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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Rxra

Z-value: 0.40

Motif logo

Transcription factors associated with Rxra

Gene Symbol Gene ID Gene Info
ENSRNOG00000009446 retinoid X receptor alpha

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Rxrarn6_v1_chr3_+_6211789_6211789-0.138.4e-01Click!

Activity profile of Rxra motif

Sorted Z-values of Rxra motif

Promoter Log-likelihood Transcript Gene Gene Info
chr13_+_91054974 0.20 ENSRNOT00000091089
C-reactive protein
chr3_+_124896618 0.18 ENSRNOT00000028888
CDP-diacylglycerol synthase 2
chr4_+_88832178 0.17 ENSRNOT00000088983
ATP-binding cassette, subfamily G (WHITE), member 2
chr2_+_149899836 0.15 ENSRNOT00000086481
similar to hypothetical protein C130079G13
chr2_-_140618405 0.15 ENSRNOT00000017736
SET domain containing (lysine methyltransferase) 7
chr7_-_82687130 0.15 ENSRNOT00000006791
transmembrane protein 74
chr10_+_55169282 0.14 ENSRNOT00000005423
coiled-coil domain containing 42
chr16_-_32868680 0.12 ENSRNOT00000015974
ENSRNOT00000082392
aminoadipate aminotransferase
chr18_+_45023932 0.11 ENSRNOT00000039379
family with sequence similarity 170, member A
chr3_-_111037425 0.11 ENSRNOT00000085628
protein phosphatase 1, regulatory (inhibitor) subunit 14D
chr8_-_55696601 0.11 ENSRNOT00000016127
RGD1562914
chr17_+_88095830 0.10 ENSRNOT00000045984
threonine synthase-like 1
chr15_+_61069581 0.10 ENSRNOT00000084333
von Willebrand factor A domain containing 8
chr6_-_76535517 0.09 ENSRNOT00000083857
Ral GTPase activating protein catalytic alpha subunit 1
chr18_+_44468784 0.09 ENSRNOT00000031812
Dmx-like 1
chr14_-_92495894 0.09 ENSRNOT00000064483
cordon-bleu WH2 repeat protein
chr15_-_9086282 0.09 ENSRNOT00000008989
thyroid hormone receptor beta
chr1_-_239057732 0.09 ENSRNOT00000024775
guanine deaminase
chr2_-_47281421 0.09 ENSRNOT00000086114
integrin subunit alpha 1
chr7_-_2961873 0.09 ENSRNOT00000067441
ribosomal protein S15, pseudogene 2
chrX_+_14019961 0.09 ENSRNOT00000004785
synaptotagmin-like 5
chr1_+_226573105 0.08 ENSRNOT00000028074
cleavage and polyadenylation specific factor 7
chr12_+_6403940 0.08 ENSRNOT00000083484
beta 3-glucosyltransferase
chr9_+_45901741 0.08 ENSRNOT00000059571
neuronal PAS domain protein 2
chr17_-_88095729 0.08 ENSRNOT00000025140
enkurin, TRPC channel interacting protein
chr4_-_40136061 0.08 ENSRNOT00000009752
base methyltransferase of 25S rRNA 2 homolog
chr4_+_31229913 0.08 ENSRNOT00000077134
ENSRNOT00000087897
sterile alpha motif domain containing 9-like
chr9_-_92530938 0.07 ENSRNOT00000064875
solute carrier family 16, member 14
chr17_+_23661429 0.07 ENSRNOT00000046523
phosphatase and actin regulator 1
chr18_+_68983545 0.07 ENSRNOT00000085317
StAR-related lipid transfer domain containing 6
chrX_-_128268285 0.07 ENSRNOT00000009755
ENSRNOT00000081880
THO complex 2
chr11_-_62451149 0.07 ENSRNOT00000093686
ENSRNOT00000081443
zinc finger and BTB domain containing 20
chr2_+_86914989 0.07 ENSRNOT00000085164
ENSRNOT00000081966
zinc finger protein 457-like
chr8_+_115151627 0.07 ENSRNOT00000064252
abhydrolase domain containing 14b
chr3_-_111037166 0.07 ENSRNOT00000017070
protein phosphatase 1, regulatory (inhibitor) subunit 14D
chr17_+_69634890 0.07 ENSRNOT00000029049
aldo-keto reductase family 1, member C13
chr12_+_19680712 0.07 ENSRNOT00000081310

