GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Ptf1a Links NCBI RGD Ensembl	ENSRNOG00000016902	pancreas specific transcription factor, 1a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Ptf1a	rn6_v1_chr17_+_86199623_86199623	0.33	5.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_-_13751271 Show fit	0.08	ENSRNOT00000009931	Slc1a6 Links NCBI RGD Ensembl Show fit	solute carrier family 1 member 6
chr19_-_43911057 Show fit	0.07	ENSRNOT00000026017	Ctrb1 Links NCBI RGD Ensembl Show fit	chymotrypsinogen B1
chr1_-_101198801 Show fit	0.05	ENSRNOT00000037998	Ccdc155 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 155
chr5_-_155204456 Show fit	0.04	ENSRNOT00000089574	Ephb2 Links NCBI RGD Ensembl Show fit	Eph receptor B2
chr20_+_4043741 Show fit	0.04	ENSRNOT00000000525	RT1-Bb Links NCBI RGD Ensembl Show fit	RT1 class II, locus Bb
chr1_-_98046770 Show fit	0.03	ENSRNOT00000056528	Grb2 Links NCBI RGD Ensembl Show fit	growth factor receptor bound protein 2
chr9_+_94928489 Show fit	0.03	ENSRNOT00000087366 ENSRNOT00000085770 ENSRNOT00000024733	Sag Links NCBI RGD Ensembl Show fit	S-antigen visual arrestin
chr16_+_80826681 Show fit	0.03	ENSRNOT00000000123	Coprs Links NCBI RGD Ensembl Show fit	coordinator of PRMT5 and differentiation stimulator
chr7_-_120518653 Show fit	0.03	ENSRNOT00000016362	Baiap2l2 Links NCBI RGD Ensembl Show fit	BAI1-associated protein 2-like 2
chr20_+_13670066 Show fit	0.03	ENSRNOT00000031400	LOC103694874 Links NCBI RGD Ensembl Show fit	stromelysin-3
chr7_+_70807867 Show fit	0.03	ENSRNOT00000010639	Stac3 Links NCBI RGD Ensembl Show fit	SH3 and cysteine rich domain 3
chr10_-_55515885 Show fit	0.02	ENSRNOT00000005667	Odf4 Links NCBI RGD Ensembl Show fit	outer dense fiber of sperm tails 4
chr3_-_123718432 Show fit	0.02	ENSRNOT00000028861	Spef1 Links NCBI RGD Ensembl Show fit	sperm flagellar 1
chr5_+_25349928 Show fit	0.02	ENSRNOT00000020826	Gem Links NCBI RGD Ensembl Show fit	GTP binding protein overexpressed in skeletal muscle
chr6_+_28382962 Show fit	0.02	ENSRNOT00000016976	Pomc Links NCBI RGD Ensembl Show fit	proopiomelanocortin
chr9_+_53546018 Show fit	0.02	ENSRNOT00000016842	Inpp1 Links NCBI RGD Ensembl Show fit	inositol polyphosphate-1-phosphatase
chr18_+_25163561 Show fit	0.02	ENSRNOT00000042287 ENSRNOT00000049898 ENSRNOT00000017573	Bin1 Links NCBI RGD Ensembl Show fit	bridging integrator 1
chr4_+_100166863 Show fit	0.02	ENSRNOT00000014505	Sftpb Links NCBI RGD Ensembl Show fit	surfactant protein B
chr8_+_56451240 Show fit	0.02	ENSRNOT00000085278	LOC100359687 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L1-like
chr1_-_141111400 Show fit	0.02	ENSRNOT00000022962	Rlbp1 Links NCBI RGD Ensembl Show fit	retinaldehyde binding protein 1
chr6_-_26544207 Show fit	0.02	ENSRNOT00000030518	Snx17 Links NCBI RGD Ensembl Show fit	sorting nexin 17
chr17_-_77304530 Show fit	0.02	ENSRNOT00000024362	Phyh Links NCBI RGD Ensembl Show fit	phytanoyl-CoA 2-hydroxylase
