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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Tfcp2
Z-value: 0.43
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Transcription factors associated with Tfcp2
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Tfcp2 | rn6_v1_chr7_-_142180794_142180794 | -0.52 | 3.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr11_-_36479868 Show fit | 0.38 |
ENSRNOT00000075762
|
non-histone chromosomal protein HMG-14-like |
|
| chr4_-_124113242 Show fit | 0.29 |
ENSRNOT00000015944
|
thyrotropin releasing hormone |
|
| chr11_+_39482408 Show fit | 0.22 |
ENSRNOT00000075126
|
high mobility group nucleosome binding domain 1 |
|
| chr5_+_8459660 Show fit | 0.20 |
ENSRNOT00000007491
|
carboxypeptidase A6 |
|
| chr1_+_168957460 Show fit | 0.17 |
ENSRNOT00000090745
|
hemoglobin subunit beta-2 |
|
| chr3_-_5510908 Show fit | 0.13 |
ENSRNOT00000042289
|
REX4 homolog, 3'-5' exonuclease |
|
| chr11_+_33812662 Show fit | 0.12 |
ENSRNOT00000085961
|
carbonyl reductase [NADPH] 1-like |
|
| chr11_+_33812989 Show fit | 0.12 |
ENSRNOT00000042283
ENSRNOT00000075985 |
carbonyl reductase 1 |
|
| chr1_+_170262156 Show fit | 0.11 |
ENSRNOT00000024077
ENSRNOT00000085395 |
cholecystokinin B receptor |
|
| chr20_+_5050327 Show fit | 0.11 |
ENSRNOT00000083353
|
dimethylarginine dimethylaminohydrolase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Tfcp2
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | GO:0001692 | histamine metabolic process(GO:0001692) |
| 0.1 | 0.2 | GO:0000720 | pyrimidine dimer repair by nucleotide-excision repair(GO:0000720) |
| 0.0 | 0.2 | GO:0006527 | arginine catabolic process(GO:0006527) |
| 0.0 | 0.2 | GO:0015671 | oxygen transport(GO:0015671) |
| 0.0 | 0.1 | GO:0042376 | phylloquinone metabolic process(GO:0042374) phylloquinone catabolic process(GO:0042376) quinone catabolic process(GO:1901662) |
| 0.0 | 0.1 | GO:0016539 | intein-mediated protein splicing(GO:0016539) protein splicing(GO:0030908) |
| 0.0 | 0.1 | GO:1904722 | positive regulation of mRNA cleavage(GO:0031439) positive regulation of endoribonuclease activity(GO:1902380) positive regulation of mRNA endonucleolytic cleavage involved in unfolded protein response(GO:1904722) |
| 0.0 | 0.1 | GO:0031120 | snRNA pseudouridine synthesis(GO:0031120) |
| 0.0 | 0.1 | GO:0090274 | positive regulation of somatostatin secretion(GO:0090274) |
| 0.0 | 0.1 | GO:0019371 | cyclooxygenase pathway(GO:0019371) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0005833 | hemoglobin complex(GO:0005833) |
| 0.0 | 0.1 | GO:0090661 | box H/ACA telomerase RNP complex(GO:0090661) |
| 0.0 | 0.1 | GO:0031415 | NatA complex(GO:0031415) |
| 0.0 | 0.1 | GO:0072588 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
| 0.0 | 0.3 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
| 0.1 | 0.2 | GO:0016403 | dimethylargininase activity(GO:0016403) |
| 0.0 | 0.2 | GO:0005344 | oxygen transporter activity(GO:0005344) |
| 0.0 | 0.1 | GO:0008481 | sphinganine kinase activity(GO:0008481) |
| 0.0 | 0.1 | GO:0031249 | denatured protein binding(GO:0031249) |
| 0.0 | 0.1 | GO:0005146 | leukemia inhibitory factor receptor binding(GO:0005146) |
| 0.0 | 0.1 | GO:0004090 | carbonyl reductase (NADPH) activity(GO:0004090) |
| 0.0 | 0.1 | GO:0034513 | box H/ACA snoRNA binding(GO:0034513) |
| 0.0 | 0.1 | GO:0005113 | patched binding(GO:0005113) |