GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Six4 Links NCBI RGD Ensembl	ENSRNOG00000007250	SIX homeobox 4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Six4	rn6_v1_chr6_-_95998529_95998529	-0.16	8.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_120580743 Show fit	0.15	ENSRNOT00000017181	Maff Links NCBI RGD Ensembl Show fit	MAF bZIP transcription factor F
chr8_-_46694613 Show fit	0.12	ENSRNOT00000084514	AC133265.1 Links NCBI RGD Ensembl Show fit
chr1_-_218657925 Show fit	0.08	ENSRNOT00000020425	Gal Links NCBI RGD Ensembl Show fit	galanin and GMAP prepropeptide
chr4_+_33638709 Show fit	0.07	ENSRNOT00000009888 ENSRNOT00000034719 ENSRNOT00000052333	Tac1 Links NCBI RGD Ensembl Show fit	tachykinin, precursor 1
chr1_+_80135391 Show fit	0.07	ENSRNOT00000021893	Gpr4 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 4
chr7_+_72599479 Show fit	0.06	ENSRNOT00000018963	AABR07057460.1 Links NCBI RGD Ensembl Show fit
chr1_+_221773254 Show fit	0.06	ENSRNOT00000028646	Rasgrp2 Links NCBI RGD Ensembl Show fit	RAS guanyl releasing protein 2
chr12_+_27155587 Show fit	0.06	ENSRNOT00000044800	AABR07035916.1 Links NCBI RGD Ensembl Show fit
chr1_-_166037424 Show fit	0.05	ENSRNOT00000026115	P2ry2 Links NCBI RGD Ensembl Show fit	purinergic receptor P2Y2
chr15_+_33755478 Show fit	0.04	ENSRNOT00000034073	Thtpa Links NCBI RGD Ensembl Show fit	thiamine triphosphatase
chr5_-_167030441 Show fit	0.03	ENSRNOT00000023543	H6pd Links NCBI RGD Ensembl Show fit	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
chr8_-_111965889 Show fit	0.03	ENSRNOT00000032376	Bfsp2 Links NCBI RGD Ensembl Show fit	beaded filament structural protein 2
chr1_-_209641123 Show fit	0.03	ENSRNOT00000021702	Ebf3 Links NCBI RGD Ensembl Show fit	early B-cell factor 3
chr20_+_5040337 Show fit	0.03	ENSRNOT00000068435	Clic1 Links NCBI RGD Ensembl Show fit	chloride intracellular channel 1
chr9_-_81565416 Show fit	0.03	ENSRNOT00000083582	Aamp Links NCBI RGD Ensembl Show fit	angio-associated, migratory cell protein
chr2_-_26699333 Show fit	0.02	ENSRNOT00000024459	Sv2c Links NCBI RGD Ensembl Show fit	synaptic vesicle glycoprotein 2c
chr16_-_79671719 Show fit	0.02	ENSRNOT00000015908	Myom2 Links NCBI RGD Ensembl Show fit	myomesin 2
chr4_+_25507463 Show fit	0.02	ENSRNOT00000007977	Steap2 Links NCBI RGD Ensembl Show fit	STEAP2 metalloreductase
chr15_+_24254042 Show fit	0.02	ENSRNOT00000092161	Fbxo34 Links NCBI RGD Ensembl Show fit	F-box protein 34
chr15_+_24267323 Show fit	0.02	ENSRNOT00000015778	Fbxo34 Links NCBI RGD Ensembl Show fit	F-box protein 34
chr9_+_60883981 Show fit	0.02	ENSRNOT00000081002	Ccdc150 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 150
chr7_-_144880092 Show fit	0.02	ENSRNOT00000055281	Nfe2 Links NCBI RGD Ensembl Show fit	nuclear factor, erythroid 2
chr18_+_38847632 Show fit	0.02	ENSRNOT00000014916	LOC102554034 Links NCBI RGD Ensembl Show fit	ELMO domain-containing protein 2-like
