GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxc4 Links NCBI RGD Ensembl	ENSRNOG00000016613	homeo box C4
Arx Links NCBI RGD Ensembl	ENSRNOG00000053562	aristaless related homeobox
Otp Links NCBI RGD Ensembl	ENSRNOG00000010560	orthopedia homeobox
Esx1 Links NCBI RGD Ensembl	ENSRNOG00000048011	ESX homeobox 1
Phox2b Links NCBI RGD Ensembl	ENSRNOG00000051929	paired-like homeobox 2b

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Arx	rn6_v1_chrX_+_62363953_62363953	0.95	1.2e-02	Click!
Otp	rn6_v1_chr2_+_24546536_24546536	0.38	5.2e-01	Click!
Hoxc4	rn6_v1_chr7_+_144647587_144647587	0.23	7.1e-01	Click!
Phox2b	rn6_v1_chr14_+_42714315_42714315	0.10	8.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_2174131 Show fit	2.26	ENSRNOT00000001313	Pcp2 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr1_-_190370499 Show fit	1.35	ENSRNOT00000084389	AABR07005618.1 Links NCBI RGD Ensembl Show fit
chr10_-_88670430 Show fit	1.12	ENSRNOT00000025547	Hcrt Links NCBI RGD Ensembl Show fit	hypocretin neuropeptide precursor
chrX_+_144994139 Show fit	0.83	ENSRNOT00000071783	LOC102546596 Links NCBI RGD Ensembl Show fit	pre-mRNA-splicing factor CWC22 homolog
chr2_+_127525285 Show fit	0.83	ENSRNOT00000093247	Intu Links NCBI RGD Ensembl Show fit	inturned planar cell polarity protein
chr15_+_37790141 Show fit	0.72	ENSRNOT00000076392 ENSRNOT00000091953	Il17d Links NCBI RGD Ensembl Show fit	interleukin 17D
chr4_+_169161585 Show fit	0.61	ENSRNOT00000079785	Emp1 Links NCBI RGD Ensembl Show fit	epithelial membrane protein 1
chrX_-_40086870 Show fit	0.59	ENSRNOT00000010027	Smpx Links NCBI RGD Ensembl Show fit	small muscle protein, X-linked
chr2_+_158097843 Show fit	0.56	ENSRNOT00000016541	Ptx3 Links NCBI RGD Ensembl Show fit	pentraxin 3
chr10_+_61685645 Show fit	0.48	ENSRNOT00000003933	Mnt Links NCBI RGD Ensembl Show fit	MAX network transcriptional repressor
chr2_+_122877286 Show fit	0.44	ENSRNOT00000033080	Arse Links NCBI RGD Ensembl Show fit	arylsulfatase E
chr2_+_145174876 Show fit	0.40	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr3_+_159368273 Show fit	0.39	ENSRNOT00000041688	Sgk2 Links NCBI RGD Ensembl Show fit	serum/glucocorticoid regulated kinase 2
chr4_+_169147243 Show fit	0.35	ENSRNOT00000011580	Emp1 Links NCBI RGD Ensembl Show fit	epithelial membrane protein 1
chr18_-_55891710 Show fit	0.29	ENSRNOT00000064686	Synpo Links NCBI RGD Ensembl Show fit	synaptopodin
chr10_+_43601689 Show fit	0.29	ENSRNOT00000029238	Mrpl22 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L22
chrX_-_138118696 Show fit	0.27	ENSRNOT00000084130	Frmd7 Links NCBI RGD Ensembl Show fit	FERM domain containing 7
chr15_-_34198921 Show fit	0.27	ENSRNOT00000024991	Nrl Links NCBI RGD Ensembl Show fit	neural retina leucine zipper
chr14_+_34446616 Show fit	0.26	ENSRNOT00000002976	Clock Links NCBI RGD Ensembl Show fit	clock circadian regulator
chr19_-_43192208 Show fit	0.24	ENSRNOT00000025179	Exosc6 Links NCBI RGD Ensembl Show fit	exosome component 6
chr4_+_29535852 Show fit	0.23	ENSRNOT00000087619	NEWGENE_621351 Links NCBI RGD Ensembl Show fit	collagen, type I, alpha 2
chr16_+_7035241 Show fit	0.22	ENSRNOT00000084977	Nek4 Links NCBI RGD Ensembl Show fit	NIMA-related kinase 4
chr6_+_28382962 Show fit	0.22	ENSRNOT00000016976	Pomc Links NCBI RGD Ensembl Show fit	proopiomelanocortin
chr6_-_104290579 Show fit	0.21	ENSRNOT00000066014	Erh Links NCBI RGD Ensembl Show fit	enhancer of rudimentary homolog (Drosophila)
chr5_-_2982603 Show fit	0.21	ENSRNOT00000045460	Kcnb2 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily B member 2
chr6_+_104291071 Show fit	0.20	ENSRNOT00000006798	Slc39a9 Links NCBI RGD Ensembl Show fit	solute carrier family 39, member 9
chr4_-_18396035 Show fit	0.20	ENSRNOT00000034692	Sema3a Links NCBI RGD Ensembl Show fit	semaphorin 3A
chr14_-_115052450 Show fit	0.20	ENSRNOT00000067998	Acyp2 Links NCBI RGD Ensembl Show fit	acylphosphatase 2
chr10_+_103206014 Show fit	0.20	ENSRNOT00000004081	Ttyh2 Links NCBI RGD Ensembl Show fit	tweety family member 2
chr17_-_79085076 Show fit	0.19	ENSRNOT00000057851	Fam171a1 Links NCBI RGD Ensembl Show fit	family with sequence similarity 171, member A1
