GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_127081978 Show fit	0.14	ENSRNOT00000022945	Tbc1d22a Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 22a
chr18_-_55916220 Show fit	0.12	ENSRNOT00000025934	Synpo Links NCBI RGD Ensembl Show fit	synaptopodin
chr4_+_113935492 Show fit	0.12	ENSRNOT00000035329	LOC103692170 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 142
chr5_+_142875773 Show fit	0.11	ENSRNOT00000082120 ENSRNOT00000056496	Epha10 Links NCBI RGD Ensembl Show fit	EPH receptor A10
chr18_-_57114545 Show fit	0.09	ENSRNOT00000026495	Afap1l1 Links NCBI RGD Ensembl Show fit	actin filament associated protein 1-like 1
chr6_+_119519714 Show fit	0.08	ENSRNOT00000004955	Flrt2 Links NCBI RGD Ensembl Show fit	fibronectin leucine rich transmembrane protein 2
chr13_-_48284408 Show fit	0.07	ENSRNOT00000085967	Srgap2 Links NCBI RGD Ensembl Show fit	SLIT-ROBO Rho GTPase activating protein 2
chr1_+_165382690 Show fit	0.07	ENSRNOT00000023802	C2cd3 Links NCBI RGD Ensembl Show fit	C2 calcium-dependent domain containing 3
chr6_+_26537707 Show fit	0.07	ENSRNOT00000050102	Zfp513 Links NCBI RGD Ensembl Show fit	zinc finger protein 513
chr20_+_46428124 Show fit	0.06	ENSRNOT00000000327	Foxo3 Links NCBI RGD Ensembl Show fit	forkhead box O3
chr17_-_90756048 Show fit	0.05	ENSRNOT00000085669	Ero1b Links NCBI RGD Ensembl Show fit	endoplasmic reticulum oxidoreductase 1 beta
chr3_-_120087136 Show fit	0.05	ENSRNOT00000078994	Kcnip3 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel interacting protein 3
chr10_-_58693754 Show fit	0.05	ENSRNOT00000071764	Pitpnm3 Links NCBI RGD Ensembl Show fit	PITPNM family member 3
chrX_+_19270181 Show fit	0.05	ENSRNOT00000029397	Usp51 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 51
chr8_-_32328819 Show fit	0.05	ENSRNOT00000074457 ENSRNOT00000070818	Aplp2 Links NCBI RGD Ensembl Show fit	amyloid beta precursor like protein 2
chr2_+_262914327 Show fit	0.05	ENSRNOT00000029312	Negr1 Links NCBI RGD Ensembl Show fit	neuronal growth regulator 1
chr11_-_86890390 Show fit	0.04	ENSRNOT00000046183	Trmt2a Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 2 homolog A
chr6_+_147876237 Show fit	0.04	ENSRNOT00000056649	Tmem196 Links NCBI RGD Ensembl Show fit	transmembrane protein 196
chr6_-_22092346 Show fit	0.04	ENSRNOT00000083128 ENSRNOT00000006830	Birc6 Links NCBI RGD Ensembl Show fit	baculoviral IAP repeat-containing 6
chr4_-_125929002 Show fit	0.04	ENSRNOT00000083271	Magi1 Links NCBI RGD Ensembl Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 1
chr2_-_211322719 Show fit	0.04	ENSRNOT00000027493	RGD1310209 Links NCBI RGD Ensembl Show fit	similar to KIAA1324 protein
chr1_-_142164263 Show fit	0.04	ENSRNOT00000016281	Man2a2 Links NCBI RGD Ensembl Show fit	mannosidase, alpha, class 2A, member 2
chr6_-_92527711 Show fit	0.04	ENSRNOT00000007529	Nin Links NCBI RGD Ensembl Show fit	ninein
chr15_+_46784963 Show fit	0.03	ENSRNOT00000015540	Xkr6 Links NCBI RGD Ensembl Show fit	XK related 6
chr15_-_56970365 Show fit	0.03	ENSRNOT00000047192	Lrch1 Links NCBI RGD Ensembl Show fit	leucine rich repeats and calponin homology domain containing 1
chr19_+_54766589 Show fit	0.03	ENSRNOT00000025894	Banp Links NCBI RGD Ensembl Show fit	Btg3 associated nuclear protein
chr3_+_8453609 Show fit	0.03	ENSRNOT00000041921	Odf2 Links NCBI RGD Ensembl Show fit	outer dense fiber of sperm tails 2
chr7_-_12424367 Show fit	0.03	ENSRNOT00000060698	Midn Links NCBI RGD Ensembl Show fit	midnolin
chr18_+_27576129 Show fit	0.03	ENSRNOT00000070930	Kdm3b Links NCBI RGD Ensembl Show fit	lysine demethylase 3B
chr18_-_61788859 Show fit	0.03	ENSRNOT00000034075 ENSRNOT00000034069	Ccbe1 Links NCBI RGD Ensembl Show fit	collagen and calcium binding EGF domains 1
chr15_+_39644851 Show fit	0.03	ENSRNOT00000081373	Rcbtb1 Links NCBI RGD Ensembl Show fit	RCC1 and BTB domain containing protein 1
chr7_-_14189688 Show fit	0.02	ENSRNOT00000037456	Notch3 Links NCBI RGD Ensembl Show fit	notch 3
