GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Gcm1 Links NCBI RGD Ensembl	ENSRNOG00000007932	glial cells missing homolog 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Gcm1	rn6_v1_chr8_+_85355766_85355766	-0.62	2.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_-_115910522 Show fit	0.19	ENSRNOT00000076998 ENSRNOT00000067442	Arc Links NCBI RGD Ensembl Show fit	activity-regulated cytoskeleton-associated protein
chr14_+_104191517 Show fit	0.17	ENSRNOT00000006573	Spred2 Links NCBI RGD Ensembl Show fit	sprouty-related, EVH1 domain containing 2
chr7_-_12424367 Show fit	0.14	ENSRNOT00000060698	Midn Links NCBI RGD Ensembl Show fit	midnolin
chr9_+_118586179 Show fit	0.13	ENSRNOT00000022351	Dlgap1 Links NCBI RGD Ensembl Show fit	DLG associated protein 1
chr10_+_61685645 Show fit	0.11	ENSRNOT00000003933	Mnt Links NCBI RGD Ensembl Show fit	MAX network transcriptional repressor
chr3_+_156642464 Show fit	0.11	ENSRNOT00000085354	Top1 Links NCBI RGD Ensembl Show fit	topoisomerase (DNA) I
chr1_-_125967756 Show fit	0.11	ENSRNOT00000031488	Fam189a1 Links NCBI RGD Ensembl Show fit	family with sequence similarity 189, member A1
chrX_+_62363757 Show fit	0.10	ENSRNOT00000091240	Arx Links NCBI RGD Ensembl Show fit	aristaless related homeobox
chr3_+_108944141 Show fit	0.10	ENSRNOT00000034950	Fam98b Links NCBI RGD Ensembl Show fit	family with sequence similarity 98, member B
chr6_+_135610743 Show fit	0.09	ENSRNOT00000010906	Traf3 Links NCBI RGD Ensembl Show fit	Tnf receptor-associated factor 3
chrX_+_62363953 Show fit	0.09	ENSRNOT00000083362	Arx Links NCBI RGD Ensembl Show fit	aristaless related homeobox
chr13_+_75105615 Show fit	0.09	ENSRNOT00000076653	Tp53i3 Links NCBI RGD Ensembl Show fit	tumor protein p53 inducible protein 3
chr7_-_12831675 Show fit	0.09	ENSRNOT00000011936	Fgf22 Links NCBI RGD Ensembl Show fit	fibroblast growth factor 22
chrX_+_55331389 Show fit	0.09	ENSRNOT00000075300	AABR07038567.1 Links NCBI RGD Ensembl Show fit
chr6_-_49324450 Show fit	0.09	ENSRNOT00000066904	Sntg2 Links NCBI RGD Ensembl Show fit	syntrophin, gamma 2
chr8_-_116361343 Show fit	0.08	ENSRNOT00000066296	Sema3b Links NCBI RGD Ensembl Show fit	semaphorin 3B
chr7_-_122247139 Show fit	0.08	ENSRNOT00000064515	Mkl1 Links NCBI RGD Ensembl Show fit	megakaryoblastic leukemia (translocation) 1
chrX_+_68782872 Show fit	0.07	ENSRNOT00000075995	Stard8 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 8
chr10_+_102136283 Show fit	0.07	ENSRNOT00000003735	Sstr2 Links NCBI RGD Ensembl Show fit	somatostatin receptor 2
chr15_+_34187223 Show fit	0.07	ENSRNOT00000024978	Cpne6 Links NCBI RGD Ensembl Show fit	copine 6
chr14_-_78377825 Show fit	0.06	ENSRNOT00000068104	AABR07015812.1 Links NCBI RGD Ensembl Show fit
chr3_+_33440191 Show fit	0.06	ENSRNOT00000034632 ENSRNOT00000092907	Mbd5 Links NCBI RGD Ensembl Show fit	methyl-CpG binding domain protein 5
chr8_+_96551245 Show fit	0.06	ENSRNOT00000039850	Bcl2a1 Links NCBI RGD Ensembl Show fit	BCL2-related protein A1
chr11_-_87158597 Show fit	0.05	ENSRNOT00000002517	Vpreb2 Links NCBI RGD Ensembl Show fit	pre-B lymphocyte gene 2
chr2_-_186480278 Show fit	0.05	ENSRNOT00000031743	Kirrel Links NCBI RGD Ensembl Show fit	kin of IRRE like (Drosophila)
chr5_+_139468546 Show fit	0.05	ENSRNOT00000013193	Slfnl1 Links NCBI RGD Ensembl Show fit	schlafen-like 1
chr6_-_147172022 Show fit	0.05	ENSRNOT00000080675	Itgb8 Links NCBI RGD Ensembl Show fit	integrin subunit beta 8
chr3_-_122947075 Show fit	0.05	ENSRNOT00000082369	Pced1a Links NCBI RGD Ensembl Show fit	PC-esterase domain containing 1A
chr1_-_101131413 Show fit	0.05	ENSRNOT00000093729	Flt3lg Links NCBI RGD Ensembl Show fit	fms-related tyrosine kinase 3 ligand