chr2_-_198706428 Show fit	0.19	ENSRNOT00000085006	Polr3gl Links NCBI RGD Ensembl Show fit	RNA polymerase III subunit G like
chr4_+_168752133 Show fit	0.19	ENSRNOT00000010289	Apold1 Links NCBI RGD Ensembl Show fit	apolipoprotein L domain containing 1
chr1_-_278042312 Show fit	0.17	ENSRNOT00000018693	Ablim1 Links NCBI RGD Ensembl Show fit	actin-binding LIM protein 1
chr3_+_163552166 Show fit	0.17	ENSRNOT00000049082	Tp53rk Links NCBI RGD Ensembl Show fit	TP53 regulating kinase
chr5_+_187312 Show fit	0.17	ENSRNOT00000030857	LOC102557117 Links NCBI RGD Ensembl Show fit	zinc finger protein 120-like
chr7_+_28654733 Show fit	0.16	ENSRNOT00000006174	Pmch Links NCBI RGD Ensembl Show fit	pro-melanin-concentrating hormone
chr3_+_3389612 Show fit	0.15	ENSRNOT00000041984	Rpl8 Links NCBI RGD Ensembl Show fit	ribosomal protein L8
chr14_-_16903242 Show fit	0.15	ENSRNOT00000003001	Shroom3 Links NCBI RGD Ensembl Show fit	shroom family member 3
chr16_+_70081035 Show fit	0.14	ENSRNOT00000016098	LOC100912059 Links NCBI RGD Ensembl Show fit	ubiquitin carboxyl-terminal hydrolase 12-like
chr9_+_71915421 Show fit	0.13	ENSRNOT00000020447	Pikfyve Links NCBI RGD Ensembl Show fit	phosphoinositide kinase, FYVE-type zinc finger containing
chr8_+_71914867 Show fit	0.13	ENSRNOT00000023372	Dapk2 Links NCBI RGD Ensembl Show fit	death-associated protein kinase 2
chr12_+_49665282 Show fit	0.13	ENSRNOT00000086397	Grk3 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor kinase 3
chr1_+_80279706 Show fit	0.13	ENSRNOT00000047105	Ppp1r13l Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 13 like
chr13_-_102857551 Show fit	0.13	ENSRNOT00000080309	Mark1 Links NCBI RGD Ensembl Show fit	microtubule affinity regulating kinase 1
chr20_+_3176107 Show fit	0.12	ENSRNOT00000001036	RT1-S3 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus S3
chr4_-_180505916 Show fit	0.12	ENSRNOT00000086465	AABR07062512.1 Links NCBI RGD Ensembl Show fit
chr6_+_101532518 Show fit	0.12	ENSRNOT00000075054	Gphn Links NCBI RGD Ensembl Show fit	gephyrin
chr10_-_67401836 Show fit	0.12	ENSRNOT00000073071	Crlf3 Links NCBI RGD Ensembl Show fit	cytokine receptor-like factor 3
chr17_-_14627937 Show fit	0.12	ENSRNOT00000020532	NEWGENE_1308171 Links NCBI RGD Ensembl Show fit	osteoglycin
chr20_+_3155652 Show fit	0.12	ENSRNOT00000042882	RT1-S2 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus S2
chr20_+_42966140 Show fit	0.12	ENSRNOT00000000707	Marcks Links NCBI RGD Ensembl Show fit	myristoylated alanine rich protein kinase C substrate
chr2_+_30685840 Show fit	0.12	ENSRNOT00000031385	Ccdc125 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 125
chr8_-_83280888 Show fit	0.11	ENSRNOT00000052341	Gfral Links NCBI RGD Ensembl Show fit	GDNF family receptor alpha like
chrX_+_111735820 Show fit	0.11	ENSRNOT00000086948	Frmpd3 Links NCBI RGD Ensembl Show fit	FERM and PDZ domain containing 3
chr12_-_10967326 Show fit	0.11	ENSRNOT00000042095	LOC100912059 Links NCBI RGD Ensembl Show fit	ubiquitin carboxyl-terminal hydrolase 12-like
chr16_-_20562399 Show fit	0.11	ENSRNOT00000031692	Lrrc25 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 25
chr5_-_161981441 Show fit	0.10	ENSRNOT00000020316	Pdpn Links NCBI RGD Ensembl Show fit	podoplanin
chr7_-_143967484 Show fit	0.10	ENSRNOT00000081758	Sp7 Links NCBI RGD Ensembl Show fit	Sp7 transcription factor
chr13_-_50514151 Show fit	0.10	ENSRNOT00000003951	Ren Links NCBI RGD Ensembl Show fit	renin
chr2_+_240642847 Show fit	0.10	ENSRNOT00000079694	Ube2d3 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2D 3
chr3_-_57607683 Show fit	0.10	ENSRNOT00000093222 ENSRNOT00000058524	Mettl8 Links NCBI RGD Ensembl Show fit	methyltransferase like 8
chr14_+_45982244 Show fit	0.10	ENSRNOT00000076881 ENSRNOT00000002984	Rell1 Links NCBI RGD Ensembl Show fit	RELT-like 1
chr15_-_80713153 Show fit	0.10	ENSRNOT00000063800	Klhl1 Links NCBI RGD Ensembl Show fit	kelch-like family member 1
chr18_-_43945273 Show fit	0.10	ENSRNOT00000088900	Dtwd2 Links NCBI RGD Ensembl Show fit	DTW domain containing 2
