GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxd9 Links NCBI RGD Ensembl	ENSRNOG00000001580	homeo box D9

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr13_+_85818427 Show fit	0.10	ENSRNOT00000077227 ENSRNOT00000006117	Rxrg Links NCBI RGD Ensembl Show fit	retinoid X receptor gamma
chr7_-_94774569 Show fit	0.09	ENSRNOT00000036399	Dscc1 Links NCBI RGD Ensembl Show fit	DNA replication and sister chromatid cohesion 1
chr11_+_15081774 Show fit	0.09	ENSRNOT00000009911	LOC108348050 Links NCBI RGD Ensembl Show fit	ubiquitin carboxyl-terminal hydrolase 25-like
chr17_-_51912496 Show fit	0.08	ENSRNOT00000019272	Inhba Links NCBI RGD Ensembl Show fit	inhibin beta A subunit
chr9_+_77320726 Show fit	0.07	ENSRNOT00000068450	Spag16 Links NCBI RGD Ensembl Show fit	sperm associated antigen 16
chr10_-_97582188 Show fit	0.07	ENSRNOT00000005076	Rgs9 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 9
chr1_+_141218095 Show fit	0.07	ENSRNOT00000051411	LOC691427 Links NCBI RGD Ensembl Show fit	similar to 6.8 kDa mitochondrial proteolipid
chr2_-_220838905 Show fit	0.07	ENSRNOT00000078914	AABR07013065.1 Links NCBI RGD Ensembl Show fit
chr18_-_1828606 Show fit	0.07	ENSRNOT00000033312	Esco1 Links NCBI RGD Ensembl Show fit	establishment of sister chromatid cohesion N-acetyltransferase 1
chr8_-_39190457 Show fit	0.07	ENSRNOT00000090161	Stt3a Links NCBI RGD Ensembl Show fit	STT3A, catalytic subunit of the oligosaccharyltransferase complex
chr16_+_39827749 Show fit	0.06	ENSRNOT00000074885	Wdr17 Links NCBI RGD Ensembl Show fit	WD repeat domain 17
chr18_+_81821127 Show fit	0.06	ENSRNOT00000058199	Fbxo15 Links NCBI RGD Ensembl Show fit	F-box protein 15
chr12_-_6078411 Show fit	0.05	ENSRNOT00000001197	Rxfp2 Links NCBI RGD Ensembl Show fit	relaxin/insulin-like family peptide receptor 2
chrX_+_51286737 Show fit	0.05	ENSRNOT00000035692	Dmd Links NCBI RGD Ensembl Show fit	dystrophin
chr9_+_12114977 Show fit	0.05	ENSRNOT00000073673	AABR07066648.1 Links NCBI RGD Ensembl Show fit
chr15_-_9086282 Show fit	0.05	ENSRNOT00000008989	Thrb Links NCBI RGD Ensembl Show fit	thyroid hormone receptor beta
chr2_-_178612470 Show fit	0.05	ENSRNOT00000013499	Tmem144 Links NCBI RGD Ensembl Show fit	transmembrane protein 144
chr2_+_216863428 Show fit	0.05	ENSRNOT00000068413	Col11a1 Links NCBI RGD Ensembl Show fit	collagen type XI alpha 1 chain
chr14_+_17228856 Show fit	0.05	ENSRNOT00000003082	Cxcl9 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine ligand 9
chrX_+_14019961 Show fit	0.05	ENSRNOT00000004785	Sytl5 Links NCBI RGD Ensembl Show fit	synaptotagmin-like 5
chrM_+_3904 Show fit	0.05	ENSRNOT00000040993	Mt-nd2 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 2
chr16_-_3762877 Show fit	0.05	ENSRNOT00000052224	Duxbl1 Links NCBI RGD Ensembl Show fit	double homeobox B-like 1
chr15_-_37056892 Show fit	0.04	ENSRNOT00000047731	Zmym5 Links NCBI RGD Ensembl Show fit	zinc finger MYM-type containing 5
chr13_+_26903052 Show fit	0.04	ENSRNOT00000003625	Serpinb5 Links NCBI RGD Ensembl Show fit	serpin family B member 5
