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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Nkx6-3_Dbx2_Barx2

Z-value: 0.24

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Transcription factors associated with Nkx6-3_Dbx2_Barx2

Gene Symbol Gene ID Gene Info
ENSRNOG00000018147 NK6 homeobox 3
ENSRNOG00000006885 developing brain homeobox 2
ENSRNOG00000008592 BARX homeobox 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Nkx6-3rn6_v1_chr16_-_73670482_736704820.912.9e-02Click!
Barx2rn6_v1_chr8_-_33017854_330178540.866.4e-02Click!
Dbx2rn6_v1_chr7_-_136997050_1369970500.108.7e-01Click!

Activity profile of Nkx6-3_Dbx2_Barx2 motif

Sorted Z-values of Nkx6-3_Dbx2_Barx2 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr10_+_61685645 0.23 ENSRNOT00000003933
MAX network transcriptional repressor
chr1_-_190370499 0.17 ENSRNOT00000084389

chr9_+_73378057 0.12 ENSRNOT00000043627
ENSRNOT00000045766
ENSRNOT00000092445
ENSRNOT00000037974
microtubule-associated protein 2
chr12_-_35979193 0.12 ENSRNOT00000071104
transmembrane protein 132B
chr18_+_14757679 0.10 ENSRNOT00000071364
microtubule-associated protein, RP/EB family, member 2
chr12_+_25435567 0.09 ENSRNOT00000092982
general transcription factor II I
chr1_+_141767940 0.08 ENSRNOT00000064034
zinc finger protein 710
chr3_+_14889510 0.08 ENSRNOT00000080760
DAB2 interacting protein
chr20_-_13994794 0.08 ENSRNOT00000093466
gamma-glutamyltransferase 5
chr1_-_278042312 0.08 ENSRNOT00000018693
actin-binding LIM protein 1
chr4_-_66955732 0.08 ENSRNOT00000084282
lysine (K)-specific demethylase 7A
chr18_-_43945273 0.07 ENSRNOT00000088900
DTW domain containing 2
chr10_+_103206014 0.07 ENSRNOT00000004081
tweety family member 2
chr2_+_122877286 0.07 ENSRNOT00000033080
arylsulfatase E
chr2_-_33025271 0.07 ENSRNOT00000074941
microtubule associated serine/threonine kinase family member 4
chr9_+_71915421 0.07 ENSRNOT00000020447
phosphoinositide kinase, FYVE-type zinc finger containing
chr5_+_22380334 0.06 ENSRNOT00000009744
clavesin 1
chr3_+_41019898 0.06 ENSRNOT00000007335
potassium voltage-gated channel subfamily J member 3
chr14_+_42015347 0.06 ENSRNOT00000044017
ATPase phospholipid transporting 8A1
chr2_+_195996521 0.06 ENSRNOT00000082849
pogo transposable element with ZNF domain
chr4_-_18396035 0.06 ENSRNOT00000034692
semaphorin 3A
chr9_+_73418607 0.05 ENSRNOT00000092547
microtubule-associated protein 2
chr13_+_105684420 0.05 ENSRNOT00000040543
G patch domain containing 2
chr17_-_79085076 0.05 ENSRNOT00000057851
family with sequence similarity 171, member A1
chr1_+_140998240 0.05 ENSRNOT00000023506
ENSRNOT00000090897
abhydrolase domain containing 2
chr2_+_127525285 0.05 ENSRNOT00000093247
inturned planar cell polarity protein
chr12_-_46493203 0.04 ENSRNOT00000057036
citron rho-interacting serine/threonine kinase
chr6_+_64789940 0.04 ENSRNOT00000085979
ENSRNOT00000059739
ENSRNOT00000051908
ENSRNOT00000082793
ENSRNOT00000078583
ENSRNOT00000091677
ENSRNOT00000093241
neuronal cell adhesion molecule
chr10_-_13558377 0.04 ENSRNOT00000084066
ENSRNOT00000081995
TBC1 domain family, member 24
chr2_-_187786700 0.04 ENSRNOT00000092257
ENSRNOT00000092612
ENSRNOT00000068360
solute carrier family 25, member 44
chr1_+_167066516 0.04 ENSRNOT00000000474
nuclear mitotic apparatus protein 1
chr5_+_135574172 0.04 ENSRNOT00000023416
testis-specific kinase 2
chr1_+_190666149 0.04 ENSRNOT00000089361
uncharacterized LOC102547219
chr3_-_72052990 0.04 ENSRNOT00000064009
ENSRNOT00000081400
catenin delta 1
chr6_-_3355339 0.04 ENSRNOT00000084602
mitogen-activated protein kinase kinase kinase kinase 3
chr1_+_188420461 0.03 ENSRNOT00000037870
centriolar coiled-coil protein 110
chr4_+_169161585 0.03 ENSRNOT00000079785
epithelial membrane protein 1
chr15_-_93765498 0.03 ENSRNOT00000093297
MYC binding protein 2, E3 ubiquitin protein ligase
chr12_+_49665282 0.03 ENSRNOT00000086397
G protein-coupled receptor kinase 3
chr3_-_145810834 0.03 ENSRNOT00000075429
zinc finger protein 120-like
chr16_+_84465656 0.03 ENSRNOT00000043188
LRRGT00175
chrX_+_144994139 0.03 ENSRNOT00000071783
pre-mRNA-splicing factor CWC22 homolog
chr1_+_217345545 0.03 ENSRNOT00000071741
SH3 and multiple ankyrin repeat domains 2
chr6_-_4520604 0.03 ENSRNOT00000042230
ENSRNOT00000043870
ENSRNOT00000070918
ENSRNOT00000046246
ENSRNOT00000052367
ENSRNOT00000042251
solute carrier family 8 member A1
chr16_-_10802512 0.03 ENSRNOT00000079554
bone morphogenetic protein receptor type 1A
chr14_+_6221085 0.03 ENSRNOT00000068215