chr5_+_138354324 Show fit	0.02	ENSRNOT00000066742	Gm17728 Links NCBI RGD Ensembl Show fit	predicted gene, 17728
chr1_-_141893674 Show fit	0.02	ENSRNOT00000019059 ENSRNOT00000085988	Idh2 Links NCBI RGD Ensembl Show fit	isocitrate dehydrogenase (NADP(+)) 2, mitochondrial
chr7_+_11660934 Show fit	0.02	ENSRNOT00000022336	Lmnb2 Links NCBI RGD Ensembl Show fit	lamin B2
chr17_+_89171250 Show fit	0.01	ENSRNOT00000024901	Gad2 Links NCBI RGD Ensembl Show fit	glutamate decarboxylase 2
chr17_-_15566332 Show fit	0.01	ENSRNOT00000093743	Ecm2 Links NCBI RGD Ensembl Show fit	extracellular matrix protein 2
chrX_-_111887906 Show fit	0.01	ENSRNOT00000085118	Tsc22d3 Links NCBI RGD Ensembl Show fit	TSC22 domain family, member 3
chr17_+_81798756 Show fit	0.01	ENSRNOT00000066826	Cacnb2 Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel auxiliary subunit beta 2
chr10_+_88326337 Show fit	0.01	ENSRNOT00000022029 ENSRNOT00000076461	Fkbp10 Links NCBI RGD Ensembl Show fit	FK506 binding protein 10
chr9_+_17728816 Show fit	0.01	ENSRNOT00000065754	Capn11 Links NCBI RGD Ensembl Show fit	calpain 11
chr1_-_222235102 Show fit	0.01	ENSRNOT00000028725	Fkbp2 Links NCBI RGD Ensembl Show fit	FK506 binding protein 2
chr5_-_12526962 Show fit	0.01	ENSRNOT00000092104	St18 Links NCBI RGD Ensembl Show fit	suppression of tumorigenicity 18
chr1_+_177249226 Show fit	0.01	ENSRNOT00000021671	Parva Links NCBI RGD Ensembl Show fit	parvin, alpha
chr1_-_190596431 Show fit	0.01	ENSRNOT00000079335	Pdzd9 Links NCBI RGD Ensembl Show fit	PDZ domain containing 9
chr1_+_99616447 Show fit	0.01	ENSRNOT00000029197	Klk14 Links NCBI RGD Ensembl Show fit	kallikrein related-peptidase 14
chr14_-_21709084 Show fit	0.01	ENSRNOT00000087477	Smr3b Links NCBI RGD Ensembl Show fit	submaxillary gland androgen regulated protein 3B
chr16_+_20740826 Show fit	0.01	ENSRNOT00000038057	Crtc1 Links NCBI RGD Ensembl Show fit	CREB regulated transcription coactivator 1
chrX_+_112020646 Show fit	0.01	ENSRNOT00000079841	Mid2 Links NCBI RGD Ensembl Show fit	midline 2
chr1_+_70260041 Show fit	0.01	ENSRNOT00000020416	Zim1 Links NCBI RGD Ensembl Show fit	zinc finger, imprinted 1
chr4_-_153465203 Show fit	0.01	ENSRNOT00000016776	Bid Links NCBI RGD Ensembl Show fit	BH3 interacting domain death agonist
chr16_-_19366485 Show fit	0.01	ENSRNOT00000077789	Rab8a Links NCBI RGD Ensembl Show fit	RAB8A, member RAS oncogene family
chr8_+_117355943 Show fit	0.01	ENSRNOT00000027318	Dalrd3 Links NCBI RGD Ensembl Show fit	DALR anticodon binding domain containing 3
chr10_+_75149814 Show fit	0.01	ENSRNOT00000011500	Mks1 Links NCBI RGD Ensembl Show fit	Meckel syndrome, type 1
chr6_+_48708368 Show fit	0.01	ENSRNOT00000005905	Myt1l Links NCBI RGD Ensembl Show fit	myelin transcription factor 1-like
chr1_-_53038229 Show fit	0.01	ENSRNOT00000017282	Mpc1 Links NCBI RGD Ensembl Show fit	mitochondrial pyruvate carrier 1
chr1_-_229601032 Show fit	0.01	ENSRNOT00000016690	Cntf Links NCBI RGD Ensembl Show fit	ciliary neurotrophic factor