chr9_-_30844199 Show fit	0.04	ENSRNOT00000017169	Col19a1 Links NCBI RGD Ensembl Show fit	collagen type XIX alpha 1 chain
chr10_-_91661558 Show fit	0.04	ENSRNOT00000043156	AABR07030521.1 Links NCBI RGD Ensembl Show fit
chr11_-_43022565 Show fit	0.04	ENSRNOT00000002285	Riox2 Links NCBI RGD Ensembl Show fit	ribosomal oxygenase 2
chr17_+_53965562 Show fit	0.04	ENSRNOT00000090387	Ggps1 Links NCBI RGD Ensembl Show fit	geranylgeranyl diphosphate synthase 1
chr2_+_197715761 Show fit	0.04	ENSRNOT00000083069	Golph3l Links NCBI RGD Ensembl Show fit	golgi phosphoprotein 3-like
chr3_+_28627084 Show fit	0.04	ENSRNOT00000049884	Arhgap15 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 15
chr14_+_12218553 Show fit	0.04	ENSRNOT00000003237	Prkg2 Links NCBI RGD Ensembl Show fit	protein kinase, cGMP-dependent, type II
chr4_-_29778039 Show fit	0.04	ENSRNOT00000074177	Sgce Links NCBI RGD Ensembl Show fit	sarcoglycan, epsilon
chr2_-_149333597 Show fit	0.04	ENSRNOT00000066948	P2ry14 Links NCBI RGD Ensembl Show fit	purinergic receptor P2Y14
chr10_-_88019967 Show fit	0.04	ENSRNOT00000047580	Krt36 Links NCBI RGD Ensembl Show fit	keratin 36
chr17_+_87020089 Show fit	0.04	ENSRNOT00000043523	Rpl37-ps1 Links NCBI RGD Ensembl Show fit	ribosomal protein L37, pseudogene 1
chr11_-_81444375 Show fit	0.04	ENSRNOT00000058479 ENSRNOT00000078131 ENSRNOT00000080949 ENSRNOT00000080562 ENSRNOT00000084867	Kng1 Links NCBI RGD Ensembl Show fit	kininogen 1
chr9_-_92616165 Show fit	0.03	ENSRNOT00000056995	Sp110 Links NCBI RGD Ensembl Show fit	SP110 nuclear body protein
chr9_+_95295701 Show fit	0.03	ENSRNOT00000025045	Ugt1a5 Links NCBI RGD Ensembl Show fit	UDP glucuronosyltransferase family 1 member A5
chr13_-_56462834 Show fit	0.03	ENSRNOT00000032122	Crb1 Links NCBI RGD Ensembl Show fit	crumbs 1, cell polarity complex component
chr8_+_5606592 Show fit	0.03	ENSRNOT00000011727	Mmp12 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 12
chr18_+_65285318 Show fit	0.03	ENSRNOT00000020431	Tcf4 Links NCBI RGD Ensembl Show fit	transcription factor 4
chr2_+_54466280 Show fit	0.03	ENSRNOT00000033112	C6 Links NCBI RGD Ensembl Show fit	complement C6
chr4_+_33890349 Show fit	0.03	ENSRNOT00000078680	C1galt1 Links NCBI RGD Ensembl Show fit	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
chrX_-_158288109 Show fit	0.03	ENSRNOT00000072527	LOC103690175 Links NCBI RGD Ensembl Show fit	PHD finger protein 6
chrX_-_115073890 Show fit	0.03	ENSRNOT00000006638	Capn6 Links NCBI RGD Ensembl Show fit	calpain 6
chr2_+_22910236 Show fit	0.03	ENSRNOT00000078266	Homer1 Links NCBI RGD Ensembl Show fit	homer scaffolding protein 1
chr3_-_21904133 Show fit	0.03	ENSRNOT00000090576 ENSRNOT00000087611 ENSRNOT00000066377	Strbp Links NCBI RGD Ensembl Show fit	spermatid perinuclear RNA binding protein
chr2_-_252451999 Show fit	0.03	ENSRNOT00000021861	Dnase2b Links NCBI RGD Ensembl Show fit	deoxyribonuclease 2 beta
chr11_+_53140599 Show fit	0.03	ENSRNOT00000083438	Bbx Links NCBI RGD Ensembl Show fit	BBX, HMG-box containing
chr9_+_111233147 Show fit	0.03	ENSRNOT00000056439	Ppip5k2 Links NCBI RGD Ensembl Show fit	diphosphoinositol pentakisphosphate kinase 2
chr2_-_30458542 Show fit	0.03	ENSRNOT00000072926	Naip6 Links NCBI RGD Ensembl Show fit	NLR family, apoptosis inhibitory protein 6
chr1_+_21613148 Show fit	0.03	ENSRNOT00000018695	Enpp3 Links NCBI RGD Ensembl Show fit	ectonucleotide pyrophosphatase/phosphodiesterase 3
chr13_-_45040593 Show fit	0.03	ENSRNOT00000004908	Lct Links NCBI RGD Ensembl Show fit	lactase
chr1_-_22404002 Show fit	0.03	ENSRNOT00000044098	Taar8a Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8a
chr5_+_104698040 Show fit	0.03	ENSRNOT00000009127	Adamtsl1 Links NCBI RGD Ensembl Show fit	ADAMTS-like 1
chr13_-_32427177 Show fit	0.03	ENSRNOT00000044628	Cdh19 Links NCBI RGD Ensembl Show fit	cadherin 19
chr16_-_32421005 Show fit	0.03	ENSRNOT00000082712	Nek1 Links NCBI RGD Ensembl Show fit	NIMA-related kinase 1
chr4_-_28437676 Show fit	0.03	ENSRNOT00000012995	Hepacam2 Links NCBI RGD Ensembl Show fit	HEPACAM family member 2
chr6_+_97110158 Show fit	0.02	ENSRNOT00000088430	Syt16 Links NCBI RGD Ensembl Show fit	synaptotagmin 16
chr3_-_72895740 Show fit	0.02	ENSRNOT00000012568	Fads2l1 Links NCBI RGD Ensembl Show fit	fatty acid desaturase 2-like 1
chr1_+_22332090 Show fit	0.02	ENSRNOT00000091252	AABR07000663.1 Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8c (Taar8c), mRNA
chr5_-_147784311 Show fit	0.02	ENSRNOT00000074172	Fam167b Links NCBI RGD Ensembl Show fit	family with sequence similarity 167, member B
chr1_+_22364551 Show fit	0.02	ENSRNOT00000043157	LOC108348200 Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8a
chr12_+_46042413 Show fit	0.02	ENSRNOT00000046882	Ccdc60 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 60
chr3_-_24601063 Show fit	0.02	ENSRNOT00000037043	LOC100362366 Links NCBI RGD Ensembl Show fit	40S ribosomal protein S17-like
chr13_+_90116843 Show fit	0.02	ENSRNOT00000006306	Cd48 Links NCBI RGD Ensembl Show fit	Cd48 molecule
chr8_+_36850324 Show fit	0.02	ENSRNOT00000060448	Pate2 Links NCBI RGD Ensembl Show fit	prostate and testis expressed 2
chr8_-_14880644 Show fit	0.02	ENSRNOT00000015977	Fat3 Links NCBI RGD Ensembl Show fit	FAT atypical cadherin 3
chr4_+_183896303 Show fit	0.02	ENSRNOT00000055437	RGD1309621 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ10652
chr5_-_50138475 Show fit	0.02	ENSRNOT00000011969	Slc35a1 Links NCBI RGD Ensembl Show fit	solute carrier family 35 member A1
chr9_+_93086012 Show fit	0.02	ENSRNOT00000089470	Psmd1 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 1
chr4_-_13878126 Show fit	0.02	ENSRNOT00000007032	Gnat3 Links NCBI RGD Ensembl Show fit	G protein subunit alpha transducin 3
chr2_-_158156444 Show fit	0.02	ENSRNOT00000088559	Veph1 Links NCBI RGD Ensembl Show fit	ventricular zone expressed PH domain-containing 1
chr19_+_683484 Show fit	0.02	ENSRNOT00000090332	Terb1 Links NCBI RGD Ensembl Show fit	telomere repeat binding bouquet formation protein 1