chr15_-_47800024 Show fit	0.02	ENSRNOT00000072997 ENSRNOT00000016616	Msra Links NCBI RGD Ensembl Show fit	methionine sulfoxide reductase A
chr19_+_25946979 Show fit	0.02	ENSRNOT00000004027	Gadd45gip1 Links NCBI RGD Ensembl Show fit	GADD45G interacting protein 1
chr1_-_184106200 Show fit	0.02	ENSRNOT00000067609	Cyp2r1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily r, polypeptide 1
chr20_+_5008508 Show fit	0.02	ENSRNOT00000001153	Vwa7 Links NCBI RGD Ensembl Show fit	von Willebrand factor A domain containing 7
chr1_-_98501249 Show fit	0.02	ENSRNOT00000023858	Lim2 Links NCBI RGD Ensembl Show fit	lens intrinsic membrane protein 2
chr14_-_8510138 Show fit	0.02	ENSRNOT00000080758	Arhgap24 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 24
chr3_-_101547478 Show fit	0.02	ENSRNOT00000006203	Fibin Links NCBI RGD Ensembl Show fit	fin bud initiation factor homolog (zebrafish)
chr4_-_156276304 Show fit	0.01	ENSRNOT00000078725	Clec4e Links NCBI RGD Ensembl Show fit	C-type lectin domain family 4, member E
chr20_-_5754773 Show fit	0.01	ENSRNOT00000035977	Ip6k3 Links NCBI RGD Ensembl Show fit	inositol hexakisphosphate kinase 3
chr4_-_162025090 Show fit	0.01	ENSRNOT00000085887 ENSRNOT00000009904	Klrb1a Links NCBI RGD Ensembl Show fit	killer cell lectin-like receptor subfamily B, member 1A
chr7_+_11724962 Show fit	0.01	ENSRNOT00000026551	Lsm7 Links NCBI RGD Ensembl Show fit	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
chr7_-_23843505 Show fit	0.01	ENSRNOT00000006366 ENSRNOT00000077577	Fbxo7 Links NCBI RGD Ensembl Show fit	F-box protein 7
chr11_-_17340373 Show fit	0.01	ENSRNOT00000089762	AABR07033324.1 Links NCBI RGD Ensembl Show fit
chr14_-_18634309 Show fit	0.01	ENSRNOT00000003720	Epgn Links NCBI RGD Ensembl Show fit	epithelial mitogen
chr8_-_22874637 Show fit	0.01	ENSRNOT00000064551 ENSRNOT00000090424	Dock6 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 6
chrX_+_16946207 Show fit	0.01	ENSRNOT00000003981	RGD1563606 Links NCBI RGD Ensembl Show fit	similar to cysteine-rich protein 2
chr8_-_111777602 Show fit	0.01	ENSRNOT00000052317 ENSRNOT00000083855	RGD1310507 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1300017J02
chrX_+_32232142 Show fit	0.01	ENSRNOT00000047354	Ca5b Links NCBI RGD Ensembl Show fit	carbonic anhydrase 5B
chr2_+_58448917 Show fit	0.01	ENSRNOT00000082562	Ranbp3l Links NCBI RGD Ensembl Show fit	RAN binding protein 3-like
chr1_+_77541359 Show fit	0.01	ENSRNOT00000049028	LOC103690015 Links NCBI RGD Ensembl Show fit	40S ribosomal protein S19-like
chr3_+_153402548 Show fit	0.01	ENSRNOT00000091273	Rpn2 Links NCBI RGD Ensembl Show fit	ribophorin II
chr8_-_126495347 Show fit	0.01	ENSRNOT00000013467	Cmc1 Links NCBI RGD Ensembl Show fit	C-x(9)-C motif containing 1
chr16_-_8350067 Show fit	0.01	ENSRNOT00000026932	LOC100362432 Links NCBI RGD Ensembl Show fit	mitochondrial import inner membrane translocase subunit Tim23-like