chr20_+_11863082 Show fit	0.01	ENSRNOT00000001640	Fam207a Links NCBI RGD Ensembl Show fit	family with sequence similarity 207, member A
chr8_+_32165810 Show fit	0.01	ENSRNOT00000007539	Zbtb44 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 44
chr10_-_40381886 Show fit	0.01	ENSRNOT00000050213	LOC100912427 Links NCBI RGD Ensembl Show fit	nuclease-sensitive element-binding protein 1-like
chr5_-_152247332 Show fit	0.01	ENSRNOT00000077165	Lin28a Links NCBI RGD Ensembl Show fit	lin-28 homolog A
chr12_-_50400765 Show fit	0.01	ENSRNOT00000071613	Crybb1 Links NCBI RGD Ensembl Show fit	crystallin, beta B1
chr6_-_41870046 Show fit	0.01	ENSRNOT00000005863	Lpin1 Links NCBI RGD Ensembl Show fit	lipin 1
chr1_-_99135977 Show fit	0.00	ENSRNOT00000056515	Vom2r38 Links NCBI RGD Ensembl Show fit	vomeronasal 2 receptor, 38
chr1_-_73121085 Show fit	0.00	ENSRNOT00000073464	LOC684545 Links NCBI RGD Ensembl Show fit	similar to NACHT, leucine rich repeat and PYD containing 2
chr10_-_18579632 Show fit	0.00	ENSRNOT00000040737	Kcnip1 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel interacting protein 1
chr1_-_199395363 Show fit	0.00	ENSRNOT00000090368 ENSRNOT00000026587	Prss36 Links NCBI RGD Ensembl Show fit	protease, serine, 36
chr11_-_61530567 Show fit	0.00	ENSRNOT00000076277	Naa50 Links NCBI RGD Ensembl Show fit	N(alpha)-acetyltransferase 50, NatE catalytic subunit
chr15_+_5319916 Show fit	0.00	ENSRNOT00000046644	LOC102546495 Links NCBI RGD Ensembl Show fit	disks large homolog 5-like
chr10_-_104624757 Show fit	0.00	ENSRNOT00000087759	Unc13d Links NCBI RGD Ensembl Show fit	unc-13 homolog D
chr14_+_77079402 Show fit	0.00	ENSRNOT00000042200	Slc2a9 Links NCBI RGD Ensembl Show fit	solute carrier family 2 member 9
chr11_+_20474483 Show fit	0.00	ENSRNOT00000082417 ENSRNOT00000002895	Ncam2 Links NCBI RGD Ensembl Show fit	neural cell adhesion molecule 2
chr9_-_75528644 Show fit	0.00	ENSRNOT00000019283	Erbb4 Links NCBI RGD Ensembl Show fit	erb-b2 receptor tyrosine kinase 4
chrX_+_16050780 Show fit	0.00	ENSRNOT00000079054	Clcn5 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 5
chr3_+_112916217 Show fit	0.00	ENSRNOT00000030065	Tmem62 Links NCBI RGD Ensembl Show fit	transmembrane protein 62
chr8_-_77398156 Show fit	0.00	ENSRNOT00000091858 ENSRNOT00000085349 ENSRNOT00000082763	Lipc Links NCBI RGD Ensembl Show fit	lipase C, hepatic type

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:2000851	positive regulation of glucocorticoid secretion(GO:2000851)
0.0	0.1	GO:0072144	glomerular mesangial cell development(GO:0072144)
0.0	0.0	GO:0006772	thiamine metabolic process(GO:0006772) thiamine diphosphate metabolic process(GO:0042357) thiamine-containing compound metabolic process(GO:0042723)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0071553	uridine nucleotide receptor activity(GO:0015065) G-protein coupled pyrimidinergic nucleotide receptor activity(GO:0071553)
0.0	0.1	GO:0004966	galanin receptor activity(GO:0004966)