fit	0.02	ENSRNOT00000017718	Lnpep Links NCBI RGD Ensembl Show fit	leucyl and cystinyl aminopeptidase
chr14_+_36047144 Show fit	0.01	ENSRNOT00000003088	Lnx1 Links NCBI RGD Ensembl Show fit	ligand of numb-protein X 1
chr7_+_77066955 Show fit	0.01	ENSRNOT00000008700	Odf1 Links NCBI RGD Ensembl Show fit	outer dense fiber of sperm tails 1
chr11_-_4332255 Show fit	0.01	ENSRNOT00000087133	Cadm2 Links NCBI RGD Ensembl Show fit	cell adhesion molecule 2
chr14_-_108284619 Show fit	0.01	ENSRNOT00000078814	LOC690352 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC690352
chr4_+_113948514 Show fit	0.01	ENSRNOT00000011521	LOC103692171 Links NCBI RGD Ensembl Show fit	mannosyl-oligosaccharide glucosidase
chrX_-_37705263 Show fit	0.01	ENSRNOT00000043666	Map3k15 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase kinase kinase 15
chr7_-_123586919 Show fit	0.01	ENSRNOT00000011484	Ndufa6 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit A6
chr13_-_74740458 Show fit	0.01	ENSRNOT00000006548	Tex35 Links NCBI RGD Ensembl Show fit	testis expressed 35
chr13_+_48679774 Show fit	0.01	ENSRNOT00000075674	Nucks1 Links NCBI RGD Ensembl Show fit	nuclear casein kinase and cyclin-dependent kinase substrate 1
chr1_+_228142778 Show fit	0.01	ENSRNOT00000028517	Mrpl16 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L16
chr1_+_97712177 Show fit	0.01	ENSRNOT00000027745	MGC114499 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4930433I11 gene
chr9_+_10004805 Show fit	0.01	ENSRNOT00000074117	Slc25a41 Links NCBI RGD Ensembl Show fit	solute carrier family 25, member 41
chr12_+_22142520 Show fit	0.01	ENSRNOT00000038397	Fbxo24 Links NCBI RGD Ensembl Show fit	F-box protein 24
chr3_+_172856733 Show fit	0.01	ENSRNOT00000009826	Edn3 Links NCBI RGD Ensembl Show fit	endothelin 3
chr4_-_120390164 Show fit	0.01	ENSRNOT00000017323 ENSRNOT00000063950	Eefsec Links NCBI RGD Ensembl Show fit	eukaryotic elongation factor, selenocysteine-tRNA-specific
chr10_-_82963919 Show fit	0.01	ENSRNOT00000005807	Dlx4 Links NCBI RGD Ensembl Show fit	distal-less homeobox 4
chr19_-_20508711 Show fit	0.01	ENSRNOT00000032408	LOC680913 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC680913
chr5_+_147069616 Show fit	0.01	ENSRNOT00000072908	Trim62 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 62
chr10_-_87535438 Show fit	0.01	ENSRNOT00000086873	Krtap2-4 Links NCBI RGD Ensembl Show fit	keratin associated protein 2-4
chr8_-_55087832 Show fit	0.00	ENSRNOT00000032152	Dlat Links NCBI RGD Ensembl Show fit	dihydrolipoamide S-acetyltransferase
chr13_+_93751759 Show fit	0.00	ENSRNOT00000065706	Wdr64 Links NCBI RGD Ensembl Show fit	WD repeat domain 64
chr4_-_157486844 Show fit	0.00	ENSRNOT00000038281 ENSRNOT00000022874	Cops7a Links NCBI RGD Ensembl Show fit	COP9 signalosome subunit 7A
chr7_-_70480724 Show fit	0.00	ENSRNOT00000090057	Dtx3 Links NCBI RGD Ensembl Show fit	deltex E3 ubiquitin ligase 3
chr5_-_147303346 Show fit	0.00	ENSRNOT00000009153	Hpca Links NCBI RGD Ensembl Show fit	hippocalcin
chr15_+_2740784 Show fit	0.00	ENSRNOT00000067781	Dusp13 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 13
chr4_-_6062641 Show fit	0.00	ENSRNOT00000074846	Cct8l1 Links NCBI RGD Ensembl Show fit	chaperonin containing TCP1, subunit 8 (theta)-like 1
chr4_+_147274107 Show fit	0.00	ENSRNOT00000082969	Pparg Links NCBI RGD Ensembl Show fit	peroxisome proliferator-activated receptor gamma
chr4_-_45332420 Show fit	0.00	ENSRNOT00000083039	Wnt2 Links NCBI RGD Ensembl Show fit	wingless-type MMTV integration site family member 2
chr17_+_90802393 Show fit	0.00	ENSRNOT00000003535	Edaradd Links NCBI RGD Ensembl Show fit	EDAR-associated death domain

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0010841	positive regulation of circadian sleep/wake cycle, wakefulness(GO:0010841)
0.0	0.2	GO:0002857	positive regulation of natural killer cell mediated immune response to tumor cell(GO:0002857) positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target(GO:0002860)
0.0	0.1	GO:0061084	negative regulation of protein refolding(GO:0061084)
0.0	0.1	GO:1990086	lens fiber cell apoptotic process(GO:1990086)
0.0	0.0	GO:0021918	pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)
0.0	0.0	GO:0071298	cellular response to L-ascorbic acid(GO:0071298)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0030023	extracellular matrix constituent conferring elasticity(GO:0030023)