chr4_+_88328061 Show fit	0.10	ENSRNOT00000084775	Vom1r87 Links NCBI RGD Ensembl Show fit	vomeronasal 1 receptor 87
chr20_+_3246739 Show fit	0.09	ENSRNOT00000061299	RT1-T24-2 Links NCBI RGD Ensembl Show fit	RT1 class I, locus T24, gene 2
chr17_-_87826421 Show fit	0.09	ENSRNOT00000068156	Arhgap21 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 21
chr4_-_168656673 Show fit	0.09	ENSRNOT00000009341	Gpr19 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 19
chr12_+_25435567 Show fit	0.09	ENSRNOT00000092982	Gtf2i Links NCBI RGD Ensembl Show fit	general transcription factor II I
chr5_+_28485619 Show fit	0.08	ENSRNOT00000093341 ENSRNOT00000093129	LOC100912373 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100912373
chr20_+_44680449 Show fit	0.08	ENSRNOT00000000728	Traf3ip2 Links NCBI RGD Ensembl Show fit	Traf3 interacting protein 2
chr11_-_62067655 Show fit	0.08	ENSRNOT00000093382	Zbtb20 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 20
chr8_-_126390801 Show fit	0.08	ENSRNOT00000089732	AABR07071661.1 Links NCBI RGD Ensembl Show fit
chr1_-_215284548 Show fit	0.08	ENSRNOT00000090375	Cttn Links NCBI RGD Ensembl Show fit	cortactin
chr5_+_50381244 Show fit	0.08	ENSRNOT00000012385	Cga Links NCBI RGD Ensembl Show fit	glycoprotein hormones, alpha polypeptide
chr6_+_104291340 Show fit	0.08	ENSRNOT00000089313	Slc39a9 Links NCBI RGD Ensembl Show fit	solute carrier family 39, member 9
chr13_-_111581018 Show fit	0.08	ENSRNOT00000083072 ENSRNOT00000077981	Sertad4 Links NCBI RGD Ensembl Show fit	SERTA domain containing 4
chr6_-_7058314 Show fit	0.08	ENSRNOT00000045996	Haao Links NCBI RGD Ensembl Show fit	3-hydroxyanthranilate 3,4-dioxygenase
chr4_+_180291389 Show fit	0.08	ENSRNOT00000002465	Sspn Links NCBI RGD Ensembl Show fit	sarcospan
chr17_-_22678253 Show fit	0.08	ENSRNOT00000083122	LOC100362172 Links NCBI RGD Ensembl Show fit	LRRGT00112-like
chr4_+_24612205 Show fit	0.08	ENSRNOT00000057382	Ewsr1 Links NCBI RGD Ensembl Show fit	EWS RNA-binding protein 1
chr10_-_29026002 Show fit	0.08	ENSRNOT00000005070	Pttg1 Links NCBI RGD Ensembl Show fit	pituitary tumor-transforming 1
chrX_+_74200972 Show fit	0.07	ENSRNOT00000076956	Chic1 Links NCBI RGD Ensembl Show fit	cysteine-rich hydrophobic domain 1
chrX_-_77559348 Show fit	0.07	ENSRNOT00000047823	Fndc3c1 Links NCBI RGD Ensembl Show fit	fibronectin type III domain containing 3C1
chr20_+_4966817 Show fit	0.07	ENSRNOT00000081527 ENSRNOT00000081265	Lsm2 Links NCBI RGD Ensembl Show fit	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
chr16_-_83084975 Show fit	0.07	ENSRNOT00000017947	Arhgef7 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 7
chr3_-_111087347 Show fit	0.07	ENSRNOT00000018277	Rhov Links NCBI RGD Ensembl Show fit	ras homolog family member V
chr12_-_35979193 Show fit	0.07	ENSRNOT00000071104	Tmem132b Links NCBI RGD Ensembl Show fit	transmembrane protein 132B
chr6_+_47940183 Show fit	0.07	ENSRNOT00000011951	Adi1 Links NCBI RGD Ensembl Show fit	acireductone dioxygenase 1
chr19_+_39229754 Show fit	0.07	ENSRNOT00000050612	Vps4a Links NCBI RGD Ensembl Show fit	vacuolar protein sorting 4 homolog A
chr10_-_4257868 Show fit	0.07	ENSRNOT00000035886	Tnfrsf17 Links NCBI RGD Ensembl Show fit	TNF receptor superfamily member 17
chr13_-_32427177 Show fit	0.07	ENSRNOT00000044628	Cdh19 Links NCBI RGD Ensembl Show fit	cadherin 19
chr17_-_90071408 Show fit	0.06	ENSRNOT00000071978	Pdss1 Links NCBI RGD Ensembl Show fit	decaprenyl diphosphate synthase subunit 1
chr1_+_88113445 Show fit	0.06	ENSRNOT00000056955	Ggn Links NCBI RGD Ensembl Show fit	gametogenetin
chr3_-_120076788 Show fit	0.06	ENSRNOT00000047158	Kcnip3 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel interacting protein 3
chr7_-_28711761 Show fit	0.06	ENSRNOT00000006249	Parpbp Links NCBI RGD Ensembl Show fit	PARP1 binding protein
chr6_-_26241337 Show fit	0.06	ENSRNOT00000006525	Slc4a1ap Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 1 adaptor protein
chr9_+_10941613 Show fit	0.06	ENSRNOT00000070794	Sema6b Links NCBI RGD Ensembl Show fit	semaphorin 6B