chr5_-_164502469 Show fit	0.02	ENSRNOT00000051887	RGD1565622 Links NCBI RGD Ensembl Show fit	RGD1565622
chr4_-_101393329 Show fit	0.02	ENSRNOT00000007636	RGD1562515 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931417E11
chr10_-_67478848 Show fit	0.02	ENSRNOT00000005325	Tefm Links NCBI RGD Ensembl Show fit	transcription elongation factor, mitochondrial
chr17_+_69960160 Show fit	0.02	ENSRNOT00000023887	Ucn3 Links NCBI RGD Ensembl Show fit	urocortin 3
chr7_+_35773928 Show fit	0.02	ENSRNOT00000034639	Cep83 Links NCBI RGD Ensembl Show fit	centrosomal protein 83
chr1_-_90176105 Show fit	0.02	ENSRNOT00000076419	RGD1308428 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931406P16
chr10_-_87962846 Show fit	0.02	ENSRNOT00000018176	Krt31 Links NCBI RGD Ensembl Show fit	keratin 31
chr17_+_81280898 Show fit	0.01	ENSRNOT00000057785	Tmem236 Links NCBI RGD Ensembl Show fit	transmembrane protein 236
chrX_+_29520263 Show fit	0.01	ENSRNOT00000037047	Saxo1 Links NCBI RGD Ensembl Show fit	stabilizer of axonemal microtubules 1
chr15_+_42489377 Show fit	0.01	ENSRNOT00000064306	Pbk Links NCBI RGD Ensembl Show fit	PDZ binding kinase
chr1_+_51619875 Show fit	0.01	ENSRNOT00000023319	Pabpc6 Links NCBI RGD Ensembl Show fit	poly(A) binding protein, cytoplasmic 6
chr7_+_122160171 Show fit	0.01	ENSRNOT00000074499	LOC100362980 Links NCBI RGD Ensembl Show fit	CG3918-like
chr18_+_31574821 Show fit	0.01	ENSRNOT00000018499	Ndfip1 Links NCBI RGD Ensembl Show fit	Nedd4 family interacting protein 1
chr18_+_40596166 Show fit	0.01	ENSRNOT00000087984	Eif1a Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 1A
chrX_+_32495809 Show fit	0.01	ENSRNOT00000020999	RGD1565844 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1700045I19
chr7_-_140437467 Show fit	0.01	ENSRNOT00000087181	Fkbp11 Links NCBI RGD Ensembl Show fit	FK506 binding protein 11
chr3_+_121490812 Show fit	0.01	ENSRNOT00000023913	AABR07053707.1 Links NCBI RGD Ensembl Show fit
chr11_-_61698595 Show fit	0.01	ENSRNOT00000093445	Ccdc191 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 191
chr2_+_30347000 Show fit	0.01	ENSRNOT00000024291	Serf1 Links NCBI RGD Ensembl Show fit	small EDRK-rich factor 1
chr3_-_46942966 Show fit	0.01	ENSRNOT00000087439	Rbms1 Links NCBI RGD Ensembl Show fit	RNA binding motif, single stranded interacting protein 1
chr18_-_67224566 Show fit	0.01	ENSRNOT00000064947	Dcc Links NCBI RGD Ensembl Show fit	DCC netrin 1 receptor
chr2_+_252452269 Show fit	0.01	ENSRNOT00000021970	Uox Links NCBI RGD Ensembl Show fit	urate oxidase
chr8_+_59507990 Show fit	0.01	ENSRNOT00000018003	Hykk Links NCBI RGD Ensembl Show fit	hydroxylysine kinase
chr13_+_78979321 Show fit	0.01	ENSRNOT00000003857	Ankrd45 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 45
chr14_-_19132208 Show fit	0.01	ENSRNOT00000060535	Afm Links NCBI RGD Ensembl Show fit	afamin
chr13_-_72744295 Show fit	0.01	ENSRNOT00000093366 ENSRNOT00000077157	Ier5 Links NCBI RGD Ensembl Show fit	immediate early response 5
chr8_+_133197032 Show fit	0.01	ENSRNOT00000075564	Ccr5 Links NCBI RGD Ensembl Show fit	chemokine (C-C motif) receptor 5
chr19_-_49448072 Show fit	0.01	ENSRNOT00000014997	Cmc2 Links NCBI RGD Ensembl Show fit	C-x(9)-C motif containing 2
chr3_-_71845232 Show fit	0.01	ENSRNOT00000078645	Calcrl Links NCBI RGD Ensembl Show fit	calcitonin receptor like receptor
chr11_+_31539016 Show fit	0.01	ENSRNOT00000072856	Ifnar2 Links NCBI RGD Ensembl Show fit	interferon alpha and beta receptor subunit 2
chr11_-_17684903 Show fit	0.01	ENSRNOT00000051213	Tmprss15 Links NCBI RGD Ensembl Show fit	transmembrane protease, serine 15
chr3_-_15278645 Show fit	0.01	ENSRNOT00000032204	Ttll11 Links NCBI RGD Ensembl Show fit	tubulin tyrosine ligase like11
chr17_-_14679409 Show fit	0.01	ENSRNOT00000020704	Aspn Links NCBI RGD Ensembl Show fit	asporin
chr5_-_38923095 Show fit	0.01	ENSRNOT00000009146	AABR07047593.1 Links NCBI RGD Ensembl Show fit
chr11_+_74834050 Show fit	0.00	ENSRNOT00000002333	Atp13a4 Links NCBI RGD Ensembl Show fit	ATPase 13A4
chr4_-_2201749 Show fit	0.00	ENSRNOT00000089327	Lmbr1 Links NCBI RGD Ensembl Show fit	limb development membrane protein 1
chr14_-_83412375 Show fit	0.00	ENSRNOT00000036848	Sfi1 Links NCBI RGD Ensembl Show fit	SFI1 centrin binding protein
chr7_+_38900593 Show fit	0.00	ENSRNOT00000072166	Epyc Links NCBI RGD Ensembl Show fit	epiphycan
chr7_-_140213045 Show fit	0.00	ENSRNOT00000086886 ENSRNOT00000090730	LOC103690317 Links NCBI RGD Ensembl Show fit	KAT8 regulatory NSL complex subunit 2
chr1_-_91588609 Show fit	0.00	ENSRNOT00000050931	Snrpg Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein polypeptide G
chr3_+_138508899 Show fit	0.00	ENSRNOT00000009437	Kat14 Links NCBI RGD Ensembl Show fit	lysine acetyltransferase 14

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0034421	post-translational protein acetylation(GO:0034421)
0.0	0.1	GO:0051012	microtubule sliding(GO:0051012)
0.0	0.1	GO:0060279	positive regulation of ovulation(GO:0060279)
0.0	0.1	GO:0021627	muscle attachment(GO:0016203) olfactory nerve morphogenesis(GO:0021627) olfactory nerve structural organization(GO:0021629)
0.0	0.0	GO:0033386	geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.0	0.0	GO:2001226	negative regulation of chloride transport(GO:2001226)
0.0	0.0	GO:0001969	activation of membrane attack complex(GO:0001905) regulation of activation of membrane attack complex(GO:0001969)
0.0	0.0	GO:0016267	O-glycan processing, core 1(GO:0016267)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0043511	inhibin complex(GO:0043511)
0.0	0.0	GO:0005592	collagen type XI trimer(GO:0005592)
0.0	0.1	GO:1990716	axonemal central apparatus(GO:1990716)
0.0	0.1	GO:0031390	Ctf18 RFC-like complex(GO:0031390)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0070699	type II activin receptor binding(GO:0070699)
0.0	0.1	GO:0004886	9-cis retinoic acid receptor activity(GO:0004886)
0.0	0.0	GO:0001087	transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087)
0.0	0.0	GO:0016263	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity(GO:0016263)