GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Pou6f2 Links NCBI RGD Ensembl	ENSRNOG00000013237	POU domain, class 6, transcription factor 2
Pou4f2 Links NCBI RGD Ensembl	ENSRNOG00000012167	POU class 4 homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Pou6f2	rn6_v1_chr17_+_49322205_49322205	-0.50	3.9e-01	Click!
Pou4f2	rn6_v1_chr19_+_33160180_33160180	-0.20	7.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_2174131 Show fit	0.38	ENSRNOT00000001313	Pcp2 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr3_-_66417741 Show fit	0.15	ENSRNOT00000007662	Neurod1 Links NCBI RGD Ensembl Show fit	neuronal differentiation 1
chr2_+_122877286 Show fit	0.15	ENSRNOT00000033080	Arse Links NCBI RGD Ensembl Show fit	arylsulfatase E
chr13_+_71107465 Show fit	0.13	ENSRNOT00000003239	Rgs8 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 8
chr12_-_17186679 Show fit	0.13	ENSRNOT00000001730	Uncx Links NCBI RGD Ensembl Show fit	UNC homeobox
chr13_+_90723092 Show fit	0.11	ENSRNOT00000010146	Kcnj10 Links NCBI RGD Ensembl Show fit	ATP-sensitive inward rectifier potassium channel 10
chr2_+_145174876 Show fit	0.11	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr19_-_58735173 Show fit	0.08	ENSRNOT00000030077	Pcnx2 Links NCBI RGD Ensembl Show fit	pecanex homolog 2 (Drosophila)
chr12_-_45801842 Show fit	0.08	ENSRNOT00000078837	AABR07036513.1 Links NCBI RGD Ensembl Show fit
chr1_+_40879747 Show fit	0.07	ENSRNOT00000083702	Akap12 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 12
chr10_+_55927223 Show fit	0.06	ENSRNOT00000011523	Kcnab3 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily A regulatory beta subunit 3
chr2_-_32518643 Show fit	0.06	ENSRNOT00000061032	Mast4 Links NCBI RGD Ensembl Show fit	microtubule associated serine/threonine kinase family member 4
chr2_+_207930796 Show fit	0.06	ENSRNOT00000047827	Kcnd3 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily D member 3
chr5_+_139790395 Show fit	0.06	ENSRNOT00000015033	Rims3 Links NCBI RGD Ensembl Show fit	regulating synaptic membrane exocytosis 3
chr16_+_23668595 Show fit	0.05	ENSRNOT00000067886	Psd3 Links NCBI RGD Ensembl Show fit	pleckstrin and Sec7 domain containing 3
chr5_-_12526962 Show fit	0.05	ENSRNOT00000092104	St18 Links NCBI RGD Ensembl Show fit	suppression of tumorigenicity 18
chr9_+_71915421 Show fit	0.05	ENSRNOT00000020447	Pikfyve Links NCBI RGD Ensembl Show fit	phosphoinositide kinase, FYVE-type zinc finger containing
chr1_+_190666149 Show fit	0.05	ENSRNOT00000089361	LOC102547219 Links NCBI RGD Ensembl Show fit	uncharacterized LOC102547219
chr4_+_68656928 Show fit	0.04	ENSRNOT00000016232	Tas2r108 Links NCBI RGD Ensembl Show fit	taste receptor, type 2, member 108
chr2_+_2729829 Show fit	0.04	ENSRNOT00000017068	Spata9 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 9
chr6_+_73553210 Show fit	0.04	ENSRNOT00000006562	Akap6 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 6
chr9_+_73378057 Show fit	0.04	ENSRNOT00000043627 ENSRNOT00000045766 ENSRNOT00000092445 ENSRNOT00000037974	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr6_-_44363915 Show fit	0.04	ENSRNOT00000085925	Id2 Links NCBI RGD Ensembl Show fit	inhibitor of DNA binding 2, HLH protein
chr6_-_67084234 Show fit	0.04	ENSRNOT00000050372	Nova1 Links NCBI RGD Ensembl Show fit	NOVA alternative splicing regulator 1