chr12_-_46493203 Show fit	0.06	ENSRNOT00000057036	Cit Links NCBI RGD Ensembl Show fit	citron rho-interacting serine/threonine kinase
chr13_+_57243877 Show fit	0.06	ENSRNOT00000083693	Kcnt2 Links NCBI RGD Ensembl Show fit	potassium sodium-activated channel subfamily T member 2
chr7_+_2458833 Show fit	0.06	ENSRNOT00000085092	Naca Links NCBI RGD Ensembl Show fit	nascent polypeptide-associated complex alpha subunit
chr2_+_80269661 Show fit	0.06	ENSRNOT00000015975	AABR07008940.1 Links NCBI RGD Ensembl Show fit
chr9_+_61692154 Show fit	0.06	ENSRNOT00000082300	Hspe1 Links NCBI RGD Ensembl Show fit	heat shock protein family E member 1
chr10_+_29033989 Show fit	0.06	ENSRNOT00000088322	Slu7 Links NCBI RGD Ensembl Show fit	SLU7 homolog, splicing factor
chr19_+_40855433 Show fit	0.06	ENSRNOT00000023823	Il34 Links NCBI RGD Ensembl Show fit	interleukin 34
chr2_-_185852759 Show fit	0.06	ENSRNOT00000049461	Mab21l2 Links NCBI RGD Ensembl Show fit	mab-21 like 2
chr1_-_215033460 Show fit	0.06	ENSRNOT00000044565	Dusp8 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 8
chr17_+_22984844 Show fit	0.06	ENSRNOT00000078310	Nedd9 Links NCBI RGD Ensembl Show fit	neural precursor cell expressed, developmentally down-regulated 9
chr9_+_27546528 Show fit	0.06	ENSRNOT00000051403	Khdc1 Links NCBI RGD Ensembl Show fit	KH homology domain containing 1
chrX_+_15113878 Show fit	0.06	ENSRNOT00000007464	Wdr13 Links NCBI RGD Ensembl Show fit	WD repeat domain 13
chr17_-_43776460 Show fit	0.05	ENSRNOT00000089055	Hist2h3c2 Links NCBI RGD Ensembl Show fit	histone cluster 2, H3c2
chr9_-_105693357 Show fit	0.05	ENSRNOT00000066968	Nudt12 Links NCBI RGD Ensembl Show fit	nudix hydrolase 12
chr4_-_72143748 Show fit	0.05	ENSRNOT00000024428	Tcaf1 Links NCBI RGD Ensembl Show fit	TRPM8 channel-associated factor 1
chr8_+_40009691 Show fit	0.05	ENSRNOT00000042679	Vsig2 Links NCBI RGD Ensembl Show fit	V-set and immunoglobulin domain containing 2
chr5_-_119564846 Show fit	0.05	ENSRNOT00000012977	Cyp2j4 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily j, polypeptide 4
chr11_+_36851038 Show fit	0.05	ENSRNOT00000002221 ENSRNOT00000061047	Pcp4 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 4
chr4_+_155321553 Show fit	0.05	ENSRNOT00000089614	Mfap5 Links NCBI RGD Ensembl Show fit	microfibrillar associated protein 5
chr20_+_3230052 Show fit	0.05	ENSRNOT00000078454	RT1-T24-3 Links NCBI RGD Ensembl Show fit	RT1 class I, locus T24, gene 3
chr3_+_14889510 Show fit	0.05	ENSRNOT00000080760	Dab2ip Links NCBI RGD Ensembl Show fit	DAB2 interacting protein
chr9_+_20241062 Show fit	0.05	ENSRNOT00000071593	LOC100911585 Links NCBI RGD Ensembl Show fit	leucine-rich repeat-containing protein 23-like
chr8_+_106449321 Show fit	0.05	ENSRNOT00000018622	Rbp1 Links NCBI RGD Ensembl Show fit	retinol binding protein 1
chr1_-_107373807 Show fit	0.05	ENSRNOT00000056024	Svip Links NCBI RGD Ensembl Show fit	small VCP interacting protein
chr4_-_157304653 Show fit	0.05	ENSRNOT00000051613	Lrrc23 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 23
chr11_+_46184871 Show fit	0.05	ENSRNOT00000048417	Tfg Links NCBI RGD Ensembl Show fit	Trk-fused gene
chr4_-_115208026 Show fit	0.05	ENSRNOT00000084388 ENSRNOT00000066678	Dguok Links NCBI RGD Ensembl Show fit	deoxyguanosine kinase
chr14_+_82769642 Show fit	0.05	ENSRNOT00000065393	Ctbp1 Links NCBI RGD Ensembl Show fit	C-terminal binding protein 1
chr3_-_154627257 Show fit	0.05	ENSRNOT00000018328	Tgm2 Links NCBI RGD Ensembl Show fit	transglutaminase 2
chr16_+_2537248 Show fit	0.05	ENSRNOT00000017995	Asb14 Links NCBI RGD Ensembl Show fit	ankyrin repeat and SOCS box-containing 14
chr17_-_89923423 Show fit	0.05	ENSRNOT00000076964	Acbd5 Links NCBI RGD Ensembl Show fit	acyl-CoA binding domain containing 5
chr3_-_37854561 Show fit	0.05	ENSRNOT00000076095	Neb Links NCBI RGD Ensembl Show fit	nebulin
chr1_+_229416489 Show fit	0.05	ENSRNOT00000028617	Olr336 Links NCBI RGD Ensembl Show fit	olfactory receptor 336
chr8_-_39460844 Show fit	0.04	ENSRNOT00000048875	Pknox2 Links NCBI RGD Ensembl Show fit	PBX/knotted 1 homeobox 2
