Project
GSE49485: Hypoxia transcriptome sequencing of rat brain.
Navigation
Downloads
Results for Nkx6-1_Evx1_Hesx1
Z-value: 0.39
Motif logo
Transcription factors associated with Nkx6-1_Evx1_Hesx1
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Nkx6-1 | rn6_v1_chr14_+_9555264_9555264 | 0.56 | 3.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr12_-_2174131 Show fit | 1.61 |
ENSRNOT00000001313
|
Purkinje cell protein 2 |
|
| chr3_-_66417741 Show fit | 0.81 |
ENSRNOT00000007662
|
neuronal differentiation 1 |
|
| chr2_+_145174876 Show fit | 0.53 |
ENSRNOT00000040631
|
mab-21 like 1 |
|
| chr12_-_17186679 Show fit | 0.50 |
ENSRNOT00000001730
|
UNC homeobox |
|
| chr4_+_94696965 Show fit | 0.36 |
ENSRNOT00000064696
|
glutamate ionotropic receptor delta type subunit 2 |
|
| chr4_+_86275717 Show fit | 0.25 |
ENSRNOT00000016414
|
protein phosphatase 1, regulatory subunit 17 |
|
| chr17_+_11683862 Show fit | 0.24 |
ENSRNOT00000024766
|
msh homeobox 2 |
|
| chr1_-_124803363 Show fit | 0.20 |
ENSRNOT00000066380
|
Kruppel-like factor 13 |
|
| chr3_+_95715193 Show fit | 0.20 |
ENSRNOT00000089525
|
paired box 6 |
|
| chr12_-_45801842 Show fit | 0.18 |
ENSRNOT00000078837
|
|
Network of associatons between targets according to the STRING database.
First level regulatory network of Nkx6-1_Evx1_Hesx1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.6 | GO:0016056 | rhodopsin mediated signaling pathway(GO:0016056) |
| 0.2 | 0.8 | GO:0060729 | intestinal epithelial structure maintenance(GO:0060729) |
| 0.1 | 0.5 | GO:0035726 | common myeloid progenitor cell proliferation(GO:0035726) |
| 0.0 | 0.4 | GO:0021684 | cerebellar granular layer formation(GO:0021684) cerebellar granule cell differentiation(GO:0021707) |
| 0.1 | 0.2 | GO:0035880 | embryonic nail plate morphogenesis(GO:0035880) |
| 0.1 | 0.2 | GO:0021917 | pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937) |
| 0.0 | 0.2 | GO:0048251 | elastic fiber assembly(GO:0048251) |
| 0.0 | 0.2 | GO:0002098 | tRNA wobble uridine modification(GO:0002098) |
| 0.0 | 0.2 | GO:0045647 | negative regulation of erythrocyte differentiation(GO:0045647) |
| 0.0 | 0.1 | GO:0035566 | regulation of metanephros size(GO:0035566) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0071953 | elastic fiber(GO:0071953) |
| 0.0 | 0.2 | GO:0071565 | nBAF complex(GO:0071565) |
| 0.0 | 0.1 | GO:0000839 | Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839) |
| 0.0 | 0.1 | GO:1990032 | parallel fiber(GO:1990032) |
| 0.0 | 0.1 | GO:0097441 | basilar dendrite(GO:0097441) |
| 0.0 | 0.1 | GO:0033093 | Weibel-Palade body(GO:0033093) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.8 | GO:0001102 | RNA polymerase II activating transcription factor binding(GO:0001102) |
| 0.0 | 0.4 | GO:0005234 | extracellular-glutamate-gated ion channel activity(GO:0005234) |
| 0.0 | 0.3 | GO:0004865 | protein serine/threonine phosphatase inhibitor activity(GO:0004865) |
| 0.0 | 0.2 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.0 | 0.1 | GO:0016300 | tRNA (uracil) methyltransferase activity(GO:0016300) |
| 0.0 | 0.1 | GO:0003836 | beta-galactoside (CMP) alpha-2,3-sialyltransferase activity(GO:0003836) |
| 0.0 | 0.1 | GO:0030977 | taurine binding(GO:0030977) |
| 0.0 | 0.1 | GO:0008940 | nitrate reductase activity(GO:0008940) |
| 0.0 | 0.1 | GO:0035662 | Toll-like receptor 4 binding(GO:0035662) |
| 0.0 | 0.1 | GO:0000822 | inositol hexakisphosphate binding(GO:0000822) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.1 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
| 0.0 | 0.2 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
| 0.0 | 0.1 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |