GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Zfhx3 Links NCBI RGD Ensembl	ENSRNOG00000014452	zinc finger homeobox 3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Zfhx3	rn6_v1_chr19_-_42920344_42920344	-0.71	1.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_90818736 Show fit	0.18	ENSRNOT00000093480 ENSRNOT00000009083	Kdm4c Links NCBI RGD Ensembl Show fit	lysine demethylase 4C
chr1_-_48891130 Show fit	0.16	ENSRNOT00000083884	AC135026.1 Links NCBI RGD Ensembl Show fit
chr2_+_149899836 Show fit	0.15	ENSRNOT00000086481	RGD1560324 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein C130079G13
chr8_-_128754514 Show fit	0.14	ENSRNOT00000025019	Cx3cr1 Links NCBI RGD Ensembl Show fit	C-X3-C motif chemokine receptor 1
chr6_-_98666007 Show fit	0.10	ENSRNOT00000082695	AABR07064867.1 Links NCBI RGD Ensembl Show fit
chr15_-_93765498 Show fit	0.10	ENSRNOT00000093297	Mycbp2 Links NCBI RGD Ensembl Show fit	MYC binding protein 2, E3 ubiquitin protein ligase
chr6_-_50941248 Show fit	0.09	ENSRNOT00000084533	Dus4l Links NCBI RGD Ensembl Show fit	dihydrouridine synthase 4-like
chrM_+_9870 Show fit	0.09	ENSRNOT00000044582	Mt-nd4l Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH 4L dehydrogenase
chr5_+_6373583 Show fit	0.09	ENSRNOT00000084749	AABR07046778.1 Links NCBI RGD Ensembl Show fit
chr3_-_55951584 Show fit	0.08	ENSRNOT00000036585	Fastkd1 Links NCBI RGD Ensembl Show fit	FAST kinase domains 1
chr9_+_73378057 Show fit	0.07	ENSRNOT00000043627 ENSRNOT00000045766 ENSRNOT00000092445 ENSRNOT00000037974	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr10_-_91661558 Show fit	0.07	ENSRNOT00000043156	AABR07030521.1 Links NCBI RGD Ensembl Show fit
chr2_-_177924970 Show fit	0.07	ENSRNOT00000029340	Rapgef2 Links NCBI RGD Ensembl Show fit	Rap guanine nucleotide exchange factor 2
chr1_-_166912524 Show fit	0.07	ENSRNOT00000092952	Inppl1 Links NCBI RGD Ensembl Show fit	inositol polyphosphate phosphatase-like 1
chr7_+_132378273 Show fit	0.06	ENSRNOT00000010990	LOC690142 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC690142
chr12_-_29743705 Show fit	0.06	ENSRNOT00000001185	Caln1 Links NCBI RGD Ensembl Show fit	calneuron 1
chr14_+_69800156 Show fit	0.05	ENSRNOT00000072746	Lcorl Links NCBI RGD Ensembl Show fit	ligand dependent nuclear receptor corepressor-like
chr16_-_10802512 Show fit	0.05	ENSRNOT00000079554	Bmpr1a Links NCBI RGD Ensembl Show fit	bone morphogenetic protein receptor type 1A
chr2_+_113984646 Show fit	0.05	ENSRNOT00000016799	Tnik Links NCBI RGD Ensembl Show fit	TRAF2 and NCK interacting kinase
chr8_+_33239139 Show fit	0.05	ENSRNOT00000011589	Arhgap32 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 32
chr18_-_28017925 Show fit	0.05	ENSRNOT00000075420	Lrrtm2 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 2
chr3_+_63379031 Show fit	0.05	ENSRNOT00000068199	Osbpl6 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 6
chr19_-_38484611 Show fit	0.05	ENSRNOT00000077960	Nfat5 Links NCBI RGD Ensembl Show fit	nuclear factor of activated T-cells 5
chr4_-_66955732 Show fit	0.05	ENSRNOT00000084282	Kdm7a Links NCBI RGD Ensembl Show fit	lysine (K)-specific demethylase 7A
chr1_-_197568165 Show fit	0.05	ENSRNOT00000079044	Xpo6 Links NCBI RGD Ensembl Show fit	exportin 6
chr13_-_86671515 Show fit	0.05	ENSRNOT00000082869	AABR07021704.1 Links NCBI RGD Ensembl Show fit
chr5_-_48165317 Show fit	0.04	ENSRNOT00000088179	Ankrd6 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 6
chr14_+_32257805 Show fit	0.04	ENSRNOT00000039626	AABR07014804.1 Links NCBI RGD Ensembl Show fit
chr7_+_107406962 Show fit	0.04	ENSRNOT00000093254	Phf20l1 Links NCBI RGD Ensembl Show fit	PHD finger protein 20-like protein 1
chr6_-_71199110 Show fit	0.04	ENSRNOT00000081883	Prkd1 Links NCBI RGD Ensembl Show fit	protein kinase D1
chr9_+_73418607 Show fit	0.04	ENSRNOT00000092547	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr1_-_164977633 Show fit	0.04	ENSRNOT00000029629	Rnf169 Links NCBI RGD Ensembl Show fit	ring finger protein 169
chr1_-_128287151 Show fit	0.04	ENSRNOT00000084946 ENSRNOT00000089723	Mef2a Links NCBI RGD Ensembl Show fit	myocyte enhancer factor 2a
chr1_-_126211439 Show fit	0.03	ENSRNOT00000014988	Tjp1 Links NCBI RGD Ensembl Show fit	tight junction protein 1
chr19_-_39267928 Show fit	0.03	ENSRNOT00000027686	Tmed6 Links NCBI RGD Ensembl Show fit	transmembrane p24 trafficking protein 6
chr17_-_76188979 Show fit	0.03	ENSRNOT00000092442	Upf2 Links NCBI RGD Ensembl Show fit	UPF2 regulator of nonsense transcripts homolog (yeast)
chr2_+_123597340 Show fit	0.03	ENSRNOT00000058552	RGD1307100 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA D630029K19
chr5_+_116420690 Show fit	0.03	ENSRNOT00000087089	Nfia Links NCBI RGD Ensembl Show fit	nuclear factor I/A
chr13_+_98231326 Show fit	0.03	ENSRNOT00000003837	Cdc42bpa Links NCBI RGD Ensembl Show fit	CDC42 binding protein kinase alpha
chr16_+_39827749 Show fit	0.03	ENSRNOT00000074885	Wdr17 Links NCBI RGD Ensembl Show fit	WD repeat domain 17
chr17_-_15467320 Show fit	0.03	ENSRNOT00000072490 ENSRNOT00000093561	Ogn Links NCBI RGD Ensembl Show fit	osteoglycin
chr19_-_11669578 Show fit	0.03	ENSRNOT00000026373	Gnao1 Links NCBI RGD Ensembl Show fit	G protein subunit alpha o1
chr1_-_101819478 Show fit	0.03	ENSRNOT00000056181	Grwd1 Links NCBI RGD Ensembl Show fit	glutamate-rich WD repeat containing 1
chr6_+_48452369 Show fit	0.03	ENSRNOT00000044310	Myt1l Links NCBI RGD Ensembl Show fit	myelin transcription factor 1-like
chr8_+_82043403 Show fit	0.03	ENSRNOT00000091789	Myo5a Links NCBI RGD Ensembl Show fit	myosin VA
chr2_+_55747318 Show fit	0.03	ENSRNOT00000050655	Dab2 Links NCBI RGD Ensembl Show fit	DAB2, clathrin adaptor protein
chr11_-_4397361 Show fit	0.03	ENSRNOT00000046370	Cadm2 Links NCBI RGD Ensembl Show fit	cell adhesion molecule 2
chr7_-_140291620 Show fit	0.02	ENSRNOT00000088323	Adcy6 Links NCBI RGD Ensembl Show fit	adenylate cyclase 6
chr17_-_76281660 Show fit	0.02	ENSRNOT00000058070	Upf2 Links NCBI RGD Ensembl Show fit	UPF2 regulator of nonsense transcripts homolog (yeast)
chr9_+_77320726 Show fit	0.02	ENSRNOT00000068450	Spag16 Links NCBI RGD Ensembl Show fit	sperm associated antigen 16
chr5_+_156439633 Show fit	0.02	ENSRNOT00000090232	Eif4g3 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4 gamma, 3
chr13_-_88436789 Show fit	0.02	ENSRNOT00000003901	Ddr2 Links NCBI RGD Ensembl Show fit	discoidin domain receptor tyrosine kinase 2
chr3_+_104816987 Show fit	0.02	ENSRNOT00000042103 ENSRNOT00000044625	Fmn1 Links NCBI RGD Ensembl Show fit	formin 1
chr11_-_83300409 Show fit	0.02	ENSRNOT00000029255	Vps8 Links NCBI RGD Ensembl Show fit	VPS8 CORVET complex subunit
chr7_-_15163866 Show fit	0.02	ENSRNOT00000042638	Zfp870 Links NCBI RGD Ensembl Show fit	zinc finger protein 870
chr2_-_88763733 Show fit	0.02	ENSRNOT00000059424	LOC688389 Links NCBI RGD Ensembl Show fit	similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
chr4_+_161720501 Show fit	0.02	ENSRNOT00000008196 ENSRNOT00000055886	Nrip2 Links NCBI RGD Ensembl Show fit	nuclear receptor interacting protein 2
chr1_+_88955440 Show fit	0.02	ENSRNOT00000091101	Prodh2 Links NCBI RGD Ensembl Show fit	proline dehydrogenase 2
chr1_+_170205591 Show fit	0.02	ENSRNOT00000071063	LOC686660 Links NCBI RGD Ensembl Show fit	similar to olfactory receptor 692
chr2_+_209661244 Show fit	0.02	ENSRNOT00000091973	AABR07012826.1 Links NCBI RGD Ensembl Show fit
chrM_+_2740 Show fit	0.02	ENSRNOT00000047550	Mt-nd1 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 1
chr5_+_36566783 Show fit	0.02	ENSRNOT00000077650	Fbxl4 Links NCBI RGD Ensembl Show fit	F-box and leucine-rich repeat protein 4
chr11_-_72814850 Show fit	0.01	ENSRNOT00000091575	LOC100911374 Links NCBI RGD Ensembl Show fit	UBX domain-containing protein 7-like
chr1_-_266428239 Show fit	0.01	ENSRNOT00000027160	Cyp17a1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 17, subfamily a, polypeptide 1
chr10_+_89285855 Show fit	0.01	ENSRNOT00000028033	G6pc Links NCBI RGD Ensembl Show fit	glucose-6-phosphatase, catalytic subunit
chr16_-_48692476 Show fit	0.01	ENSRNOT00000013118	Irf2 Links NCBI RGD Ensembl Show fit	interferon regulatory factor 2
chr1_-_205030567 Show fit	0.01	ENSRNOT00000023404	Ctbp2 Links NCBI RGD Ensembl Show fit	C-terminal binding protein 2
chr1_+_261291870 Show fit	0.01	ENSRNOT00000049914	Hoga1 Links NCBI RGD Ensembl Show fit	4-hydroxy-2-oxoglutarate aldolase 1
chr2_-_27287605 Show fit	0.01	ENSRNOT00000034041	Ankdd1b Links NCBI RGD Ensembl Show fit	ankyrin repeat and death domain containing 1B
chr20_-_3605638 Show fit	0.01	ENSRNOT00000074460	Sfta2 Links NCBI RGD Ensembl Show fit	surfactant associated 2
chr2_-_157759819 Show fit	0.01	ENSRNOT00000015763 ENSRNOT00000016016	LOC100909712 Links NCBI RGD Ensembl Show fit	cyclin-L1-like
chrM_+_9451 Show fit	0.01	ENSRNOT00000041241	Mt-nd3 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 3
chrM_+_14136 Show fit	0.01	ENSRNOT00000042098	Mt-cyb Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome b
chr9_+_53013413 Show fit	0.01	ENSRNOT00000005313	Ankar Links NCBI RGD Ensembl Show fit	ankyrin and armadillo repeat containing
chr16_+_8211420 Show fit	0.01	ENSRNOT00000079609	Oxnad1 Links NCBI RGD Ensembl Show fit	oxidoreductase NAD-binding domain containing 1
chr7_-_12601674 Show fit	0.01	ENSRNOT00000093489	Arid3a Links NCBI RGD Ensembl Show fit	AT-rich interaction domain 3A
chr12_+_21981755 Show fit	0.01	ENSRNOT00000001871	LOC100910540 Links NCBI RGD Ensembl Show fit	7SK snRNA methylphosphate capping enzyme-like