chr18_-_37819097 Show fit	0.04	ENSRNOT00000025880	Dpysl3 Links NCBI RGD Ensembl Show fit	dihydropyrimidinase-like 3
chr2_+_219598162 Show fit	0.04	ENSRNOT00000020297	Lrrc39 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 39
chr9_+_117538009 Show fit	0.04	ENSRNOT00000022878	Epb41l3 Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1-like 3
chr2_+_239415046 Show fit	0.04	ENSRNOT00000072196	Cxxc4 Links NCBI RGD Ensembl Show fit	CXXC finger protein 4
chr18_-_60002529 Show fit	0.04	ENSRNOT00000081014 ENSRNOT00000024264 ENSRNOT00000059162	Nars Links NCBI RGD Ensembl Show fit	asparaginyl-tRNA synthetase
chr15_+_108318664 Show fit	0.04	ENSRNOT00000057469	Ubac2 Links NCBI RGD Ensembl Show fit	UBA domain containing 2
chr12_-_37538403 Show fit	0.04	ENSRNOT00000001402	Snrnp35 Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein U11/U12 subunit 35
chr7_-_58365313 Show fit	0.04	ENSRNOT00000005443	Thap2 Links NCBI RGD Ensembl Show fit	THAP domain containing 2
chr4_-_180234804 Show fit	0.04	ENSRNOT00000070957	Bhlhe41 Links NCBI RGD Ensembl Show fit	basic helix-loop-helix family, member e41
chr4_-_170932618 Show fit	0.04	ENSRNOT00000007779	Arhgdib Links NCBI RGD Ensembl Show fit	Rho GDP dissociation inhibitor beta
chr1_-_15374850 Show fit	0.04	ENSRNOT00000016728	Pex7 Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 7
chr7_+_120923274 Show fit	0.04	ENSRNOT00000049247	Gtpbp1 Links NCBI RGD Ensembl Show fit	GTP binding protein 1
chr1_-_217631862 Show fit	0.04	ENSRNOT00000078514 ENSRNOT00000079805	Cttn Links NCBI RGD Ensembl Show fit	cortactin
chr2_-_33025271 Show fit	0.04	ENSRNOT00000074941	NEWGENE_1310139 Links NCBI RGD Ensembl Show fit	microtubule associated serine/threonine kinase family member 4
chr12_-_23727535 Show fit	0.04	ENSRNOT00000085911 ENSRNOT00000001950	Dtx2 Links NCBI RGD Ensembl Show fit	deltex E3 ubiquitin ligase 2
chr4_-_66955732 Show fit	0.04	ENSRNOT00000084282	Kdm7a Links NCBI RGD Ensembl Show fit	lysine (K)-specific demethylase 7A
chr1_-_228014924 Show fit	0.04	ENSRNOT00000042091	Oosp2 Links NCBI RGD Ensembl Show fit	oocyte secreted protein 2
chr12_-_45801842 Show fit	0.04	ENSRNOT00000078837	AABR07036513.1 Links NCBI RGD Ensembl Show fit
chr2_-_186245342 Show fit	0.04	ENSRNOT00000057062 ENSRNOT00000022292	Dclk2 Links NCBI RGD Ensembl Show fit	doublecortin-like kinase 2
chr9_+_79630604 Show fit	0.04	ENSRNOT00000021539 ENSRNOT00000083979	Tmem169 Links NCBI RGD Ensembl Show fit	transmembrane protein 169
chr4_-_80395502 Show fit	0.04	ENSRNOT00000014437	Npvf Links NCBI RGD Ensembl Show fit	neuropeptide VF precursor
chr18_+_29951094 Show fit	0.04	ENSRNOT00000027402	LOC102553180 Links NCBI RGD Ensembl Show fit	protocadherin alpha-1-like
chr8_+_22559098 Show fit	0.04	ENSRNOT00000041091	LOC691141 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691141
chr1_+_251633199 Show fit	0.04	ENSRNOT00000084785	AC094647.2 Links NCBI RGD Ensembl Show fit
chr2_-_147392062 Show fit	0.04	ENSRNOT00000021535	Tm4sf1 Links NCBI RGD Ensembl Show fit	transmembrane 4 L six family member 1
chr7_-_120770435 Show fit	0.03	ENSRNOT00000077000	Ddx17 Links NCBI RGD Ensembl Show fit	DEAD-box helicase 17
chr17_-_78499881 Show fit	0.03	ENSRNOT00000079260	Fam107b Links NCBI RGD Ensembl Show fit	family with sequence similarity 107, member B
chr20_+_19325121 Show fit	0.03	ENSRNOT00000058151	Phyhipl Links NCBI RGD Ensembl Show fit	phytanoyl-CoA 2-hydroxylase interacting protein-like
chrX_+_37329779 Show fit	0.03	ENSRNOT00000038352 ENSRNOT00000088802	Pdha1 Links NCBI RGD Ensembl Show fit	pyruvate dehydrogenase (lipoamide) alpha 1
chr19_+_46465647 Show fit	0.03	ENSRNOT00000093714	Nudt7 Links NCBI RGD Ensembl Show fit	nudix hydrolase 7
chr10_+_83476107 Show fit	0.03	ENSRNOT00000075733	Phb Links NCBI RGD Ensembl Show fit	prohibitin
chr5_+_114516889 Show fit	0.03	ENSRNOT00000011767	Fggy Links NCBI RGD Ensembl Show fit	FGGY carbohydrate kinase domain containing
chr2_-_96509424 Show fit	0.03	ENSRNOT00000090866	Zc2hc1a Links NCBI RGD Ensembl Show fit	zinc finger, C2HC-type containing 1A
chr10_-_62184874 Show fit	0.03	ENSRNOT00000004229	Rpa1 Links NCBI RGD Ensembl Show fit	replication protein A1
