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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Hmx1

Z-value: 0.43

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Transcription factors associated with Hmx1

Gene Symbol Gene ID Gene Info
ENSRNOG00000009154 H6 family homeobox 1

Activity profile of Hmx1 motif

Sorted Z-values of Hmx1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr3_-_9037942 0.32 ENSRNOT00000036770
immediate early response 5-like
chr1_-_190370499 0.30 ENSRNOT00000084389

chr8_+_114866768 0.28 ENSRNOT00000076731
WD repeat domain 82
chr3_-_141411170 0.22 ENSRNOT00000017364
NK2 homeobox 2
chr10_-_85574889 0.22 ENSRNOT00000072274
hypothetical protein LOC691153
chr1_-_261446570 0.21 ENSRNOT00000020182
secreted frizzled-related protein 5
chr10_+_103874383 0.19 ENSRNOT00000038935
otopetrin 2
chr15_-_34198921 0.15 ENSRNOT00000024991
neural retina leucine zipper
chr15_+_93634820 0.13 ENSRNOT00000093318
ceroid-lipofuscinosis, neuronal 5
chr9_-_82699551 0.10 ENSRNOT00000020673
obscurin-like 1
chr7_+_11737293 0.10 ENSRNOT00000046059
leucine rich repeat and Ig domain containing 3
chr20_+_12429315 0.10 ENSRNOT00000001675
poly(rC) binding protein 3
chr10_-_5196892 0.09 ENSRNOT00000083982
C-type lectin domain family 16, member A
chr10_+_90731865 0.08 ENSRNOT00000064429
ADAM metallopeptidase domain 11
chr10_-_90265017 0.08 ENSRNOT00000064283
ENSRNOT00000048418
upstream binding transcription factor, RNA polymerase I
chr3_+_148579920 0.07 ENSRNOT00000012432
HCK proto-oncogene, Src family tyrosine kinase
chr17_+_49417067 0.07 ENSRNOT00000090024
POU domain, class 6, transcription factor 2
chrX_-_111942749 0.07 ENSRNOT00000087583