chr13_-_83457888 0.03 ENSRNOT00000076289
ENSRNOT00000004065
SFT2 domain containing 2
chr9_-_100253609 0.03 ENSRNOT00000036061
kinesin family member 1A
chr2_-_35870578 0.03 ENSRNOT00000066069
ring finger protein 180
chr8_-_69508024 0.03 ENSRNOT00000083564

chr3_+_48106099 0.03 ENSRNOT00000007218
solute carrier family 4 member 10
chr7_-_72328128 0.03 ENSRNOT00000008227
TSPY-like 5
chr15_-_55209342 0.02 ENSRNOT00000021752
RB transcriptional corepressor 1
chr1_-_128287151 0.02 ENSRNOT00000084946
ENSRNOT00000089723
myocyte enhancer factor 2a
chr8_+_33239139 0.02 ENSRNOT00000011589
Rho GTPase activating protein 32
chr8_-_126390801 0.02 ENSRNOT00000089732

chr15_+_37790141 0.02 ENSRNOT00000076392
ENSRNOT00000091953
interleukin 17D
chr14_-_104960141 0.02 ENSRNOT00000056944
aftiphilin
chr17_-_89923423 0.02 ENSRNOT00000076964
acyl-CoA binding domain containing 5
chr10_-_87286387 0.02 ENSRNOT00000044206
keratin 28
chr13_+_109505697 0.02 ENSRNOT00000005084
angel homolog 2
chr7_-_114590119 0.02 ENSRNOT00000079599
protein tyrosine kinase 2
chr8_+_32188617 0.02 ENSRNOT00000081145
zinc finger and BTB domain containing 44
chr17_+_9596957 0.02 ENSRNOT00000017349
family with sequence similarity 193, member B
chr1_-_241046249 0.02 ENSRNOT00000067796
ENSRNOT00000081866
structural maintenance of chromosomes 5
chr12_+_25430464 0.02 ENSRNOT00000002020
general transcription factor II I
chr13_+_91054974 0.02 ENSRNOT00000091089
C-reactive protein
chr14_-_82171480 0.02 ENSRNOT00000021952
nuclear receptor binding SET domain protein 2
chr1_-_87825333 0.02 ENSRNOT00000072689
zinc finger protein 74
chr1_-_90149991 0.02 ENSRNOT00000076987
similar to RIKEN cDNA 4931406P16
chr8_+_82038967 0.02 ENSRNOT00000079535
myosin VA
chrX_+_124321551 0.02 ENSRNOT00000074486
transcriptional regulator Kaiso-like
chr4_-_81241152 0.02 ENSRNOT00000015325
ENSRNOT00000015152
heterogeneous nuclear ribonucleoprotein A2/B1
chr5_+_25725683 0.02 ENSRNOT00000087602
similar to swan
chr5_-_16799776 0.02 ENSRNOT00000011721
PLAG1 zinc finger
chr7_+_42304534 0.02 ENSRNOT00000085097
KIT ligand
chr13_+_57243877 0.02 ENSRNOT00000083693
potassium sodium-activated channel subfamily T member 2
chr11_-_82893845 0.02 ENSRNOT00000075306
eukaryotic translation initiation factor 4 gamma 1-like
chrX_+_6273733 0.02 ENSRNOT00000074275
NDP, norrin cystine knot growth factor
chr1_-_101819478 0.02 ENSRNOT00000056181
glutamate-rich WD repeat containing 1
chrX_-_1952111 0.02 ENSRNOT00000061140
jade family PHD finger 3
chr7_-_139649286 0.01 ENSRNOT00000080056
SUMO1/sentrin specific peptidase 1
chr2_+_257626383 0.01 ENSRNOT00000080993
zinc finger, ZZ-type containing 3
chr9_+_66888393 0.01 ENSRNOT00000023536
calcium responsive transcription factor
chr14_+_39964588 0.01 ENSRNOT00000003240
gamma-aminobutyric acid type A receptor gamma 1 subunit
chr5_-_22765429 0.01 ENSRNOT00000079432
aspartate-beta-hydroxylase
chr8_-_39460844 0.01 ENSRNOT00000048875
PBX/knotted 1 homeobox 2
chr1_-_66237501 0.01 ENSRNOT00000073006