chr16_-_29936307 Show fit	0.03	ENSRNOT00000088707	Ddx60 Links NCBI RGD Ensembl Show fit	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
chr5_+_153269526 Show fit	0.03	ENSRNOT00000091494	Syf2 Links NCBI RGD Ensembl Show fit	SYF2 pre-mRNA-splicing factor
chr5_+_135354700 Show fit	0.03	ENSRNOT00000021850	Ipp Links NCBI RGD Ensembl Show fit	intracisternal A particle-promoted polypeptide
chr7_-_29171783 Show fit	0.03	ENSRNOT00000079235	Mybpc1 Links NCBI RGD Ensembl Show fit	myosin binding protein C, slow type
chr13_+_84474319 Show fit	0.03	ENSRNOT00000031367 ENSRNOT00000072244 ENSRNOT00000072897 ENSRNOT00000064168 ENSRNOT00000074954 ENSRNOT00000073696	Ildr2 Links NCBI RGD Ensembl Show fit	immunoglobulin-like domain containing receptor 2
chr7_+_2752680 Show fit	0.03	ENSRNOT00000033726	Cs Links NCBI RGD Ensembl Show fit	citrate synthase
chr2_-_123972356 Show fit	0.03	ENSRNOT00000023348	Il21 Links NCBI RGD Ensembl Show fit	interleukin 21
chr2_+_248398917 Show fit	0.03	ENSRNOT00000045855	Gbp1 Links NCBI RGD Ensembl Show fit	guanylate binding protein 1
chr18_+_70739492 Show fit	0.03	ENSRNOT00000085601	Acaa2 Links NCBI RGD Ensembl Show fit	acetyl-CoA acyltransferase 2
chrX_-_104932508 Show fit	0.03	ENSRNOT00000075325	Nox1 Links NCBI RGD Ensembl Show fit	NADPH oxidase 1
chr16_+_46731403 Show fit	0.03	ENSRNOT00000017624	Tenm3 Links NCBI RGD Ensembl Show fit	teneurin transmembrane protein 3
chr5_+_139790395 Show fit	0.03	ENSRNOT00000015033	Rims3 Links NCBI RGD Ensembl Show fit	regulating synaptic membrane exocytosis 3
chrX_+_78042859 Show fit	0.03	ENSRNOT00000003286	Lpar4 Links NCBI RGD Ensembl Show fit	lysophosphatidic acid receptor 4
chr16_+_39145230 Show fit	0.03	ENSRNOT00000092942	Adam21 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 21
chr4_-_100252755 Show fit	0.03	ENSRNOT00000017301	Vamp8 Links NCBI RGD Ensembl Show fit	vesicle-associated membrane protein 8
chr3_+_7884822 Show fit	0.03	ENSRNOT00000019157	Med27 Links NCBI RGD Ensembl Show fit	mediator complex subunit 27
chr16_+_7758996 Show fit	0.03	ENSRNOT00000061063	Btd Links NCBI RGD Ensembl Show fit	biotinidase
chr8_-_121973125 Show fit	0.03	ENSRNOT00000012114	Pdcd6ip Links NCBI RGD Ensembl Show fit	programmed cell death 6 interacting protein
chr13_+_90260783 Show fit	0.03	ENSRNOT00000050547	Cd84 Links NCBI RGD Ensembl Show fit	CD84 molecule
chr1_+_213636093 Show fit	0.02	ENSRNOT00000019642	Psmd13 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 13
chr5_-_17061361 Show fit	0.02	ENSRNOT00000089318	Penk Links NCBI RGD Ensembl Show fit	proenkephalin
chr10_-_65502936 Show fit	0.02	ENSRNOT00000089615	Supt6h Links NCBI RGD Ensembl Show fit	SPT6 homolog, histone chaperone
chr1_-_185569190 Show fit	0.02	ENSRNOT00000090773	RGD1311703 Links NCBI RGD Ensembl Show fit	similar to sid2057p
chr10_+_83201311 Show fit	0.02	ENSRNOT00000006179	Slc35b1 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member B1
chr10_+_69412017 Show fit	0.02	ENSRNOT00000009448	Ccl2 Links NCBI RGD Ensembl Show fit	C-C motif chemokine ligand 2
chr11_+_47061354 Show fit	0.02	ENSRNOT00000039997	Pcnp Links NCBI RGD Ensembl Show fit	PEST proteolytic signal containing nuclear protein
chr5_-_166116516 Show fit	0.02	ENSRNOT00000079919 ENSRNOT00000080888	Kif1b Links NCBI RGD Ensembl Show fit	kinesin family member 1B
chr14_+_22375955 Show fit	0.02	ENSRNOT00000063915 ENSRNOT00000034784	Ugt2b37 Links NCBI RGD Ensembl Show fit	UDP-glucuronosyltransferase 2 family, member 37
chr6_+_26241672 Show fit	0.02	ENSRNOT00000006543	Supt7l Links NCBI RGD Ensembl Show fit	SPT7-like STAGA complex gamma subunit
chr16_+_25773602 Show fit	0.02	ENSRNOT00000047750	Gapdh-ps2 Links NCBI RGD Ensembl Show fit	glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2
chr13_+_49005405 Show fit	0.02	ENSRNOT00000092560 ENSRNOT00000076457	Lemd1 Links NCBI RGD Ensembl Show fit	LEM domain containing 1
chr4_-_146954159 Show fit	0.02	ENSRNOT00000010397	Tamm41 Links NCBI RGD Ensembl Show fit	TAM41 mitochondrial translocator assembly and maintenance homolog
chr8_-_78096302 Show fit	0.02	ENSRNOT00000086185 ENSRNOT00000077999	Myzap Links NCBI RGD Ensembl Show fit	myocardial zonula adherens protein
chr10_-_82117109 Show fit	0.02	ENSRNOT00000079711	Abcc3 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily C member 3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	2.0	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.2	0.6	GO:0052422	modulation of catalytic activity in other organism involved in symbiotic interaction(GO:0052203) modulation by host of symbiont catalytic activity(GO:0052422) regulation of exo-alpha-sialidase activity(GO:1903015)
0.2	1.1	GO:0051970	negative regulation of transmission of nerve impulse(GO:0051970)
0.1	0.3	GO:0007468	regulation of rhodopsin gene expression(GO:0007468)
0.1	0.3	GO:0098886	modification of dendritic spine(GO:0098886)
0.1	0.9	GO:0032060	bleb assembly(GO:0032060)
0.1	0.2	GO:0021886	cerebral cortex tangential migration using cell-axon interactions(GO:0021824) gonadotrophin-releasing hormone neuronal migration to the hypothalamus(GO:0021828) hypothalamic tangential migration using cell-axon interactions(GO:0021856) hypothalamus gonadotrophin-releasing hormone neuron differentiation(GO:0021886) hypothalamus gonadotrophin-releasing hormone neuron development(GO:0021888) facioacoustic ganglion development(GO:1903375)
0.0	0.1	GO:2000424	regulation of eosinophil chemotaxis(GO:2000422) positive regulation of eosinophil chemotaxis(GO:2000424)
0.0	0.1	GO:0046154	eye pigment metabolic process(GO:0042441) pigment metabolic process involved in developmental pigmentation(GO:0043324) pigment metabolic process involved in pigmentation(GO:0043474) rhodopsin metabolic process(GO:0046154)
0.0	0.3	GO:2000323	negative regulation of glucocorticoid receptor signaling pathway(GO:2000323)
0.0	0.1	GO:0032679	antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway(GO:0002488) antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent(GO:0002489) TRAIL production(GO:0032639) regulation of TRAIL production(GO:0032679) positive regulation of TRAIL production(GO:0032759)
0.0	0.2	GO:0034475	U4 snRNA 3'-end processing(GO:0034475) DNA deamination(GO:0045006) polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.0	0.5	GO:0010839	negative regulation of keratinocyte proliferation(GO:0010839)
0.0	0.2	GO:0032227	negative regulation of synaptic transmission, dopaminergic(GO:0032227)
0.0	0.2	GO:2000852	regulation of corticosterone secretion(GO:2000852)
0.0	0.1	GO:1901227	negative regulation of transcription from RNA polymerase II promoter involved in heart development(GO:1901227)
0.0	0.1	GO:0099628	establishment of synaptic specificity at neuromuscular junction(GO:0007529) gamma-aminobutyric acid receptor clustering(GO:0097112) receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628)
0.0	0.1	GO:0090611	ubiquitin-independent protein catabolic process via the multivesicular body sorting pathway(GO:0090611)
0.0	0.1	GO:0051684	maintenance of Golgi location(GO:0051684)
0.0	0.1	GO:0002003	angiotensin maturation(GO:0002003) renin-angiotensin regulation of aldosterone production(GO:0002018)
0.0	0.1	GO:1900020	regulation of protein kinase C activity(GO:1900019) positive regulation of protein kinase C activity(GO:1900020)
0.0	0.1	GO:0019805	quinolinate biosynthetic process(GO:0019805)
0.0	0.2	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.0	0.2	GO:0001302	replicative cell aging(GO:0001302)
0.0	0.1	GO:0006742	NADP catabolic process(GO:0006742) NAD catabolic process(GO:0019677)
0.0	0.1	GO:1903070	negative regulation of ER-associated ubiquitin-dependent protein catabolic process(GO:1903070)
0.0	0.0	GO:0018199	peptidyl-glutamine modification(GO:0018199)
0.0	0.1	GO:0000389	mRNA 3'-splice site recognition(GO:0000389)
0.0	0.1	GO:0098885	modification of postsynaptic actin cytoskeleton(GO:0098885)
0.0	0.1	GO:1904009	cellular response to monosodium glutamate(GO:1904009)
0.0	0.1	GO:0036324	vascular endothelial growth factor receptor-2 signaling pathway(GO:0036324)
0.0	0.0	GO:0071461	cellular response to redox state(GO:0071461)