chr2_+_127459012 Show fit	0.04	ENSRNOT00000093685 ENSRNOT00000072675	Intu Links NCBI RGD Ensembl Show fit	inturned planar cell polarity protein
chr9_+_49479023 Show fit	0.04	ENSRNOT00000050922 ENSRNOT00000077111	Pou3f3 Links NCBI RGD Ensembl Show fit	POU class 3 homeobox 3
chr5_-_151397603 Show fit	0.04	ENSRNOT00000076866	Gpr3 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 3
chr14_-_20953095 Show fit	0.04	ENSRNOT00000004440	Dck Links NCBI RGD Ensembl Show fit	deoxycytidine kinase
chr8_+_7128656 Show fit	0.04	ENSRNOT00000038313	Pgr Links NCBI RGD Ensembl Show fit	progesterone receptor
chr9_+_47386626 Show fit	0.04	ENSRNOT00000021270	Slc9a2 Links NCBI RGD Ensembl Show fit	solute carrier family 9 member A2
chr1_+_266530477 Show fit	0.03	ENSRNOT00000054699	Cnnm2 Links NCBI RGD Ensembl Show fit	cyclin and CBS domain divalent metal cation transport mediator 2
chr13_-_111849653 Show fit	0.03	ENSRNOT00000006395	Diexf Links NCBI RGD Ensembl Show fit	digestive organ expansion factor homolog (zebrafish)
chr11_-_86276430 Show fit	0.03	ENSRNOT00000075164	Hira Links NCBI RGD Ensembl Show fit	histone cell cycle regulator
chr6_+_18821815 Show fit	0.03	ENSRNOT00000062057	Mtm1 Links NCBI RGD Ensembl Show fit	myotubularin 1
chr1_-_101131012 Show fit	0.03	ENSRNOT00000082283 ENSRNOT00000093498 ENSRNOT00000093559	Flt3lg Links NCBI RGD Ensembl Show fit Rpl13a Links NCBI RGD Ensembl Show fit	fms-related tyrosine kinase 3 ligand ribosomal protein L13A
chr2_+_57206613 Show fit	0.03	ENSRNOT00000082694 ENSRNOT00000046069	Nup155 Links NCBI RGD Ensembl Show fit	nucleoporin 155
chr14_-_104523297 Show fit	0.03	ENSRNOT00000039523	Cep68 Links NCBI RGD Ensembl Show fit	centrosomal protein 68
chr3_+_122308025 Show fit	0.03	ENSRNOT00000008071	Stk35 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 35
chrX_+_18998532 Show fit	0.02	ENSRNOT00000004213	AABR07037343.1 Links NCBI RGD Ensembl Show fit
chr15_+_3996328 Show fit	0.02	ENSRNOT00000088252	Ndst2 Links NCBI RGD Ensembl Show fit	N-deacetylase and N-sulfotransferase 2
chr1_-_220165678 Show fit	0.02	ENSRNOT00000026915	Bbs1 Links NCBI RGD Ensembl Show fit	Bardet-Biedl syndrome 1
chr1_+_220423426 Show fit	0.02	ENSRNOT00000072647	Brms1 Links NCBI RGD Ensembl Show fit	breast cancer metastasis-suppressor 1
chr7_+_117963740 Show fit	0.02	ENSRNOT00000075405	LOC108348189 Links NCBI RGD Ensembl Show fit	COMM domain-containing protein 5
chr2_+_243502073 Show fit	0.02	ENSRNOT00000015870	Adh7 Links NCBI RGD Ensembl Show fit	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
chr4_-_7311807 Show fit	0.02	ENSRNOT00000012222 ENSRNOT00000089817	Abcb8 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily B member 8
chr15_+_3996048 Show fit	0.02	ENSRNOT00000078653	Ndst2 Links NCBI RGD Ensembl Show fit	N-deacetylase and N-sulfotransferase 2
chr10_+_1464765 Show fit	0.01	ENSRNOT00000004217	Bfar Links NCBI RGD Ensembl Show fit	bifunctional apoptosis regulator
chr5_-_141033511 Show fit	0.01	ENSRNOT00000045922	Bmp8a Links NCBI RGD Ensembl Show fit	bone morphogenetic protein 8a
chr4_-_113764532 Show fit	0.01	ENSRNOT00000009269	Sema4f Links NCBI RGD Ensembl Show fit	ssemaphorin 4F
chr1_-_201906286 Show fit	0.01	ENSRNOT00000064511 ENSRNOT00000036625	RGD1560958 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1700063I17
chr18_+_3958432 Show fit	0.01	ENSRNOT00000073509	Ttc39c Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 39C
chr19_+_37127508 Show fit	0.01	ENSRNOT00000019656	Cbfb Links NCBI RGD Ensembl Show fit	core-binding factor, beta subunit
chr6_-_50846965 Show fit	0.01	ENSRNOT00000087300	Slc26a4 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 4
chr20_+_50394650 Show fit	0.01	ENSRNOT00000076010 ENSRNOT00000077065 ENSRNOT00000073259	Popdc3 Links NCBI RGD Ensembl Show fit	popeye domain containing 3