chr12_-_24537313 0.07 ENSRNOT00000001975
bromodomain adjacent to zinc finger domain, 1B
chr14_+_11988671 0.06 ENSRNOT00000003207
RasGEF domain family, member 1B
chr6_+_78567970 0.06 ENSRNOT00000032743
tetratricopeptide repeat domain 6
chr3_+_100788806 0.06 ENSRNOT00000083289
ENSRNOT00000090445
brain-derived neurotrophic factor
chr2_-_102919567 0.06 ENSRNOT00000072162
ribosomal protein L30-like
chr11_+_84396033 0.06 ENSRNOT00000002316
ATP binding cassette subfamily C member 5
chr3_+_69549673 0.06 ENSRNOT00000043974
zinc finger protein 804A
chr9_-_83253458 0.06 ENSRNOT00000041689
Eph receptor A4
chr13_-_80703615 0.06 ENSRNOT00000004599
flavin containing monooxygenase 4
chr5_-_137238354 0.05 ENSRNOT00000039235
seizure threshold 2 homolog (mouse)
chr7_-_117605141 0.05 ENSRNOT00000035199
F-box and leucine-rich repeat protein 6
chr2_-_226779440 0.05 ENSRNOT00000055669
formin binding protein 1-like
chr2_+_189169877 0.05 ENSRNOT00000028225
Src homology 2 domain containing E
chrX_+_74304292 0.05 ENSRNOT00000057623
LRRGT00193
chr10_+_34975708 0.05 ENSRNOT00000064984
NHP2 ribonucleoprotein
chr1_+_47942800 0.05 ENSRNOT00000079312
Wilms tumor 1 associated protein
chr17_-_56068125 0.05 ENSRNOT00000022462
mitochondrial poly(A) polymerase
chr11_+_27208564 0.05 ENSRNOT00000002158
MAP3K7 C-terminal like
chr2_-_178389608 0.05 ENSRNOT00000013262
electron transfer flavoprotein dehydrogenase
chr8_+_123126667 0.05 ENSRNOT00000015643
oxysterol binding protein-like 10
chr17_+_76306585 0.05 ENSRNOT00000065978
dehydrogenase E1 and transketolase domain containing 1
chr5_+_169274785 0.04 ENSRNOT00000082586
pleckstrin homology and RhoGEF domain containing G5
chr12_-_6078411 0.04 ENSRNOT00000001197
relaxin/insulin-like family peptide receptor 2
chr15_+_39945095 0.04 ENSRNOT00000016826
shisa family member 2
chr6_+_59757397 0.04 ENSRNOT00000047001