chr10_+_53466870 Show fit	0.01	ENSRNOT00000057503	Pirt Links NCBI RGD Ensembl Show fit	phosphoinositide-interacting regulator of transient receptor potential channels
chr1_-_189199376 Show fit	0.01	ENSRNOT00000021027	Umod Links NCBI RGD Ensembl Show fit	uromodulin
chr4_+_115713004 Show fit	0.01	ENSRNOT00000064536	Dysf Links NCBI RGD Ensembl Show fit	dysferlin
chr15_-_27981663 Show fit	0.01	ENSRNOT00000064936	Rnase12 Links NCBI RGD Ensembl Show fit	ribonuclease A family member 12
chr4_+_115712850 Show fit	0.01	ENSRNOT00000085765	Dysf Links NCBI RGD Ensembl Show fit	dysferlin
chr3_-_2534663 Show fit	0.01	ENSRNOT00000049297 ENSRNOT00000044246	Grin1 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor NMDA type subunit 1
chr10_+_1622573 Show fit	0.01	ENSRNOT00000040132 ENSRNOT00000090207 ENSRNOT00000089118	AABR07028989.1 Links NCBI RGD Ensembl Show fit
chr5_-_40237591 Show fit	0.01	ENSRNOT00000011393	Fut9 Links NCBI RGD Ensembl Show fit	fucosyltransferase 9
chr11_-_38103290 Show fit	0.01	ENSRNOT00000066413	Tmprss2 Links NCBI RGD Ensembl Show fit	transmembrane protease, serine 2
chr3_-_2534375 Show fit	0.01	ENSRNOT00000037725	Grin1 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor NMDA type subunit 1
chr13_+_96111800 Show fit	0.01	ENSRNOT00000005967	Desi2 Links NCBI RGD Ensembl Show fit	desumoylating isopeptidase 2
chr15_-_41316203 Show fit	0.01	ENSRNOT00000065261	Tnfrsf19 Links NCBI RGD Ensembl Show fit	TNF receptor superfamily member 19
chr16_-_52127591 Show fit	0.01	ENSRNOT00000033652	Triml2 Links NCBI RGD Ensembl Show fit	tripartite motif family-like 2
chr2_+_95320283 Show fit	0.01	ENSRNOT00000015537	Hey1 Links NCBI RGD Ensembl Show fit	hes-related family bHLH transcription factor with YRPW motif 1
chr4_+_34238440 Show fit	0.01	ENSRNOT00000010952	Mios Links NCBI RGD Ensembl Show fit	meiosis regulator for oocyte development
chr18_+_15738809 Show fit	0.01	ENSRNOT00000075444	Mapre2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein, RP/EB family, member 2
chr3_+_67849966 Show fit	0.01	ENSRNOT00000057826	Dusp19 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 19
chr3_+_11254026 Show fit	0.01	ENSRNOT00000015214 ENSRNOT00000082794	Pomt1 Links NCBI RGD Ensembl Show fit	protein-O-mannosyltransferase 1
chr7_-_11982141 Show fit	0.01	ENSRNOT00000024980	Scamp4 Links NCBI RGD Ensembl Show fit	secretory carrier membrane protein 4
chr4_+_72718458 Show fit	0.01	ENSRNOT00000044780	Arhgef5 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 5
chr14_-_86706626 Show fit	0.01	ENSRNOT00000082893	H2afv Links NCBI RGD Ensembl Show fit	H2A histone family, member V
chr18_+_24708115 Show fit	0.01	ENSRNOT00000061054	Lims2 Links NCBI RGD Ensembl Show fit	LIM zinc finger domain containing 2
chr14_+_17228856 Show fit	0.01	ENSRNOT00000003082	Cxcl9 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine ligand 9