chr15_-_109394905 Show fit	0.04	ENSRNOT00000019602 ENSRNOT00000078424	Tmtc4 Links NCBI RGD Ensembl Show fit	transmembrane and tetratricopeptide repeat containing 4
chr3_+_48106099 Show fit	0.04	ENSRNOT00000007218	Slc4a10 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 10
chr2_-_187786700 Show fit	0.04	ENSRNOT00000092257 ENSRNOT00000092612 ENSRNOT00000068360	Slc25a44 Links NCBI RGD Ensembl Show fit	solute carrier family 25, member 44
chr18_+_30880020 Show fit	0.04	ENSRNOT00000060468	Pcdhgb5 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily B, 5
chr6_+_146784915 Show fit	0.03	ENSRNOT00000008362	Sp8 Links NCBI RGD Ensembl Show fit	Sp8 transcription factor
chr18_-_31071371 Show fit	0.03	ENSRNOT00000060432	Diaph1 Links NCBI RGD Ensembl Show fit	diaphanous-related formin 1
chr1_+_141767940 Show fit	0.03	ENSRNOT00000064034	Zfp710 Links NCBI RGD Ensembl Show fit	zinc finger protein 710
chr12_+_10577068 Show fit	0.03	ENSRNOT00000001282	Rnf6 Links NCBI RGD Ensembl Show fit	ring finger protein 6
chr8_+_76754492 Show fit	0.03	ENSRNOT00000085727	Myo1e Links NCBI RGD Ensembl Show fit	myosin IE
chr10_-_87286387 Show fit	0.02	ENSRNOT00000044206	Krt28 Links NCBI RGD Ensembl Show fit	keratin 28
chr1_-_87825333 Show fit	0.02	ENSRNOT00000072689	Zfp74 Links NCBI RGD Ensembl Show fit	zinc finger protein 74
chr3_-_80933283 Show fit	0.02	ENSRNOT00000007771	Creb3l1 Links NCBI RGD Ensembl Show fit	cAMP responsive element binding protein 3-like 1
chr8_+_103337472 Show fit	0.02	ENSRNOT00000049729	Paqr9 Links NCBI RGD Ensembl Show fit	progestin and adipoQ receptor family member 9
chr18_-_49937522 Show fit	0.02	ENSRNOT00000033254	Zfp608 Links NCBI RGD Ensembl Show fit	zinc finger protein 608
chrX_+_86126157 Show fit	0.02	ENSRNOT00000006992	Klhl4 Links NCBI RGD Ensembl Show fit	kelch-like family member 4
chr20_+_45458558 Show fit	0.02	ENSRNOT00000000713	Cdk19 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 19
chr1_+_157920786 Show fit	0.02	ENSRNOT00000014284	Fam181b Links NCBI RGD Ensembl Show fit	family with sequence similarity 181, member B
chr3_-_37803112 Show fit	0.02	ENSRNOT00000059461	Neb Links NCBI RGD Ensembl Show fit	nebulin
chr8_-_132753145 Show fit	0.02	ENSRNOT00000007467 ENSRNOT00000008172	RGD1566368 Links NCBI RGD Ensembl Show fit	similar to Solute carrier family 6 (neurotransmitter transporter), member 20
chrX_-_157200981 Show fit	0.02	ENSRNOT00000087364	AABR07071935.1 Links NCBI RGD Ensembl Show fit
chr13_-_60567882 Show fit	0.02	ENSRNOT00000004701	Trove2 Links NCBI RGD Ensembl Show fit	TROVE domain family, member 2
chr1_+_217345154 Show fit	0.02	ENSRNOT00000092516	Shank2 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 2
chr5_-_109651730 Show fit	0.01	ENSRNOT00000093032	Elavl2 Links NCBI RGD Ensembl Show fit	ELAV like RNA binding protein 2
chr4_+_120672152 Show fit	0.01	ENSRNOT00000077231	Mgll Links NCBI RGD Ensembl Show fit	monoglyceride lipase
chr1_-_72311856 Show fit	0.01	ENSRNOT00000021286	Epn1 Links NCBI RGD Ensembl Show fit	Epsin 1
chr3_-_57607683 Show fit	0.01	ENSRNOT00000093222 ENSRNOT00000058524	Mettl8 Links NCBI RGD Ensembl Show fit	methyltransferase like 8
chr18_-_26656879 Show fit	0.01	ENSRNOT00000086729	Epb41l4a Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 4A