chr10_+_83231238 0.07 ENSRNOT00000077625
speckle type BTB/POZ protein
chr13_+_47602692 0.07 ENSRNOT00000038822
Fc fragment of IgM receptor
chr1_-_218100272 0.06 ENSRNOT00000028411
ENSRNOT00000088588
cyclin D1
chr1_-_2017488 0.06 ENSRNOT00000021905
TGF-beta activated kinase 1/MAP3K7 binding protein 2
chr2_-_25095106 0.06 ENSRNOT00000051653
ENSRNOT00000085857
angiogenic factor with G patch and FHA domains 1
chr9_+_94324793 0.06 ENSRNOT00000092493
eukaryotic translation initiation factor 4E family member 2
chr3_+_11679530 0.06 ENSRNOT00000074562
ENSRNOT00000071801
endoglin
chr6_-_135829953 0.06 ENSRNOT00000080623
ENSRNOT00000039059
CDC42 binding protein kinase beta
chr4_-_159697207 0.06 ENSRNOT00000086440
cyclin D2
chr7_-_122963299 0.06 ENSRNOT00000090208
RAN GTPase activating protein 1
chr5_-_169658875 0.06 ENSRNOT00000015840
potassium voltage-gated channel subfamily A regulatory beta subunit 2
chr14_-_12387102 0.05 ENSRNOT00000038872
bone morphogenetic protein 3
chr15_-_33333417 0.05 ENSRNOT00000018982
apoptotic chromatin condensation inducer 1
chr3_+_11921715 0.05 ENSRNOT00000021689
family with sequence similarity 129, member B
chr4_+_130172727 0.05 ENSRNOT00000051121
melanogenesis associated transcription factor
chr7_-_120380200 0.05 ENSRNOT00000014878
similar to RIKEN cDNA 1700088E04
chr3_-_175327689 0.05 ENSRNOT00000082981
TATA-box binding protein associated factor 4
chr12_+_41385241 0.05 ENSRNOT00000074974
deltex E3 ubiquitin ligase 1
chr6_-_92760018 0.05 ENSRNOT00000009560
tripartite motif-containing 9
chr10_-_47724499 0.05 ENSRNOT00000085011
ring finger protein 112
chr10_+_104523996 0.05 ENSRNOT00000065339
ENSRNOT00000086747
integrin subunit beta 4
chr2_-_188553289 0.05 ENSRNOT00000088822
tripartite motif-containing 46
chr15_-_61564695 0.05 ENSRNOT00000068216
regulator of cell cycle
chr7_+_133856101 0.04 ENSRNOT00000038686
PDZ domain containing RING finger 4
chr4_+_58053041 0.04 ENSRNOT00000072698
mesoderm specific transcript
chr4_+_173115125 0.04 ENSRNOT00000074673
serine-threonine kinase receptor-associated protein-like
chrX_-_116638508 0.04 ENSRNOT00000030400
lipoma HMGIC fusion partner-like 1
chr7_-_119797098 0.04 ENSRNOT00000009994
ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)
chr8_+_117347029 0.04 ENSRNOT00000047717
inosine monophosphate dehydrogenase 2
chr19_-_58735173 0.04 ENSRNOT00000030077
pecanex homolog 2 (Drosophila)
chr17_+_26785029 0.03 ENSRNOT00000022065
eukaryotic translation elongation factor 1 epsilon 1
chr6_+_26390689 0.03 ENSRNOT00000079762
ENSRNOT00000091528
intraflagellar transport 172
chr5_-_113532878 0.03 ENSRNOT00000010173
caspase activity and apoptosis inhibitor 1
chr4_+_140703619 0.03 ENSRNOT00000009563
basic helix-loop-helix family, member e40
chr17_-_42031265 0.03 ENSRNOT00000068021
doublecortin domain containing 2
chr10_-_103685844 0.03 ENSRNOT00000064284
Cd300 molecule-like family member F
chr10_+_4957326 0.03 ENSRNOT00000003458
suppressor of cytokine signaling 1
chr17_-_9792007 0.03 ENSRNOT00000021596
regulator of G-protein signaling 14
chr1_-_262014066 0.03 ENSRNOT00000087083
HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
chr10_-_31359699 0.03 ENSRNOT00000081280
cytoplasmic FMR1 interacting protein 2
chr2_-_143931940 0.03 ENSRNOT00000086214
exosome component 8
chr5_+_152681101 0.03 ENSRNOT00000076052
ENSRNOT00000022574
stathmin 1
chr8_+_33816386 0.03 ENSRNOT00000011925
ETS proto-oncogene 1, transcription factor
chr20_-_3299420 0.03 ENSRNOT00000090999
G protein nucleolar 1
chr5_+_148193710 0.02 ENSRNOT00000088568
adhesion G protein-coupled receptor B2
chr11_+_47061354 0.02 ENSRNOT00000039997
PEST proteolytic signal containing nuclear protein
chr1_+_261229347 0.02 ENSRNOT00000018485
ubiquitin domain containing 1
chr2_+_57206613 0.02 ENSRNOT00000082694
ENSRNOT00000046069
nucleoporin 155
chr5_-_109621170 0.02 ENSRNOT00000093007
ELAV like RNA binding protein 2
chr7_+_145117951 0.02 ENSRNOT00000055272
phosphodiesterase 1B
chr8_-_118182559 0.02 ENSRNOT00000084838
DExH-box helicase 30
chr11_-_86303453 0.02 ENSRNOT00000071453
similar to CG15908-PA
chr15_-_35113678 0.02 ENSRNOT00000059677
cathepsin G
chr15_-_93307420 0.02 ENSRNOT00000012195
SLIT and NTRK-like family, member 1
chr14_+_75852060 0.02 ENSRNOT00000075975
heparan sulfate-glucosamine 3-sulfotransferase 1
chr9_-_54457753 0.02 ENSRNOT00000020032
signal transducer and activator of transcription 1
chr10_-_4910305 0.02 ENSRNOT00000033122
