GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Gbx2 Links NCBI RGD Ensembl	ENSRNOG00000019495	gastrulation brain homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Gbx2	rn6_v1_chr9_-_97065817_97065817	-0.80	1.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr4_-_11497531 Show fit	0.07	ENSRNOT00000078799	Magi2 Links NCBI RGD Ensembl Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 2
chr10_+_11912543 Show fit	0.06	ENSRNOT00000045192	Zfp597 Links NCBI RGD Ensembl Show fit	zinc finger protein 597
chr12_-_17322608 Show fit	0.06	ENSRNOT00000033038	LOC102546864 Links NCBI RGD Ensembl Show fit	uncharacterized LOC102546864
chr9_+_73378057 Show fit	0.05	ENSRNOT00000043627 ENSRNOT00000045766 ENSRNOT00000092445 ENSRNOT00000037974	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr13_+_80464348 Show fit	0.05	ENSRNOT00000076324	Vamp4 Links NCBI RGD Ensembl Show fit	vesicle-associated membrane protein 4
chr2_+_86996497 Show fit	0.05	ENSRNOT00000042058	Zfp455 Links NCBI RGD Ensembl Show fit	zinc finger protein 455
chr13_-_83457888 Show fit	0.04	ENSRNOT00000076289 ENSRNOT00000004065	Sft2d2 Links NCBI RGD Ensembl Show fit	SFT2 domain containing 2
chr2_+_86996798 Show fit	0.04	ENSRNOT00000070821	Zfp455 Links NCBI RGD Ensembl Show fit	zinc finger protein 455
chr8_-_45137893 Show fit	0.04	ENSRNOT00000010743	RGD1309108 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ23554
chr6_-_108660063 Show fit	0.04	ENSRNOT00000006240	Arel1 Links NCBI RGD Ensembl Show fit	apoptosis resistant E3 ubiquitin protein ligase 1
chr2_+_72006099 Show fit	0.04	ENSRNOT00000034044	Cdh12 Links NCBI RGD Ensembl Show fit	cadherin 12
chr2_+_196608496 Show fit	0.04	ENSRNOT00000091681	Arnt Links NCBI RGD Ensembl Show fit	aryl hydrocarbon receptor nuclear translocator
chr3_-_90751055 Show fit	0.04	ENSRNOT00000040741	LOC499843 Links NCBI RGD Ensembl Show fit	LRRGT00091
chr16_+_22361998 Show fit	0.03	ENSRNOT00000016193	Slc18a1 Links NCBI RGD Ensembl Show fit	solute carrier family 18 member A1
chr1_+_220071811 Show fit	0.03	ENSRNOT00000090642	AC126581.1 Links NCBI RGD Ensembl Show fit
chr1_-_78180216 Show fit	0.03	ENSRNOT00000071576	C5ar2 Links NCBI RGD Ensembl Show fit	complement component 5a receptor 2
chr12_-_46493203 Show fit	0.03	ENSRNOT00000057036	Cit Links NCBI RGD Ensembl Show fit	citron rho-interacting serine/threonine kinase
chr3_+_5624506 Show fit	0.03	ENSRNOT00000036995	Adamtsl2 Links NCBI RGD Ensembl Show fit	ADAMTS-like 2
chr3_-_138683318 Show fit	0.03	ENSRNOT00000029701	Dzank1 Links NCBI RGD Ensembl Show fit	double zinc ribbon and ankyrin repeat domains 1
chr11_+_38727048 Show fit	0.02	ENSRNOT00000081537	LOC103690343 Links NCBI RGD Ensembl Show fit	zinc finger protein 260-like
chr2_+_220432037 Show fit	0.02	ENSRNOT00000021988	Frrs1 Links NCBI RGD Ensembl Show fit	ferric-chelate reductase 1
chr3_+_48106099 Show fit	0.02	ENSRNOT00000007218	Slc4a10 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 10
chrX_-_25628272 Show fit	0.02	ENSRNOT00000086414	Mid1 Links NCBI RGD Ensembl Show fit	midline 1
chr16_-_10802512 Show fit	0.02	ENSRNOT00000079554	Bmpr1a Links NCBI RGD Ensembl Show fit	bone morphogenetic protein receptor type 1A
chr2_-_199971965 Show fit	0.02	ENSRNOT00000087026	Pde4dip Links NCBI RGD Ensembl Show fit	phosphodiesterase 4D interacting protein
chr17_-_80860195 Show fit	0.02	ENSRNOT00000038651	Trdmt1 Links NCBI RGD Ensembl Show fit	tRNA aspartic acid methyltransferase 1
chrX_+_84064427 Show fit	0.02	ENSRNOT00000046364	Zfp711 Links NCBI RGD Ensembl Show fit	zinc finger protein 711
chr7_-_14364178 Show fit	0.02	ENSRNOT00000090673	Akap8l Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 8 like
chr2_+_2903492 Show fit	0.02	ENSRNOT00000062017	Ttc37 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 37
chr18_+_52423883 Show fit	0.01	ENSRNOT00000022017	Prrc1 Links NCBI RGD Ensembl Show fit	proline-rich coiled-coil 1
chr1_+_137014272 Show fit	0.01	ENSRNOT00000014802	Akap13 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 13
chr1_-_129776276 Show fit	0.01	ENSRNOT00000051402	Arrdc4 Links NCBI RGD Ensembl Show fit	arrestin domain containing 4
