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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Hmx1
Z-value: 0.43
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Transcription factors associated with Hmx1
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr3_-_9037942 Show fit | 0.32 |
ENSRNOT00000036770
|
immediate early response 5-like |
|
| chr1_-_190370499 Show fit | 0.30 |
ENSRNOT00000084389
|
|
|
| chr8_+_114866768 Show fit | 0.28 |
ENSRNOT00000076731
|
WD repeat domain 82 |
|
| chr3_-_141411170 Show fit | 0.22 |
ENSRNOT00000017364
|
NK2 homeobox 2 |
|
| chr10_-_85574889 Show fit | 0.22 |
ENSRNOT00000072274
|
hypothetical protein LOC691153 |
|
| chr1_-_261446570 Show fit | 0.21 |
ENSRNOT00000020182
|
secreted frizzled-related protein 5 |
|
| chr10_+_103874383 Show fit | 0.19 |
ENSRNOT00000038935
|
otopetrin 2 |
|
| chr15_-_34198921 Show fit | 0.15 |
ENSRNOT00000024991
|
neural retina leucine zipper |
|
| chr15_+_93634820 Show fit | 0.13 |
ENSRNOT00000093318
|
ceroid-lipofuscinosis, neuronal 5 |
|
| chr9_-_82699551 Show fit | 0.10 |
ENSRNOT00000020673
|
obscurin-like 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Hmx1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0080182 | histone H3-K4 trimethylation(GO:0080182) |
| 0.1 | 0.2 | GO:0021529 | spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530) |
| 0.1 | 0.2 | GO:2000041 | Wnt signaling pathway involved in digestive tract morphogenesis(GO:0044333) regulation of planar cell polarity pathway involved in axis elongation(GO:2000040) negative regulation of planar cell polarity pathway involved in axis elongation(GO:2000041) |
| 0.0 | 0.1 | GO:0007468 | regulation of rhodopsin gene expression(GO:0007468) |
| 0.0 | 0.1 | GO:1902659 | regulation of glucose mediated signaling pathway(GO:1902659) |
| 0.0 | 0.1 | GO:1904426 | positive regulation of GTP binding(GO:1904426) |
| 0.0 | 0.1 | GO:1905072 | cardiac jelly development(GO:1905072) |
| 0.0 | 0.1 | GO:1901098 | positive regulation of autophagosome maturation(GO:1901098) |
| 0.0 | 0.1 | GO:0030263 | apoptotic chromosome condensation(GO:0030263) |
| 0.0 | 0.1 | GO:0000320 | re-entry into mitotic cell cycle(GO:0000320) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0072357 | PTW/PP1 phosphatase complex(GO:0072357) |
| 0.0 | 0.1 | GO:1990723 | cytoplasmic periphery of the nuclear pore complex(GO:1990723) |
| 0.0 | 0.1 | GO:0061574 | ASAP complex(GO:0061574) |
| 0.0 | 0.1 | GO:1990393 | 3M complex(GO:1990393) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
| 0.0 | 0.1 | GO:1990829 | C-rich single-stranded DNA binding(GO:1990829) |
| 0.0 | 0.1 | GO:0005534 | galactose binding(GO:0005534) |
| 0.0 | 0.1 | GO:0043522 | leucine zipper domain binding(GO:0043522) |