chr9_+_119873170 Show fit	0.01	ENSRNOT00000037587	Mettl4 Links NCBI RGD Ensembl Show fit	methyltransferase like 4
chr2_+_193892589 Show fit	0.01	ENSRNOT00000035240	S100a10 Links NCBI RGD Ensembl Show fit	S100 calcium binding protein A10
chr1_-_82580007 Show fit	0.01	ENSRNOT00000078668	Axl Links NCBI RGD Ensembl Show fit	Axl receptor tyrosine kinase
chr18_-_28301863 Show fit	0.01	ENSRNOT00000026895	Sil1 Links NCBI RGD Ensembl Show fit	SIL1 nucleotide exchange factor
chr6_+_38474804 Show fit	0.01	ENSRNOT00000009779	Nbas Links NCBI RGD Ensembl Show fit	neuroblastoma amplified sequence
chr16_-_64716224 Show fit	0.01	ENSRNOT00000071166	Fut10 Links NCBI RGD Ensembl Show fit	fucosyltransferase 10
chr6_-_3254779 Show fit	0.01	ENSRNOT00000061975	Cdkl4 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase-like 4
chr5_-_128333805 Show fit	0.01	ENSRNOT00000037523	Zfyve9 Links NCBI RGD Ensembl Show fit	zinc finger FYVE-type containing 9
chr3_+_160852164 Show fit	0.01	ENSRNOT00000019127	Rbpjl Links NCBI RGD Ensembl Show fit	recombination signal binding protein for immunoglobulin kappa J region-like
chr1_-_47502952 Show fit	0.01	ENSRNOT00000025580	Tagap Links NCBI RGD Ensembl Show fit	T-cell activation RhoGTPase activating protein
chr6_+_109043880 Show fit	0.01	ENSRNOT00000008730	Eif2b2 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 2B subunit beta
chr5_-_164747083 Show fit	0.01	ENSRNOT00000010433	Plod1 Links NCBI RGD Ensembl Show fit	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
chr14_+_78939903 Show fit	0.01	ENSRNOT00000078562 ENSRNOT00000088221	Man2b2 Links NCBI RGD Ensembl Show fit Mrfap1 Links NCBI RGD Ensembl Show fit	mannosidase, alpha, class 2B, member 2 Morf4 family associated protein 1
chr10_+_109904259 Show fit	0.01	ENSRNOT00000073886	Rac3 Links NCBI RGD Ensembl Show fit	ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3)
chr20_-_11556312 Show fit	0.01	ENSRNOT00000091856	RGD1561557 Links NCBI RGD Ensembl Show fit	similar to chromosome 21 open reading frame 29
chr7_-_113228439 Show fit	0.01	ENSRNOT00000034672	Col22a1 Links NCBI RGD Ensembl Show fit	collagen type XXII alpha 1 chain
chr7_-_60294796 Show fit	0.01	ENSRNOT00000007580	Yeats4 Links NCBI RGD Ensembl Show fit	YEATS domain containing 4
chr1_+_226030938 Show fit	0.00	ENSRNOT00000030919	Fth1 Links NCBI RGD Ensembl Show fit	ferritin heavy chain 1
chr3_-_1549189 Show fit	0.00	ENSRNOT00000086447	Pax8 Links NCBI RGD Ensembl Show fit	paired box 8
chr4_-_148437961 Show fit	0.00	ENSRNOT00000082907	Alox5 Links NCBI RGD Ensembl Show fit	arachidonate 5-lipoxygenase
chr4_+_1841955 Show fit	0.00	ENSRNOT00000019271	Olr1096 Links NCBI RGD Ensembl Show fit	olfactory receptor 1096
chr8_+_22035256 Show fit	0.00	ENSRNOT00000028066	Icam1 Links NCBI RGD Ensembl Show fit	intercellular adhesion molecule 1
chr19_-_10581842 Show fit	0.00	ENSRNOT00000021639	Polr2c Links NCBI RGD Ensembl Show fit	RNA polymerase II subunit C