zinc finger protein 606
chr19_-_43955747 0.01 ENSRNOT00000058891
ENSRNOT00000041815
BCAR1, Cas family scaffolding protein
chr20_+_3155652 0.01 ENSRNOT00000042882
RT1 class Ib, locus S2
chr2_-_198706428 0.01 ENSRNOT00000085006
RNA polymerase III subunit G like
chr5_-_56567320 0.01 ENSRNOT00000066081
TOP1 binding arginine/serine rich protein
chr7_-_140291620 0.01 ENSRNOT00000088323
adenylate cyclase 6
chr2_-_60657712 0.01 ENSRNOT00000040348
retinoic acid induced 14
chr10_-_52290657 0.01 ENSRNOT00000005293
mitogen activated protein kinase kinase 4
chr3_+_8430829 0.01 ENSRNOT00000090440
ENSRNOT00000060969
cerebral endothelial cell adhesion molecule
chr15_+_62406873 0.01 ENSRNOT00000047572
olfactomedin 4
chr5_+_34007920 0.01 ENSRNOT00000009611
alpha tocopherol transfer protein
chr2_+_123597340 0.01 ENSRNOT00000058552
similar to RIKEN cDNA D630029K19
chr14_-_7824209 0.01 ENSRNOT00000087081
protein tyrosine phosphatase, non-receptor type 13
chr1_+_105285419 0.01 ENSRNOT00000089693
solute carrier family 6 member 5
chr2_+_220298245 0.01 ENSRNOT00000022625
phospholipid phosphatase related 4
chr11_+_31539016 0.01 ENSRNOT00000072856
interferon alpha and beta receptor subunit 2
chr9_+_71247781 0.01 ENSRNOT00000049654
cAMP responsive element binding protein 1
chr1_+_101599018 0.01 ENSRNOT00000028494
fucosyltransferase 1
chr3_-_15278645 0.01 ENSRNOT00000032204
tubulin tyrosine ligase like11
chr6_-_3254779 0.01 ENSRNOT00000061975
cyclin-dependent kinase-like 4
chr4_+_32541706 0.01 ENSRNOT00000050827
succinate dehydrogenase complex assembly factor 3
chr8_+_73682887 0.01 ENSRNOT00000057522
vacuolar protein sorting 13C
chr16_-_20562399 0.01 ENSRNOT00000031692
leucine rich repeat containing 25
chr2_-_149444548 0.01 ENSRNOT00000018600
purinergic receptor P2Y12
chr16_+_6048004 0.01 ENSRNOT00000020750
ARP8 actin-related protein 8 homolog
chr2_-_117454769 0.01 ENSRNOT00000068381
MDS1 and EVI1 complex locus
chr1_-_107373807 0.01 ENSRNOT00000056024
small VCP interacting protein
chr1_-_266428239 0.01 ENSRNOT00000027160
cytochrome P450, family 17, subfamily a, polypeptide 1
chrX_+_9956370 0.01 ENSRNOT00000082316
peripheral plasma membrane protein CASK-like
chr8_-_118436894 0.01 ENSRNOT00000073395
ATR-interacting protein-like
chr2_+_248398917 0.01 ENSRNOT00000045855
guanylate binding protein 1
chr3_+_129885826 0.01 ENSRNOT00000009743
SLX4 interacting protein
chr9_+_50966766 0.01 ENSRNOT00000076636
ERCC excision repair 5, endonuclease
chr10_+_67810810 0.01 ENSRNOT00000079156
proteasome 26S subunit, non-ATPase 11
chr12_-_23727535 0.01 ENSRNOT00000085911
ENSRNOT00000001950
deltex E3 ubiquitin ligase 2
chr5_+_28485619 0.01 ENSRNOT00000093341
ENSRNOT00000093129
uncharacterized LOC100912373
chr4_-_168656673 0.01 ENSRNOT00000009341
G protein-coupled receptor 19
chr10_-_16752205 0.01 ENSRNOT00000079462
CREB3 regulatory factor
chr13_+_56546021 0.01 ENSRNOT00000016797
abnormal spindle microtubule assembly
chr1_+_1545134 0.01 ENSRNOT00000044523