chr10_+_3227160 0.04 ENSRNOT00000088075
N-terminal asparagine amidase
chr4_+_2340148 0.04 ENSRNOT00000072890
nucleolar protein with MIF4G domain 1
chr4_+_183896303 0.04 ENSRNOT00000055437
similar to hypothetical protein FLJ10652
chr3_+_161272385 0.04 ENSRNOT00000021052
zinc finger, SWIM-type containing 3
chr5_+_144581427 0.04 ENSRNOT00000015227
claspin
chr8_-_48597867 0.04 ENSRNOT00000077958
NLR family member X1
chr1_+_15620653 0.04 ENSRNOT00000017401
microtubule-associated protein 7
chr20_+_3827086 0.04 ENSRNOT00000081588
retinoid X receptor beta
chr9_+_100932932 0.04 ENSRNOT00000065058
inhibitor of growth family, member 5
chr9_-_13311924 0.04 ENSRNOT00000015584
kinesin family member 6
chr10_-_18443934 0.04 ENSRNOT00000059895
ENSRNOT00000080021
RAN binding protein 17
chr4_+_34282625 0.04 ENSRNOT00000011138
ENSRNOT00000086735
glucocorticoid induced 1
chr1_+_15834779 0.04 ENSRNOT00000079069
ENSRNOT00000083012
BCL2-associated transcription factor 1
chr1_+_257076221 0.04 ENSRNOT00000044895
solute carrier family 35, member G1
chr9_+_81783349 0.04 ENSRNOT00000021548
CCR4-NOT transcription complex subunit 9
chr3_-_52447622 0.04 ENSRNOT00000083552
sodium voltage-gated channel alpha subunit 1
chr2_+_196304492 0.04 ENSRNOT00000028640
LysM domain containing 1
chr1_+_187149453 0.04 ENSRNOT00000082738
xylosyltransferase 1
chr15_+_675085 0.04 ENSRNOT00000091318
potassium calcium-activated channel subfamily M alpha 1
chr1_+_61733805 0.04 ENSRNOT00000086029
similar to Zinc finger protein 208
chr18_+_59096643 0.04 ENSRNOT00000025325
WD repeat domain 7
chrX_+_20351486 0.04 ENSRNOT00000093675
ENSRNOT00000047444
WNK lysine deficient protein kinase 3
chr3_-_45210474 0.04 ENSRNOT00000091777
coiled-coil domain containing 148
chr2_-_199971965 0.04 ENSRNOT00000087026
phosphodiesterase 4D interacting protein
chr5_-_171710312 0.04 ENSRNOT00000076044
ENSRNOT00000071280
ENSRNOT00000072059
ENSRNOT00000077015
PR/SET domain 16
chr8_-_14880644 0.04 ENSRNOT00000015977
FAT atypical cadherin 3
chr16_+_74810938 0.04 ENSRNOT00000058091
NIMA-related kinase 5
chr2_-_89498395 0.04 ENSRNOT00000068507

chr10_-_14299167 0.03 ENSRNOT00000042066
mitogen-activated protein kinase 8 interacting protein 3
chr1_-_31122093 0.03 ENSRNOT00000016712
SOGA family member 3
chr2_+_166403265 0.03 ENSRNOT00000012417
NMD3 ribosome export adaptor
chr1_+_198655742 0.03 ENSRNOT00000023944
myosin light chain, phosphorylatable, fast skeletal muscle
chr14_+_1462358 0.03 ENSRNOT00000077243
colony stimulating factor 2 receptor alpha subunit
chr1_-_71173216 0.03 ENSRNOT00000020523
zinc finger protein 28
chr16_-_22853022 0.03 ENSRNOT00000050775
coiled-coil domain containing 94
chr6_+_44230985 0.03 ENSRNOT00000005858
kinase D-interacting substrate 220
chr1_-_37932084 0.03 ENSRNOT00000022527
zinc finger protein 728-like
chr8_+_99894762 0.03 ENSRNOT00000081768
phospholipid scramblase 4
chr6_+_123034304 0.03 ENSRNOT00000078938
candidate plasticity gene 1
chr11_+_47146308 0.03 ENSRNOT00000002191
centrosomal protein 97
chr9_+_92681078 0.03 ENSRNOT00000034152
SP100 nuclear antigen
chr2_+_166402838 0.03 ENSRNOT00000064244
NMD3 ribosome export adaptor
chr2_-_111793326 0.03 ENSRNOT00000092660
neuroligin 1
chr3_+_176494768 0.03 ENSRNOT00000040270
collagen type XX alpha 1 chain
chrX_+_29562165 0.03 ENSRNOT00000006074
OFD1, centriole and centriolar satellite protein
chr1_-_100231460 0.03 ENSRNOT00000032200
acid phosphatase, testicular
chr6_+_26537707 0.03 ENSRNOT00000050102
zinc finger protein 513
chrX_-_77295426 0.03 ENSRNOT00000090833
TATA-box binding protein associated factor 9b
chr8_+_40009691 0.03 ENSRNOT00000042679
V-set and immunoglobulin domain containing 2
chr10_-_67285617 0.03 ENSRNOT00000019044
UTP6 small subunit processome component
chr8_-_48674748 0.03 ENSRNOT00000014127
hydroxymethylbilane synthase
chr19_+_22450030 0.03 ENSRNOT00000021739
neuropilin and tolloid like 2
chr14_-_83603003 0.03 ENSRNOT00000050005
ENSRNOT00000057673
LIM domain kinase 2
chr10_-_102423084 0.03 ENSRNOT00000065145
sidekick cell adhesion molecule 2
chr12_-_31629881 0.03 ENSRNOT00000001238
piwi-like RNA-mediated gene silencing 1
chr20_+_18833481 0.03 ENSRNOT00000080846
BicC family RNA binding protein 1
chr1_+_221236773 0.03 ENSRNOT00000051979
solute carrier family 25, member 45
chr4_+_114854458 0.03 ENSRNOT00000013312
hypothetical gene supported by BC079424
chr14_-_78377825 0.03 ENSRNOT00000068104

