ISMARA results: Atf5

Project

GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Atf5

Z-value: 0.39

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Transcription factors associated with Atf5

Gene Symbol	Gene ID	Gene Info
Atf5 NCBI RGD Ensembl	ENSRNOG00000020060	activating transcription factor 5

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Atf5	rn6_v1_chr1_-_100810522_100810522	-0.10	8.7e-01	Click!

Activity profile of Atf5 motif

Sorted Z-values of Atf5 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_-_21345805 Show fit	0.39	ENSRNOT00000081296 ENSRNOT00000007802	Car8 NCBI RGD Ensembl Show fit	carbonic anhydrase 8
chr10_-_88551056 Show fit	0.28	ENSRNOT00000032737	Zfp385c NCBI RGD Ensembl Show fit	zinc finger protein 385C
chr5_-_150167077 Show fit	0.21	ENSRNOT00000088493 ENSRNOT00000013761 ENSRNOT00000067349 ENSRNOT00000051097 ENSRNOT00000067189	Epb41 NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1
chr1_-_255815733 Show fit	0.10	ENSRNOT00000047387	Cpeb3 NCBI RGD Ensembl Show fit	cytoplasmic polyadenylation element binding protein 3
chr7_+_79638046 Show fit	0.09	ENSRNOT00000029419	Zfpm2 NCBI RGD Ensembl Show fit	zinc finger protein, multitype 2
chr10_+_84131495 Show fit	0.09	ENSRNOT00000009986	Hoxb8 NCBI RGD Ensembl Show fit	homeo box B8
chr8_+_81766041 Show fit	0.08	ENSRNOT00000032280	Onecut1 NCBI RGD Ensembl Show fit	one cut homeobox 1
chr16_+_27399467 Show fit	0.08	ENSRNOT00000065642	Tll1 NCBI RGD Ensembl Show fit	tolloid-like 1
chrX_-_29648359 Show fit	0.07	ENSRNOT00000086721 ENSRNOT00000006777	Gpm6b NCBI RGD Ensembl Show fit	glycoprotein m6b
chr3_-_11417546 Show fit	0.07	ENSRNOT00000018776	Lcn2 NCBI RGD Ensembl Show fit	lipocalin 2

Showing 1 to 10 of 62 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Atf5

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	GO:0006730	one-carbon metabolic process(GO:0006730)
0.0	0.1	GO:0045900	negative regulation of translational elongation(GO:0045900)
0.0	0.1	GO:0015891	iron chelate transport(GO:0015688) siderophore transport(GO:0015891)
0.0	0.1	GO:2000195	negative regulation of female gonad development(GO:2000195)
0.0	0.1	GO:0019483	beta-alanine biosynthetic process(GO:0019483)
0.0	0.1	GO:0051612	negative regulation of neurotransmitter uptake(GO:0051581) regulation of serotonin uptake(GO:0051611) negative regulation of serotonin uptake(GO:0051612)
0.0	0.1	GO:0003431	growth plate cartilage chondrocyte development(GO:0003431)
0.0	0.1	GO:0099590	neurotransmitter receptor internalization(GO:0099590)
0.0	0.0	GO:0031632	positive regulation of synaptic vesicle fusion to presynaptic membrane(GO:0031632)

Showing 1 to 9 of 9 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	GO:0004089	carbonate dehydratase activity(GO:0004089)
0.0	0.1	GO:0043812	phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)

Showing 1 to 2 of 2 entries