chr13_-_74331214 Show fit	0.01	ENSRNOT00000006018	Fam20b Links NCBI RGD Ensembl Show fit	FAM20B, glycosaminoglycan xylosylkinase
chr2_-_88660449 Show fit	0.01	ENSRNOT00000051741	Slc7a12 Links NCBI RGD Ensembl Show fit	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
chr2_-_184263564 Show fit	0.01	ENSRNOT00000015279	Fbxw7 Links NCBI RGD Ensembl Show fit	F-box and WD repeat domain containing 7
chr2_+_235264219 Show fit	0.01	ENSRNOT00000086245	Cfi Links NCBI RGD Ensembl Show fit	complement factor I
chr1_-_99632845 Show fit	0.01	ENSRNOT00000049123	LOC103691107 Links NCBI RGD Ensembl Show fit	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 pseudogene
chr17_-_54714914 Show fit	0.01	ENSRNOT00000024336	Zeb1 Links NCBI RGD Ensembl Show fit	zinc finger E-box binding homeobox 1
chr1_+_88955135 Show fit	0.01	ENSRNOT00000083550	Prodh2 Links NCBI RGD Ensembl Show fit	proline dehydrogenase 2
chr11_+_65743892 Show fit	0.00	ENSRNOT00000085226	AC106292.2 Links NCBI RGD Ensembl Show fit
chr14_-_42560174 Show fit	0.00	ENSRNOT00000003128	Tmem33 Links NCBI RGD Ensembl Show fit	transmembrane protein 33
chr5_-_128730446 Show fit	0.00	ENSRNOT00000089441	Osbpl9 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 9
chr8_-_126390801 Show fit	0.00	ENSRNOT00000089732	AABR07071661.1 Links NCBI RGD Ensembl Show fit
chr20_-_4132604 Show fit	0.00	ENSRNOT00000077630 ENSRNOT00000048332	RT1-Da Links NCBI RGD Ensembl Show fit	RT1 class II, locus Da
chr17_-_78499881 Show fit	0.00	ENSRNOT00000079260	Fam107b Links NCBI RGD Ensembl Show fit	family with sequence similarity 107, member B
chrX_+_54390733 Show fit	0.00	ENSRNOT00000004977	RGD1565785 Links NCBI RGD Ensembl Show fit	similar to chromosome X open reading frame 21
chr1_+_107262659 Show fit	0.00	ENSRNOT00000022499	Gas2 Links NCBI RGD Ensembl Show fit	growth arrest-specific 2
chr6_-_33738825 Show fit	0.00	ENSRNOT00000039492	Slc7a15 Links NCBI RGD Ensembl Show fit	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002282	microglial cell activation involved in immune response(GO:0002282)
0.0	0.2	GO:1900113	negative regulation of histone H3-K9 trimethylation(GO:1900113)
0.0	0.1	GO:0048382	lateral mesodermal cell fate commitment(GO:0048372) lateral mesodermal cell fate specification(GO:0048377) regulation of lateral mesodermal cell fate specification(GO:0048378) mesendoderm development(GO:0048382) regulation of cardiac ventricle development(GO:1904412)
0.0	0.1	GO:0002943	tRNA dihydrouridine synthesis(GO:0002943)
0.0	0.1	GO:0048022	negative regulation of melanin biosynthetic process(GO:0048022) negative regulation of secondary metabolite biosynthetic process(GO:1900377)
0.0	0.0	GO:0055005	ventricular cardiac myofibril assembly(GO:0055005)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0097442	CA3 pyramidal cell dendrite(GO:0097442)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019960	C-X3-C chemokine binding(GO:0019960)
0.0	0.1	GO:0017150	tRNA dihydrouridine synthase activity(GO:0017150)
0.0	0.0	GO:0071558	histone demethylase activity (H3-K27 specific)(GO:0071558)
0.0	0.1	GO:0031697	beta-1 adrenergic receptor binding(GO:0031697)