chr1_+_53360157 Show fit	0.01	ENSRNOT00000017809	Rps6ka2 Links NCBI RGD Ensembl Show fit	ribosomal protein S6 kinase A2
chr5_+_157165341 Show fit	0.01	ENSRNOT00000087072	Pla2g2c Links NCBI RGD Ensembl Show fit	phospholipase A2, group IIC
chr1_-_259089632 Show fit	0.01	ENSRNOT00000020940 ENSRNOT00000091297	Aldh18a1 Links NCBI RGD Ensembl Show fit	aldehyde dehydrogenase 18 family, member A1
chr5_-_153252021 Show fit	0.01	ENSRNOT00000023221	Tmem50a Links NCBI RGD Ensembl Show fit	transmembrane protein 50A
chr1_-_259674425 Show fit	0.01	ENSRNOT00000091116	LOC108348083 Links NCBI RGD Ensembl Show fit	delta-1-pyrroline-5-carboxylate synthase
chr10_+_105861743 Show fit	0.01	ENSRNOT00000064410	Mgat5b Links NCBI RGD Ensembl Show fit	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
chr16_+_81089292 Show fit	0.01	ENSRNOT00000087192 ENSRNOT00000026150	Tfdp1 Links NCBI RGD Ensembl Show fit	transcription factor Dp-1
chr7_-_117267402 Show fit	0.01	ENSRNOT00000088945	Plec Links NCBI RGD Ensembl Show fit	plectin
chr12_-_21450204 Show fit	0.00	ENSRNOT00000065866	LOC100910636 Links NCBI RGD Ensembl Show fit	zinc finger CW-type PWWP domain protein 1-like
chr19_-_17346808 Show fit	0.00	ENSRNOT00000017361	Rbl2 Links NCBI RGD Ensembl Show fit	RB transcriptional corepressor like 2
chr9_-_85528860 Show fit	0.00	ENSRNOT00000063834 ENSRNOT00000088963	Wdfy1 Links NCBI RGD Ensembl Show fit	WD repeat and FYVE domain containing 1
chr6_-_147172813 Show fit	0.00	ENSRNOT00000066545	Itgb8 Links NCBI RGD Ensembl Show fit	integrin subunit beta 8
chr14_-_3389943 Show fit	0.00	ENSRNOT00000037101	Ephx4 Links NCBI RGD Ensembl Show fit	epoxide hydrolase 4
chr2_-_123323170 Show fit	0.00	ENSRNOT00000021453	Bbs7 Links NCBI RGD Ensembl Show fit	Bardet-Biedl syndrome 7
chr1_+_274245184 Show fit	0.00	ENSRNOT00000018889	Dusp5 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 5
chr10_+_105796680 Show fit	0.00	ENSRNOT00000000264	Mfsd11 Links NCBI RGD Ensembl Show fit	major facilitator superfamily domain containing 11

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0033132	negative regulation of glucokinase activity(GO:0033132) negative regulation of hexokinase activity(GO:1903300)
0.0	0.2	GO:0021759	globus pallidus development(GO:0021759)
0.0	0.1	GO:0090290	positive regulation of osteoclast proliferation(GO:0090290)
0.0	0.2	GO:2000969	positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity(GO:2000969)
0.0	0.1	GO:0060399	positive regulation of growth hormone receptor signaling pathway(GO:0060399)
0.0	0.1	GO:0070842	aggresome assembly(GO:0070842)
0.0	0.1	GO:0071373	cellular response to luteinizing hormone stimulus(GO:0071373)
0.0	0.1	GO:0038170	somatostatin receptor signaling pathway(GO:0038169) somatostatin signaling pathway(GO:0038170)
0.0	0.1	GO:0008063	Toll signaling pathway(GO:0008063)
0.0	0.1	GO:0010735	positive regulation of transcription via serum response element binding(GO:0010735)
0.0	0.0	GO:0072218	ascending thin limb development(GO:0072021) metanephric ascending thin limb development(GO:0072218)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0009330	DNA topoisomerase complex (ATP-hydrolyzing)(GO:0009330)
0.0	0.1	GO:0034686	integrin alphav-beta8 complex(GO:0034686)
0.0	0.1	GO:0072669	tRNA-splicing ligase complex(GO:0072669)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0005173	stem cell factor receptor binding(GO:0005173)
0.0	0.1	GO:0003917	DNA topoisomerase type I activity(GO:0003917)
0.0	0.2	GO:0001206	transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001206)
0.0	0.1	GO:0003960	NADPH:quinone reductase activity(GO:0003960)
0.0	0.1	GO:0004994	somatostatin receptor activity(GO:0004994)
0.0	0.1	GO:0097109	neuroligin family protein binding(GO:0097109)