chr1_+_85192174 0.02 ENSRNOT00000026966
p21 (RAC1) activated kinase 4
chr10_+_109852036 0.02 ENSRNOT00000054944
ASPSCR1, UBX domain containing tether for SLC2A4
chr17_+_55065621 0.02 ENSRNOT00000086342
zinc finger protein 438
chr6_-_26792808 0.02 ENSRNOT00000010403
abhydrolase domain containing 1
chr11_-_83882117 0.02 ENSRNOT00000073735
DNA-directed RNA polymerases I, II, and III subunit RPABC3-like
chr1_+_213676954 0.02 ENSRNOT00000050551
NLR family, pyrin domain containing 6
chr6_+_106496992 0.02 ENSRNOT00000086136
ENSRNOT00000058181
regulator of G-protein signaling 6
chr4_+_117215064 0.02 ENSRNOT00000020909
SMYD family member 5
chr1_-_140835151 0.02 ENSRNOT00000032174
hyaluronan and proteoglycan link protein 3
chr7_+_11356118 0.02 ENSRNOT00000041325
ATCAY, caytaxin
chr1_+_86973745 0.02 ENSRNOT00000078156
Ras and Rab interactor-like
chr7_+_140788987 0.02 ENSRNOT00000086611
potassium voltage-gated channel subfamily H member 3
chr8_+_114876146 0.02 ENSRNOT00000075966
WD repeat domain 82
chr14_-_45376127 0.02 ENSRNOT00000059247