chr1_+_171820423 Show fit	0.02	ENSRNOT00000047831	Ppfibp2 Links NCBI RGD Ensembl Show fit	PPFIA binding protein 2
chr5_+_9279970 Show fit	0.02	ENSRNOT00000067977	Mybl1 Links NCBI RGD Ensembl Show fit	myeloblastosis oncogene-like 1
chr3_+_113251778 Show fit	0.02	ENSRNOT00000083005	Map1a Links NCBI RGD Ensembl Show fit	microtubule-associated protein 1A
chr10_-_104358253 Show fit	0.02	ENSRNOT00000005942	Caskin2 Links NCBI RGD Ensembl Show fit	cask-interacting protein 2
chr6_-_138249382 Show fit	0.02	ENSRNOT00000085678 ENSRNOT00000006912	Ighm Links NCBI RGD Ensembl Show fit	immunoglobulin heavy constant mu
chr2_+_251863069 Show fit	0.02	ENSRNOT00000036282	Syde2 Links NCBI RGD Ensembl Show fit	synapse defective Rho GTPase homolog 2
chr3_+_103753238 Show fit	0.02	ENSRNOT00000007144	Slc12a6 Links NCBI RGD Ensembl Show fit	solute carrier family 12, member 6
chr1_+_140602542 Show fit	0.02	ENSRNOT00000085570	Isg20 Links NCBI RGD Ensembl Show fit	interferon stimulated exonuclease gene 20
chr8_-_58647933 Show fit	0.02	ENSRNOT00000038830	Tnfaip8l3 Links NCBI RGD Ensembl Show fit	TNF alpha induced protein 8 like 3
chr10_+_43538160 Show fit	0.02	ENSRNOT00000089217	Cnot8 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex, subunit 8
chr1_-_2073896 Show fit	0.02	ENSRNOT00000061999	Tab2 Links NCBI RGD Ensembl Show fit	TGF-beta activated kinase 1/MAP3K7 binding protein 2
chr1_-_192025350 Show fit	0.01	ENSRNOT00000071946	Ears2 Links NCBI RGD Ensembl Show fit	glutamyl-tRNA synthetase 2, mitochondrial
chrX_+_20216587 Show fit	0.01	ENSRNOT00000073114	AABR07037412.2 Links NCBI RGD Ensembl Show fit	FYVE, RhoGEF and PH domain-containing protein 1
chr1_-_188713270 Show fit	0.01	ENSRNOT00000082192 ENSRNOT00000065892	Gprc5b Links NCBI RGD Ensembl Show fit	G protein-coupled receptor, class C, group 5, member B
chr12_-_6956914 Show fit	0.01	ENSRNOT00000072129 ENSRNOT00000001210	Uspl1 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase like 1
chrX_+_14498119 Show fit	0.01	ENSRNOT00000051135	Xk Links NCBI RGD Ensembl Show fit	X-linked Kx blood group
chr1_+_221443896 Show fit	0.01	ENSRNOT00000073942	Tmem262 Links NCBI RGD Ensembl Show fit	transmembrane protein 262
chr12_+_22026075 Show fit	0.01	ENSRNOT00000029041	LOC100910838 Links NCBI RGD Ensembl Show fit	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1-like
chr7_+_91384187 Show fit	0.01	ENSRNOT00000005828	Utp23 Links NCBI RGD Ensembl Show fit	UTP23, small subunit processome component
chr1_+_192025710 Show fit	0.01	ENSRNOT00000077457	Ubfd1 Links NCBI RGD Ensembl Show fit	ubiquitin family domain containing 1
chrX_-_154722220 Show fit	0.01	ENSRNOT00000089743 ENSRNOT00000087893	Fmr1 Links NCBI RGD Ensembl Show fit	fragile X mental retardation 1
chr1_+_44019059 Show fit	0.01	ENSRNOT00000065733 ENSRNOT00000083425	Scaf8 Links NCBI RGD Ensembl Show fit	SR-related CTD-associated factor 8
chr1_+_192025357 Show fit	0.01	ENSRNOT00000025072	Ubfd1 Links NCBI RGD Ensembl Show fit	ubiquitin family domain containing 1
chr2_-_220101791 Show fit	0.01	ENSRNOT00000022905	Plppr5 Links NCBI RGD Ensembl Show fit	phospholipid phosphatase related 5
chr20_+_2194709 Show fit	0.00	ENSRNOT00000001017	Trim15 Links NCBI RGD Ensembl Show fit	tripartite motif containing 15
chr6_+_147876557 Show fit	0.00	ENSRNOT00000080090	Tmem196 Links NCBI RGD Ensembl Show fit	transmembrane protein 196

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0098886	modification of dendritic spine(GO:0098886)
0.0	0.1	GO:0021816	lamellipodium assembly involved in ameboidal cell migration(GO:0003363) extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration(GO:0021816)
0.0	0.1	GO:0021997	neural plate axis specification(GO:0021997)
0.0	0.1	GO:0061343	cell adhesion involved in heart morphogenesis(GO:0061343)
0.0	0.1	GO:0030070	insulin processing(GO:0030070)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0097444	spine apparatus(GO:0097444)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005005	transmembrane-ephrin receptor activity(GO:0005005)