chr16_-_9430743 Show fit	0.00	ENSRNOT00000043811	Wdfy4 Links NCBI RGD Ensembl Show fit	WDFY family member 4
chr3_+_43293185 Show fit	0.00	ENSRNOT00000090323	Gpd2 Links NCBI RGD Ensembl Show fit	glycerol-3-phosphate dehydrogenase 2
chr5_-_109651730 Show fit	0.00	ENSRNOT00000093032	Elavl2 Links NCBI RGD Ensembl Show fit	ELAV like RNA binding protein 2
chr10_+_15485905 Show fit	0.00	ENSRNOT00000027609	Tmem8a Links NCBI RGD Ensembl Show fit	transmembrane protein 8A
chr17_-_62299655 Show fit	0.00	ENSRNOT00000024855	Gjd4 Links NCBI RGD Ensembl Show fit	gap junction protein, delta 4
chr6_+_127946686 Show fit	0.00	ENSRNOT00000082680	LOC500712 Links NCBI RGD Ensembl Show fit	Ab1-233
chr7_+_136037230 Show fit	0.00	ENSRNOT00000071423	AABR07058745.1 Links NCBI RGD Ensembl Show fit
chr20_-_7943575 Show fit	0.00	ENSRNOT00000066897	Tulp1 Links NCBI RGD Ensembl Show fit	tubby like protein 1
chr9_+_111649631 Show fit	0.00	ENSRNOT00000056430	Fer Links NCBI RGD Ensembl Show fit	FER tyrosine kinase
chr5_-_57454839 Show fit	0.00	ENSRNOT00000066683 ENSRNOT00000075842 ENSRNOT00000014211	Nol6 Links NCBI RGD Ensembl Show fit	nucleolar protein 6
chr10_+_103349172 Show fit	0.00	ENSRNOT00000035963	Gpr142 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 142
chr12_-_4474729 Show fit	0.00	ENSRNOT00000001418	Cers4 Links NCBI RGD Ensembl Show fit	ceramide synthase 4
chr19_+_27464937 Show fit	0.00	ENSRNOT00000024020	Vps35 Links NCBI RGD Ensembl Show fit	VPS35 retromer complex component
chr5_+_113725717 Show fit	0.00	ENSRNOT00000032248	Tek Links NCBI RGD Ensembl Show fit	TEK receptor tyrosine kinase
chr9_+_9970209 Show fit	0.00	ENSRNOT00000075215	Dennd1c Links NCBI RGD Ensembl Show fit	DENN/MADD domain containing 1C
chr1_-_282251257 Show fit	0.00	ENSRNOT00000015186	Prdx3 Links NCBI RGD Ensembl Show fit	peroxiredoxin 3
chr9_+_43259709 Show fit	0.00	ENSRNOT00000022487	Cox5b Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 5B
chr1_-_93949187 Show fit	0.00	ENSRNOT00000018956	Zfp536 Links NCBI RGD Ensembl Show fit	zinc finger protein 536
chr6_-_59531574 Show fit	0.00	ENSRNOT00000042029	RGD1560073 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein S10
chr4_+_34237762 Show fit	0.00	ENSRNOT00000084163	Mios Links NCBI RGD Ensembl Show fit	meiosis regulator for oocyte development
chr16_+_71011332 Show fit	0.00	ENSRNOT00000086891 ENSRNOT00000020181	Ash2l Links NCBI RGD Ensembl Show fit	ASH2 like histone lysine methyltransferase complex subunit
chr4_-_30338679 Show fit	0.00	ENSRNOT00000012050	Pon3 Links NCBI RGD Ensembl Show fit	paraoxonase 3
chr7_+_130357643 Show fit	0.00	ENSRNOT00000040769	Klhdc7b Links NCBI RGD Ensembl Show fit	kelch domain containing 7B
chr1_-_255376833 Show fit	0.00	ENSRNOT00000024941	Ppp1r3c Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 3C

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0090172	microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)