chr20_-_45259928 0.02 ENSRNOT00000087226
solute carrier family 16 member 10
chr3_+_171213936 0.02 ENSRNOT00000031586
phosphoenolpyruvate carboxykinase 1
chr1_+_86914137 0.02 ENSRNOT00000027006
F-box protein 17
chr4_+_29978739 0.02 ENSRNOT00000011756
protein phosphatase 1, regulatory subunit 9A
chr20_+_30915213 0.02 ENSRNOT00000000681
perforin 1
chrX_-_1704033 0.02 ENSRNOT00000051956
ubiquitin specific peptidase 11
chr9_+_79659251 0.02 ENSRNOT00000021656
X-ray repair cross complementing 5
chr8_+_2659865 0.02 ENSRNOT00000088553
ENSRNOT00000010243
caspase 12
chrX_+_45637415 0.02 ENSRNOT00000050544
similar to ferritin heavy polypeptide-like 17
chr2_+_27365148 0.02 ENSRNOT00000021549
collagen type IV alpha 3 binding protein
chr16_-_19349080 0.02 ENSRNOT00000038494
hematopoietic SH2 domain containing
chr5_-_2803855 0.02 ENSRNOT00000009490
ribosomal protein S8-like
chr13_+_83721300 0.02 ENSRNOT00000082677
adenylate cyclase 10 (soluble)
chr18_-_11858744 0.02 ENSRNOT00000061417
ENSRNOT00000082891
desmocollin 2
chr8_-_83693472 0.02 ENSRNOT00000015947
family with sequence similarity 83, member B
chr5_+_173660921 0.02 ENSRNOT00000066561
NOC2-like nucleolar associated transcriptional repressor
chr19_+_37330930 0.02 ENSRNOT00000022439
pleckstrin homology and RhoGEF domain containing G4
chr12_+_51937175 0.02 ENSRNOT00000056780
pseudouridylate synthase 1
chr1_+_219144205 0.02 ENSRNOT00000083942
unc-93 homolog B1 (C. elegans)
chr3_+_141068023 0.02 ENSRNOT00000036527
kizuna centrosomal protein
chr20_-_2159631 0.02 ENSRNOT00000061558
tripartite motif-containing 31
chr19_+_49637016 0.01 ENSRNOT00000016880
beta-carotene oxygenase 1
chr11_+_61531571 0.01 ENSRNOT00000093467
ENSRNOT00000002727
ATPase H+ transporting V1 subunit A
chr2_-_90568486 0.01 ENSRNOT00000059380
uncharacterized LOC100910852
chr10_-_88143965 0.01 ENSRNOT00000080167
type I keratin KA11
chr13_-_47440682 0.01 ENSRNOT00000037679
ENSRNOT00000005729
ENSRNOT00000050354
ENSRNOT00000050859
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
chr13_+_83681322 0.01 ENSRNOT00000004206
mitochondrial pyruvate carrier 2
chr10_-_104748003 0.01 ENSRNOT00000042372
ENSRNOT00000046754
acyl-CoA oxidase 1
chr16_-_21348391 0.01 ENSRNOT00000083537
lysophosphatidic acid receptor 2
chr7_-_136853957 0.01 ENSRNOT00000008985
neural EGFL like 2
chr3_-_10371240 0.01 ENSRNOT00000012075
argininosuccinate synthase 1
chr3_+_114129589 0.01 ENSRNOT00000056119
telomere repeat binding bouquet formation protein 2
chr1_+_80954858 0.01 ENSRNOT00000030440
zinc finger protein 112
chr19_-_49510901 0.01 ENSRNOT00000082929
ENSRNOT00000079969
hypothetical protein LOC687399
chr1_-_212633304 0.01 ENSRNOT00000025611
olfactory receptor 286
chr2_-_250862419 0.01 ENSRNOT00000017943
chloride channel accessory 4
chr8_+_127171537 0.01 ENSRNOT00000078625
ENSRNOT00000051290
ENSRNOT00000087753
golgin A4
chr4_+_5644260 0.01 ENSRNOT00000041876
ARP3 actin related protein 3 homolog B
chr9_-_69953182 0.01 ENSRNOT00000015852
NADH dehydrogenase (ubiquinone) Fe-S protein 1
chr15_+_5306459 0.01 ENSRNOT00000092079
CD99 antigen-like protein 2
chr10_+_96639924 0.01 ENSRNOT00000004756
apolipoprotein H
chr10_-_85289777 0.01 ENSRNOT00000055427
ENSRNOT00000014863
G protein-coupled receptor 179
chr14_-_102293677 0.01 ENSRNOT00000008135
Ewing tumor-associated antigen 1
chr8_+_56451240 0.01 ENSRNOT00000085278
mitochondrial ribosomal protein L1-like
chr7_+_12798868 0.01 ENSRNOT00000038553
protease, serine, 57
chr1_+_229066045 0.01 ENSRNOT00000016454
glycine-N-acyltransferase
chr1_+_220243473 0.01 ENSRNOT00000084650
ENSRNOT00000027091
mitochondrial ribosomal protein L11
chr2_+_40554146 0.01 ENSRNOT00000015138
phosphodiesterase 4D
chr1_-_219144610 0.01 ENSRNOT00000023526
NADH:ubiquinone oxidoreductase core subunit S8
chr8_+_39878955 0.01 ENSRNOT00000060300
roundabout homolog 4-like
chr3_+_56056925 0.01 ENSRNOT00000088351
ENSRNOT00000010508
kelch-like family member 23
chr8_-_119265157 0.01 ENSRNOT00000056100
receptor (chemosensory) transporter protein 3
chr1_+_97712177 0.01 ENSRNOT00000027745
similar to RIKEN cDNA 4930433I11 gene
chr8_+_117246376 0.01 ENSRNOT00000074493
coiled-coil domain containing 71
chr5_-_102743417 0.01 ENSRNOT00000067389
basonuclin 2
chr7_+_71004417 0.01 ENSRNOT00000005575
myosin IA
chr17_-_49990982 0.01 ENSRNOT00000018458
ENSRNOT00000080628
M-phase specific PLK1 interacting protein
chr6_-_122239614 0.01 ENSRNOT00000005015
galactosylceramidase
chr18_+_46148849 0.01 ENSRNOT00000026724
proline rich 16
chr14_+_1463359 0.01 ENSRNOT00000070834
colony stimulating factor 2 receptor alpha subunit
chr2_+_218834034 0.01 ENSRNOT00000018367
diphthamide biosynthesis 5
chr7_-_116920507 0.01 ENSRNOT00000048363
maestro heat-like repeat family member 6
chr10_-_56624526 0.01 ENSRNOT00000024973
acyl-CoA dehydrogenase, very long chain
chr16_-_81834945 0.01 ENSRNOT00000037806
coagulation factor VII
chr10_+_11810926 0.01 ENSRNOT00000036205
ENSRNOT00000036189
NLR family, CARD domain containing 3

