GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Rfx1 | rn6_v1_chr19_+_25181564_25181564 | -0.25 | 6.9e-01 | Click! |
Rfx4 | rn6_v1_chr7_+_25808419_25808419 | -0.23 | 7.1e-01 | Click! |
Rfx3 | rn6_v1_chr1_-_246010594_246010594 | -0.17 | 7.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr20_-_14573519 Show fit | 0.94 |
ENSRNOT00000001772
|
RAB36, member RAS oncogene family |
|
chr6_+_8886591 Show fit | 0.92 |
ENSRNOT00000091510
ENSRNOT00000089174 |
SIX homeobox 3 |
|
chr11_+_88424414 Show fit | 0.91 |
ENSRNOT00000022328
|
sperm associated antigen 6-like |
|
chr17_-_88095729 Show fit | 0.90 |
ENSRNOT00000025140
|
enkurin, TRPC channel interacting protein |
|
chr2_+_164549455 Show fit | 0.78 |
ENSRNOT00000017151
|
myeloid leukemia factor 1 |
|
chr2_-_195712461 Show fit | 0.78 |
ENSRNOT00000056449
|
regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 |
|
chr12_+_22665112 Show fit | 0.78 |
ENSRNOT00000001918
|
adaptor-related protein complex 1, sigma 1 subunit |
|
chr10_+_96663740 Show fit | 0.76 |
ENSRNOT00000037067
|
centrosomal protein 112 |
|
chr2_-_208623314 Show fit | 0.75 |
ENSRNOT00000022731
|
primary cilia formation |
|
chr7_-_18577325 Show fit | 0.74 |
ENSRNOT00000084308
ENSRNOT00000090849 |
membrane associated ring-CH-type finger 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0007288 | sperm axoneme assembly(GO:0007288) |
0.3 | 0.9 | GO:0014016 | neuroblast differentiation(GO:0014016) |
0.1 | 0.9 | GO:0035721 | intraciliary retrograde transport(GO:0035721) |
0.0 | 0.8 | GO:0097120 | receptor localization to synapse(GO:0097120) |
0.0 | 0.8 | GO:0071218 | cellular response to misfolded protein(GO:0071218) |
0.1 | 0.7 | GO:2000786 | positive regulation of autophagosome assembly(GO:2000786) |
0.2 | 0.5 | GO:0070638 | nicotinamide riboside catabolic process(GO:0006738) urate biosynthetic process(GO:0034418) nicotinamide riboside metabolic process(GO:0046495) pyridine nucleoside metabolic process(GO:0070637) pyridine nucleoside catabolic process(GO:0070638) |
0.1 | 0.5 | GO:0061588 | calcium activated phospholipid scrambling(GO:0061588) calcium activated phosphatidylcholine scrambling(GO:0061590) calcium activated galactosylceramide scrambling(GO:0061591) |
0.1 | 0.5 | GO:0061002 | negative regulation of dendritic spine morphogenesis(GO:0061002) |
0.1 | 0.5 | GO:0002318 | myeloid progenitor cell differentiation(GO:0002318) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.0 | GO:0030286 | dynein complex(GO:0030286) |
0.0 | 1.1 | GO:0060077 | inhibitory synapse(GO:0060077) |
0.2 | 0.9 | GO:1990716 | axonemal central apparatus(GO:1990716) |
0.0 | 0.9 | GO:0097228 | sperm principal piece(GO:0097228) |
0.0 | 0.7 | GO:0010369 | chromocenter(GO:0010369) |
0.0 | 0.7 | GO:0035869 | ciliary transition zone(GO:0035869) |
0.0 | 0.6 | GO:0001741 | XY body(GO:0001741) |
0.0 | 0.5 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.1 | 0.4 | GO:0016939 | kinesin II complex(GO:0016939) |
0.0 | 0.4 | GO:0044292 | dendrite terminus(GO:0044292) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | GO:0001222 | transcription corepressor binding(GO:0001222) |
0.0 | 0.9 | GO:0043015 | gamma-tubulin binding(GO:0043015) |
0.0 | 0.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.0 | 0.8 | GO:0070491 | repressing transcription factor binding(GO:0070491) |
0.1 | 0.7 | GO:0045505 | dynein intermediate chain binding(GO:0045505) |
0.1 | 0.6 | GO:0045504 | dynein heavy chain binding(GO:0045504) |
0.0 | 0.6 | GO:0046875 | ephrin receptor binding(GO:0046875) |
0.2 | 0.5 | GO:0004731 | purine nucleobase binding(GO:0002060) purine-nucleoside phosphorylase activity(GO:0004731) |
0.0 | 0.5 | GO:0005229 | intracellular calcium activated chloride channel activity(GO:0005229) |
0.1 | 0.4 | GO:0008474 | palmitoyl-(protein) hydrolase activity(GO:0008474) palmitoyl hydrolase activity(GO:0098599) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.9 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.5 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.5 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 0.4 | PID IGF1 PATHWAY | IGF1 pathway |
0.0 | 0.0 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.8 | REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION | Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression |
0.0 | 0.6 | REACTOME ACTIVATION OF BH3 ONLY PROTEINS | Genes involved in Activation of BH3-only proteins |
0.1 | 0.5 | REACTOME PURINE CATABOLISM | Genes involved in Purine catabolism |
0.0 | 0.5 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.0 | 0.5 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 0.4 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.0 | 0.3 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
0.0 | 0.3 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.0 | 0.2 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 0.2 | REACTOME ACTIVATION OF RAC | Genes involved in Activation of Rac |