RecQ mediated genome instability 2
chr6_+_137184820 0.02 ENSRNOT00000073796
adenylosuccinate synthase like 1
chr7_-_11478489 0.02 ENSRNOT00000027272
mitogen activated protein kinase kinase 2
chr10_-_105787803 0.02 ENSRNOT00000064671
jumonji domain containing 6
chr10_-_64862268 0.02 ENSRNOT00000056234
PHD finger protein 12
chr1_-_67390141 0.02 ENSRNOT00000025808
SH3 domain binding kinase 1
chr11_-_53731779 0.02 ENSRNOT00000002684
intraflagellar transport 57
chr10_+_55275411 0.02 ENSRNOT00000065895
myosin heavy chain 10
chr17_-_9791781 0.02 ENSRNOT00000090536
regulator of G-protein signaling 14
chr8_+_67295727 0.02 ENSRNOT00000020443
acidic nuclear phosphoprotein 32 family member A
chr10_+_15620871 0.02 ENSRNOT00000089435
ENSRNOT00000066430
NPR3-like, GATOR1 complex subunit
chr15_-_18882959 0.02 ENSRNOT00000066546
ENSRNOT00000088264
filamin B
chr7_+_119647375 0.02 ENSRNOT00000046563
potassium channel tetramerization domain containing 17
chr10_+_43224269 0.02 ENSRNOT00000003473
SAP30-like
chr4_-_157252104 0.02 ENSRNOT00000082739
protein tyrosine phosphatase, non-receptor type 6
chr13_+_52147555 0.02 ENSRNOT00000084766
leiomodin 1
chr8_+_114867062 0.01 ENSRNOT00000074771
WD repeat domain 82
chr7_-_140291620 0.01 ENSRNOT00000088323
adenylate cyclase 6
chr2_+_69415057 0.01 ENSRNOT00000013152
cadherin 10
chrX_+_156463953 0.01 ENSRNOT00000079889
filamin A
chr10_-_109802739 0.01 ENSRNOT00000054951
sirtuin 7
chr4_+_61912210 0.01 ENSRNOT00000013569
bisphosphoglycerate mutase
chr11_-_38274217 0.01 ENSRNOT00000002206
receptor-interacting serine-threonine kinase 4
chr5_-_150439959 0.01 ENSRNOT00000014506
glucocorticoid modulatory element binding protein 1
chr3_-_122947075 0.01 ENSRNOT00000082369
PC-esterase domain containing 1A
chr1_-_219853329 0.01 ENSRNOT00000026169
leucine rich repeat and fibronectin type III domain containing 4
chr2_-_197935567 0.01 ENSRNOT00000085404
regulation of nuclear pre-mRNA domain containing 2
chr20_+_3299730 0.01 ENSRNOT00000078538
proline rich 3
chr14_-_10749120 0.01 ENSRNOT00000003046
COP9 signalosome subunit 4
chr5_+_2813131 0.01 ENSRNOT00000009530
somatomedin B and thrombospondin, type 1 domain containing
chr16_+_71810377 0.01 ENSRNOT00000041330
ADAM metallopeptidase domain 9
chr16_-_49820235 0.01 ENSRNOT00000029628
sorbin and SH3 domain containing 2
chr16_-_3912148 0.01 ENSRNOT00000014941
annexin A11
chr13_+_57131395 0.01 ENSRNOT00000017884
potassium sodium-activated channel subfamily T member 2
chr15_+_33544312 0.01 ENSRNOT00000020409
Bcl2-like 2
chr17_+_33408722 0.01 ENSRNOT00000023691
GDP-mannose 4, 6-dehydratase
chrX_-_105622156 0.01 ENSRNOT00000029511
armadillo repeat containing, X-linked 2
chr3_+_2490518 0.01 ENSRNOT00000015099
anaphase promoting complex subunit 2
chr20_+_5509059 0.01 ENSRNOT00000065349
kinesin family member C1
chr20_-_3299580 0.01 ENSRNOT00000050373
G protein nucleolar 1
chr8_-_53899669 0.01 ENSRNOT00000082257
neural cell adhesion molecule 1
chr5_+_135074297 0.01 ENSRNOT00000000157
phosphoinositide-3-kinase regulatory subunit 3
chr13_+_52553775 0.01 ENSRNOT00000011991
cysteine and glycine-rich protein 1
chr10_-_31419235 0.01 ENSRNOT00000059496
cytoplasmic FMR1 interacting protein 2
chr8_+_117062884 0.01 ENSRNOT00000082452
ENSRNOT00000071540
nicolin 1
chr1_-_213907144 0.01 ENSRNOT00000054874
single Ig and TIR domain containing
chr2_+_205553163 0.01 ENSRNOT00000039572
neuroblastoma RAS viral oncogene homolog
chr8_+_50310405 0.01 ENSRNOT00000073507
SIK family kinase 3
chr19_+_56435577 0.00 ENSRNOT00000092145
ras homolog family member U
chr10_+_109904259 0.00 ENSRNOT00000073886
ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)
chr7_-_140454268 0.00 ENSRNOT00000081468
wingless-type MMTV integration site family, member 10B
chr6_-_26792808 0.00 ENSRNOT00000010403
abhydrolase domain containing 1
chr19_+_24044103 0.00 ENSRNOT00000004621
ring finger protein 150
chr3_-_177089199 0.00 ENSRNOT00000020873
zinc finger protein 512B
chr7_-_121058029 0.00 ENSRNOT00000068033
chromobox 6
chr19_+_37252843 0.00 ENSRNOT00000021145
E2F transcription factor 4
chr7_+_120140460 0.00 ENSRNOT00000040513
ENSRNOT00000073905
pyridoxal phosphatase
chr12_+_17735740 0.00 ENSRNOT00000001775
platelet derived growth factor subunit A
chr1_+_50828585 0.00 ENSRNOT00000086441
ENSRNOT00000023290
ENSRNOT00000035402
protein quaking-like
chr5_+_48374096 0.00 ENSRNOT00000010172
gamma-aminobutyric acid type A receptor rho 1 subunit