Network of associatons between targets according to the STRING database.

First level regulatory network of Rxra

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:1904612 response to 2,3,7,8-tetrachlorodibenzodioxine(GO:1904612)
0.0 0.1 GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512)
0.0 0.2 GO:0032929 negative regulation of superoxide anion generation(GO:0032929)
0.0 0.1 GO:2001106 fasciculation of motor neuron axon(GO:0097156) regulation of Rho guanyl-nucleotide exchange factor activity(GO:2001106)
0.0 0.1 GO:0001757 somite specification(GO:0001757)
0.0 0.2 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.0 0.1 GO:0046098 guanine metabolic process(GO:0046098)
0.0 0.1 GO:0008050 female courtship behavior(GO:0008050)
0.0 0.1 GO:0018026 peptidyl-lysine monomethylation(GO:0018026)
0.0 0.0 GO:0060082 eye blink reflex(GO:0060082)
0.0 0.0 GO:2000688 positive regulation of rubidium ion transport(GO:2000682) positive regulation of rubidium ion transmembrane transporter activity(GO:2000688)
0.0 0.1 GO:1904751 positive regulation of protein localization to nucleolus(GO:1904751)
0.0 0.0 GO:0038158 granulocyte colony-stimulating factor signaling pathway(GO:0038158)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:1990357 terminal web(GO:1990357)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.0 0.2 GO:0001849 complement component C1q binding(GO:0001849)
0.0 0.1 GO:0036137 kynurenine-oxoglutarate transaminase activity(GO:0016212) kynurenine aminotransferase activity(GO:0036137)
0.0 0.1 GO:0016433 rRNA (adenine) methyltransferase activity(GO:0016433)
0.0 0.2 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.0 0.1 GO:0098639 collagen binding involved in cell-matrix adhesion(GO:0098639)
0.0 0.0 GO:0032551 UTP binding(GO:0002134) pyrimidine ribonucleoside binding(GO:0032551)
0.0 0.0 GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity(GO:0004591)
0.0 0.0 GO:0051916 granulocyte colony-stimulating factor binding(GO:0051916)
0.0 0.0 GO:0030158 protein xylosyltransferase activity(GO:0030158)
0.0 0.1 GO:0042731 PH domain binding(GO:0042731)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.0 0.2 REACTOME CREATION OF C4 AND C2 ACTIVATORS Genes involved in Creation of C4 and C2 activators
0.0 0.1 REACTOME TRYPTOPHAN CATABOLISM Genes involved in Tryptophan catabolism
0.0 0.1 REACTOME PURINE CATABOLISM Genes involved in Purine catabolism