chr8_-_39551700 Show fit	0.01	ENSRNOT00000091894 ENSRNOT00000076025	Pknox2 Links NCBI RGD Ensembl Show fit	PBX/knotted 1 homeobox 2
chr10_-_29450644 Show fit	0.01	ENSRNOT00000087937	Adra1b Links NCBI RGD Ensembl Show fit	adrenoceptor alpha 1B
chr4_+_181315444 Show fit	0.01	ENSRNOT00000044147	Ppfibp1 Links NCBI RGD Ensembl Show fit	PPFIA binding protein 1
chr15_+_4064706 Show fit	0.01	ENSRNOT00000011956	Synpo2l Links NCBI RGD Ensembl Show fit	synaptopodin 2-like
chr5_-_58198782 Show fit	0.01	ENSRNOT00000023951	Ccl21 Links NCBI RGD Ensembl Show fit	C-C motif chemokine ligand 21
chr11_-_86303453 Show fit	0.01	ENSRNOT00000071453	LOC498122 Links NCBI RGD Ensembl Show fit	similar to CG15908-PA
chr19_-_50220455 Show fit	0.01	ENSRNOT00000079760	Sdr42e1 Links NCBI RGD Ensembl Show fit	short chain dehydrogenase/reductase family 42E, member 1
chr1_-_134871167 Show fit	0.01	ENSRNOT00000076300	Chd2 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 2
chr1_-_131460473 Show fit	0.01	ENSRNOT00000084336	Nr2f2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group F, member 2
chr2_-_205212681 Show fit	0.01	ENSRNOT00000022575	Tshb Links NCBI RGD Ensembl Show fit	thyroid stimulating hormone, beta
chr5_-_7941822 Show fit	0.01	ENSRNOT00000079917	Prex2 Links NCBI RGD Ensembl Show fit	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
chr7_+_123260607 Show fit	0.01	ENSRNOT00000066849	Xrcc6 Links NCBI RGD Ensembl Show fit	X-ray repair cross complementing 6
chr11_-_62067655 Show fit	0.01	ENSRNOT00000093382	Zbtb20 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 20
chr6_+_8284878 Show fit	0.00	ENSRNOT00000009581	Slc3a1 Links NCBI RGD Ensembl Show fit	solute carrier family 3 member 1
chr7_+_41475163 Show fit	0.00	ENSRNOT00000037844	Dusp6 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 6
chr9_-_73799427 Show fit	0.00	ENSRNOT00000067589	Kansl1l Links NCBI RGD Ensembl Show fit	KAT8 regulatory NSL complex subunit 1-like
chr19_+_6046665 Show fit	0.00	ENSRNOT00000084126	Cdh8 Links NCBI RGD Ensembl Show fit	cadherin 8
chr10_-_87484935 Show fit	0.00	ENSRNOT00000016752	Krtap3-1 Links NCBI RGD Ensembl Show fit	keratin associated protein 3-1
chr1_+_261291870 Show fit	0.00	ENSRNOT00000049914	Hoga1 Links NCBI RGD Ensembl Show fit	4-hydroxy-2-oxoglutarate aldolase 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.0	0.1	GO:0051935	amino acid neurotransmitter reuptake(GO:0051933) glutamate reuptake(GO:0051935)
0.0	0.1	GO:0060729	intestinal epithelial structure maintenance(GO:0060729)
0.0	0.1	GO:0035726	common myeloid progenitor cell proliferation(GO:0035726)
0.0	0.0	GO:0001966	thigmotaxis(GO:0001966)
0.0	0.1	GO:0060159	regulation of dopamine receptor signaling pathway(GO:0060159)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0014701	junctional sarcoplasmic reticulum membrane(GO:0014701)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0015272	ATP-activated inward rectifier potassium channel activity(GO:0015272)
0.0	0.1	GO:0004065	arylsulfatase activity(GO:0004065)
0.0	0.1	GO:0005250	A-type (transient outward) potassium channel activity(GO:0005250)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME THE ACTIVATION OF ARYLSULFATASES	Genes involved in The activation of arylsulfatases