0.0	0.0	GO:1903758	regulation of transcription from RNA polymerase II promoter by histone modification(GO:1903756) negative regulation of transcription from RNA polymerase II promoter by histone modification(GO:1903758)
0.0	0.1	GO:0014886	transition between slow and fast fiber(GO:0014886)
0.0	0.0	GO:0030242	pexophagy(GO:0030242)
0.0	0.1	GO:0019509	L-methionine biosynthetic process from methylthioadenosine(GO:0019509)
0.0	0.0	GO:0034031	coenzyme A catabolic process(GO:0015938) nucleoside bisphosphate catabolic process(GO:0033869) ribonucleoside bisphosphate catabolic process(GO:0034031) purine nucleoside bisphosphate catabolic process(GO:0034034) acetyl-CoA catabolic process(GO:0046356)
0.0	0.1	GO:0042118	endothelial cell activation(GO:0042118)
0.0	0.1	GO:0010572	positive regulation of platelet activation(GO:0010572)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.6	GO:0005927	muscle tendon junction(GO:0005927)
0.1	0.3	GO:0097444	spine apparatus(GO:0097444)
0.0	0.3	GO:0005726	perichromatin fibrils(GO:0005726)
0.0	0.2	GO:0000408	EKC/KEOPS complex(GO:0000408)
0.0	0.1	GO:0032398	MHC class Ib protein complex(GO:0032398)
0.0	0.1	GO:0042585	germinal vesicle(GO:0042585) dendritic branch(GO:0044307)
0.0	0.3	GO:0000177	cytoplasmic exosome (RNase complex)(GO:0000177)
0.0	0.1	GO:0099571	postsynaptic actin cytoskeleton(GO:0098871) postsynaptic cytoskeleton(GO:0099571)
0.0	0.1	GO:1990032	parallel fiber(GO:1990032)
0.0	0.2	GO:0034709	methylosome(GO:0034709)
0.0	0.1	GO:1990726	Lsm1-7-Pat1 complex(GO:1990726)
0.0	0.1	GO:0032593	insulin-responsive compartment(GO:0032593)
0.0	0.0	GO:0005967	mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.0	0.2	GO:0005666	DNA-directed RNA polymerase III complex(GO:0005666)
0.0	0.1	GO:0030868	smooth endoplasmic reticulum membrane(GO:0030868) smooth endoplasmic reticulum part(GO:0097425)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0004065	arylsulfatase activity(GO:0004065)
0.1	0.3	GO:0001849	complement component C1q binding(GO:0001849)
0.1	0.2	GO:0070996	type 1 melanocortin receptor binding(GO:0070996)
0.0	1.1	GO:0005184	neuropeptide hormone activity(GO:0005184)
0.0	0.1	GO:0008940	nitrate reductase activity(GO:0008940)
0.0	0.1	GO:1990932	5.8S rRNA binding(GO:1990932)
0.0	0.4	GO:0017081	chloride channel regulator activity(GO:0017081)
0.0	0.1	GO:0047696	beta-adrenergic receptor kinase activity(GO:0047696)
0.0	0.3	GO:0030215	semaphorin receptor binding(GO:0030215)
0.0	0.1	GO:0031871	proteinase activated receptor binding(GO:0031871)
0.0	0.1	GO:0000386	second spliceosomal transesterification activity(GO:0000386)
0.0	0.1	GO:0005157	macrophage colony-stimulating factor receptor binding(GO:0005157)
0.0	0.3	GO:0043522	leucine zipper domain binding(GO:0043522)
0.0	0.1	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0	0.1	GO:0035529	NADH pyrophosphatase activity(GO:0035529)
0.0	0.1	GO:0019136	deoxynucleoside kinase activity(GO:0019136)
0.0	0.0	GO:0004739	pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.0	0.1	GO:0042608	T cell receptor binding(GO:0042608)
0.0	0.2	GO:0008327	methyl-CpG binding(GO:0008327)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	PID SYNDECAN 3 PATHWAY	Syndecan-3-mediated signaling events
0.0	0.3	PID CIRCADIAN PATHWAY	Circadian rhythm pathway
0.0	0.5	ST ADRENERGIC	Adrenergic Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	REACTOME THE ACTIVATION OF ARYLSULFATASES	Genes involved in The activation of arylsulfatases
0.0	0.3	REACTOME PEPTIDE HORMONE BIOSYNTHESIS	Genes involved in Peptide hormone biosynthesis
0.0	0.2	REACTOME CRMPS IN SEMA3A SIGNALING	Genes involved in CRMPs in Sema3A signaling
0.0	0.2	REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE	Genes involved in mRNA Decay by 3' to 5' Exoribonuclease
0.0	0.1	REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE	Genes involved in Synthesis of PIPs at the late endosome membrane
0.0	0.1	REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE	Genes involved in Regulation of Insulin Secretion by Acetylcholine
0.0	0.1	REACTOME ROLE OF DCC IN REGULATING APOPTOSIS	Genes involved in Role of DCC in regulating apoptosis