Network of associatons between targets according to the STRING database.

First level regulatory network of Hmx1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0021529 spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530)
0.1 0.2 GO:2000041 Wnt signaling pathway involved in digestive tract morphogenesis(GO:0044333) regulation of planar cell polarity pathway involved in axis elongation(GO:2000040) negative regulation of planar cell polarity pathway involved in axis elongation(GO:2000041)
0.0 0.1 GO:0007468 regulation of rhodopsin gene expression(GO:0007468)
0.0 0.1 GO:1902659 regulation of glucose mediated signaling pathway(GO:1902659)
0.0 0.1 GO:1904426 positive regulation of GTP binding(GO:1904426)
0.0 0.1 GO:1905072 cardiac jelly development(GO:1905072)
0.0 0.0 GO:0035544 negative regulation of SNARE complex assembly(GO:0035544)
0.0 0.0 GO:0003330 regulation of extracellular matrix constituent secretion(GO:0003330) positive regulation of extracellular matrix constituent secretion(GO:0003331)
0.0 0.0 GO:0010070 zygote asymmetric cell division(GO:0010070)
0.0 0.3 GO:0080182 histone H3-K4 trimethylation(GO:0080182)
0.0 0.1 GO:1901098 positive regulation of autophagosome maturation(GO:1901098)
0.0 0.1 GO:0030263 apoptotic chromosome condensation(GO:0030263)
0.0 0.1 GO:0000320 re-entry into mitotic cell cycle(GO:0000320)
0.0 0.1 GO:0071688 striated muscle myosin thick filament assembly(GO:0071688)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0072357 PTW/PP1 phosphatase complex(GO:0072357)
0.0 0.1 GO:1990723 cytoplasmic periphery of the nuclear pore complex(GO:1990723)
0.0 0.1 GO:0061574 ASAP complex(GO:0061574)
0.0 0.1 GO:1990393 3M complex(GO:1990393)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:1990829 C-rich single-stranded DNA binding(GO:1990829)
0.0 0.1 GO:0005534 galactose binding(GO:0005534)
0.0 0.3 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0 0.1 GO:0043522 leucine zipper domain binding(GO:0043522)