chrX_+_78042859 Show fit	0.01	ENSRNOT00000003286	Lpar4 Links NCBI RGD Ensembl Show fit	lysophosphatidic acid receptor 4
chr11_+_40509078 Show fit	0.01	ENSRNOT00000023108	AABR07033851.1 Links NCBI RGD Ensembl Show fit
chr10_+_95770154 Show fit	0.01	ENSRNOT00000030300	Helz Links NCBI RGD Ensembl Show fit	helicase with zinc finger
chr5_+_135574172 Show fit	0.01	ENSRNOT00000023416	Tesk2 Links NCBI RGD Ensembl Show fit	testis-specific kinase 2
chr12_-_48663143 Show fit	0.01	ENSRNOT00000082809	Ficd Links NCBI RGD Ensembl Show fit	FIC domain containing
chr1_+_228395558 Show fit	0.01	ENSRNOT00000065411	Osbp Links NCBI RGD Ensembl Show fit	oxysterol binding protein
chrX_+_14578264 Show fit	0.01	ENSRNOT00000038994	Cybb Links NCBI RGD Ensembl Show fit	cytochrome b-245 beta chain
chr6_-_136436620 Show fit	0.01	ENSRNOT00000067118	Ppp1r13b Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 13B
chr5_+_163773509 Show fit	0.01	ENSRNOT00000072167	LOC103692519 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L9 pseudogene
chr5_+_163612518 Show fit	0.01	ENSRNOT00000071103	LOC103692519 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L9 pseudogene
chr2_-_189333015 Show fit	0.01	ENSRNOT00000076424 ENSRNOT00000076952	Hax1 Links NCBI RGD Ensembl Show fit	HCLS1 associated protein X-1
chr7_-_107223047 Show fit	0.01	ENSRNOT00000007250 ENSRNOT00000084875	Lrrc6 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 6
chr6_-_127632265 Show fit	0.01	ENSRNOT00000084157	Serpina1 Links NCBI RGD Ensembl Show fit	serpin family A member 1
chrX_+_131381134 Show fit	0.01	ENSRNOT00000007474	AABR07041481.1 Links NCBI RGD Ensembl Show fit
chr2_+_54466280 Show fit	0.01	ENSRNOT00000033112	C6 Links NCBI RGD Ensembl Show fit	complement C6
chr14_-_106248539 Show fit	0.01	ENSRNOT00000067668	Ugp2 Links NCBI RGD Ensembl Show fit	UDP-glucose pyrophosphorylase 2
chr10_-_87521514 Show fit	0.01	ENSRNOT00000084668 ENSRNOT00000071705	Krtap2-4l Links NCBI RGD Ensembl Show fit	keratin associated protein 2-4-like
chr5_-_9035811 Show fit	0.01	ENSRNOT00000082023	Mcmdc2 Links NCBI RGD Ensembl Show fit	minichromosome maintenance domain containing 2
chr20_+_3155652 Show fit	0.01	ENSRNOT00000042882	RT1-S2 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus S2
chr16_+_6048004 Show fit	0.00	ENSRNOT00000020750	Actr8 Links NCBI RGD Ensembl Show fit	ARP8 actin-related protein 8 homolog
chr18_+_16146447 Show fit	0.00	ENSRNOT00000022117	Galnt1 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 1
chr1_-_23556241 Show fit	0.00	ENSRNOT00000072943	LOC100910446 Links NCBI RGD Ensembl Show fit	syntaxin-7-like
chr1_+_147713892 Show fit	0.00	ENSRNOT00000092985 ENSRNOT00000054742 ENSRNOT00000074103	Cyp2c6v1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1
chr1_+_79631668 Show fit	0.00	ENSRNOT00000083546 ENSRNOT00000035286	Mill1 Links NCBI RGD Ensembl Show fit	MHC I like leukocyte 1
chr8_+_79638696 Show fit	0.00	ENSRNOT00000085959	Dyx1c1 Links NCBI RGD Ensembl Show fit	dyslexia susceptibility 1 candidate 1
chr1_+_265157379 Show fit	0.00	ENSRNOT00000022426	Btrc Links NCBI RGD Ensembl Show fit	beta-transducin repeat containing E3 ubiquitin protein ligase
chr14_-_18704059 Show fit	0.00	ENSRNOT00000081455	Mthfd2l Links NCBI RGD Ensembl Show fit	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
chr4_-_169036950 Show fit	0.00	ENSRNOT00000011295	Gsg1 Links NCBI RGD Ensembl Show fit	germ cell associated 1
chr3_-_14386118 Show fit	0.00	ENSRNOT00000025649	Rab14 Links NCBI RGD Ensembl Show fit	RAB14, member RAS oncogene family

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0090024	negative regulation of granulocyte chemotaxis(GO:0071623) negative regulation of neutrophil chemotaxis(GO:0090024)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0070699	type II activin receptor binding(GO:0070699)
0.0	0.0	GO:0004874	aryl hydrocarbon receptor activity(GO:0004874)
0.0	0.0	GO:0015222	serotonin transmembrane transporter activity(GO:0015222)
0.0	0.0	GO:0001847	opsonin receptor activity(GO:0001847)