chr19_-_19727081 0.01 ENSRNOT00000020700
adenylate cyclase 7
chr5_+_25253010 0.01 ENSRNOT00000061333
RNA binding motif protein 12B
chr5_+_58995249 0.00 ENSRNOT00000023411
coiled-coil domain containing 107
chr16_+_71738718 0.00 ENSRNOT00000022097
pleckstrin homology domain containing A2
chr3_-_66394764 0.00 ENSRNOT00000075832
ceramide kinase-like
chr2_+_220432037 0.00 ENSRNOT00000021988
ferric-chelate reductase 1
chr8_-_49308806 0.00 ENSRNOT00000047291
CD3e molecule
chr13_-_90405591 0.00 ENSRNOT00000006849
VANGL planar cell polarity protein 2
chr10_+_29033989 0.00 ENSRNOT00000088322
SLU7 homolog, splicing factor
chr2_+_86996497 0.00 ENSRNOT00000042058
zinc finger protein 455
chr18_-_16543992 0.00 ENSRNOT00000036306
solute carrier family 39 member 6
chrX_+_84064427 0.00 ENSRNOT00000046364
zinc finger protein 711
chr3_+_17889972 0.00 ENSRNOT00000073021

chr14_-_81053905 0.00 ENSRNOT00000045068
ENSRNOT00000040215
regulator of G-protein signaling 12
chr4_+_68635581 0.00 ENSRNOT00000016217
single stranded DNA binding protein 1
chr13_+_113373578 0.00 ENSRNOT00000009900
plexin A2
chr1_-_228014924 0.00 ENSRNOT00000042091
oocyte secreted protein 2
chr3_-_57607683 0.00 ENSRNOT00000093222
ENSRNOT00000058524
methyltransferase like 8
chr1_+_68436917 0.00 ENSRNOT00000088586
leucyl-cystinyl aminopeptidase
chr14_-_33444235 0.00 ENSRNOT00000044441
ADP-ribosylation factor like GTPase 9
chr3_+_55910177 0.00 ENSRNOT00000009969
kelch-like family member 41
chr15_-_80713153 0.00 ENSRNOT00000063800
kelch-like family member 1
chr16_+_24978527 0.00 ENSRNOT00000019363
translation machinery associated 16 homolog
chr7_+_44009069 0.00 ENSRNOT00000005523
MGAT4 family, member C
chr4_+_117962319 0.00 ENSRNOT00000057441
transforming growth factor alpha
chr1_+_68436593 0.00 ENSRNOT00000080325
leucyl-cystinyl aminopeptidase

Network of associatons between targets according to the STRING database.

First level regulatory network of Nkx6-3_Dbx2_Barx2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:1901748 leukotriene D4 metabolic process(GO:1901748) leukotriene D4 biosynthetic process(GO:1901750)
0.0 0.1 GO:0036324 vascular endothelial growth factor receptor-2 signaling pathway(GO:0036324)
0.0 0.1 GO:0061092 regulation of phospholipid translocation(GO:0061091) positive regulation of phospholipid translocation(GO:0061092)
0.0 0.1 GO:0014886 transition between slow and fast fiber(GO:0014886)
0.0 0.1 GO:0071557 histone H3-K27 demethylation(GO:0071557)
0.0 0.1 GO:0021828 cerebral cortex tangential migration using cell-axon interactions(GO:0021824) gonadotrophin-releasing hormone neuronal migration to the hypothalamus(GO:0021828) hypothalamic tangential migration using cell-axon interactions(GO:0021856) hypothalamus gonadotrophin-releasing hormone neuron differentiation(GO:0021886) hypothalamus gonadotrophin-releasing hormone neuron development(GO:0021888) facioacoustic ganglion development(GO:1903375)
0.0 0.0 GO:0032053 ciliary basal body organization(GO:0032053)
0.0 0.0 GO:0043474 eye pigment metabolic process(GO:0042441) pigment metabolic process involved in developmental pigmentation(GO:0043324) pigment metabolic process involved in pigmentation(GO:0043474) rhodopsin metabolic process(GO:0046154)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:1990032 parallel fiber(GO:1990032)
0.0 0.2 GO:0097442 CA3 pyramidal cell dendrite(GO:0097442)
0.0 0.0 GO:0061673 mitotic spindle astral microtubule(GO:0061673)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0071558 histone demethylase activity (H3-K27 specific)(GO:0071558)
0.0 0.1 GO:0035662 Toll-like receptor 4 binding(GO:0035662)
0.0 0.1 GO:0015467 G-protein activated inward rectifier potassium channel activity(GO:0015467)
0.0 0.1 GO:0036374 gamma-glutamyltransferase activity(GO:0003840) glutathione hydrolase activity(GO:0036374)