GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Mecom Links NCBI RGD Ensembl	ENSRNOG00000012645	MDS1 and EVI1 complex locus

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Mecom	rn6_v1_chr2_-_117454769_117454769	-0.48	4.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_50381244 Show fit	0.11	ENSRNOT00000012385	Cga Links NCBI RGD Ensembl Show fit	glycoprotein hormones, alpha polypeptide
chr1_-_20155960 Show fit	0.07	ENSRNOT00000061389	Samd3 Links NCBI RGD Ensembl Show fit	sterile alpha motif domain containing 3
chr8_+_14060394 Show fit	0.06	ENSRNOT00000014827	Smco4 Links NCBI RGD Ensembl Show fit	single-pass membrane protein with coiled-coil domains 4
chr5_+_173148884 Show fit	0.06	ENSRNOT00000041753	LOC100364191 Links NCBI RGD Ensembl Show fit	hCG1994130-like
chr16_+_75966352 Show fit	0.05	ENSRNOT00000022774	Angpt2 Links NCBI RGD Ensembl Show fit	angiopoietin 2
chr2_-_77784522 Show fit	0.05	ENSRNOT00000030328	LOC310177 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 0610040D20
chr17_+_11101306 Show fit	0.05	ENSRNOT00000030893	Drd1 Links NCBI RGD Ensembl Show fit	dopamine receptor D1
chr8_+_71514281 Show fit	0.05	ENSRNOT00000022256	Ns5atp9 Links NCBI RGD Ensembl Show fit	NS5A (hepatitis C virus) transactivated protein 9
chr16_-_82439441 Show fit	0.05	ENSRNOT00000040315	AABR07026539.1 Links NCBI RGD Ensembl Show fit
chr2_-_256154584 Show fit	0.05	ENSRNOT00000072487	AABR07013776.1 Links NCBI RGD Ensembl Show fit
chr1_+_93242050 Show fit	0.04	ENSRNOT00000013741	RGD1562402 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L27a
chr7_+_12471824 Show fit	0.04	ENSRNOT00000068197	Sbno2 Links NCBI RGD Ensembl Show fit	strawberry notch homolog 2
chr6_+_99356509 Show fit	0.03	ENSRNOT00000008416	Akap5 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 5
chr1_+_42121636 Show fit	0.03	ENSRNOT00000025616	Myct1 Links NCBI RGD Ensembl Show fit	myc target 1
chr10_-_66873948 Show fit	0.03	ENSRNOT00000039261	Evi2a Links NCBI RGD Ensembl Show fit	ecotropic viral integration site 2A
chr9_-_76768770 Show fit	0.03	ENSRNOT00000087779 ENSRNOT00000057849	Ikzf2 Links NCBI RGD Ensembl Show fit	IKAROS family zinc finger 2
chr3_-_148312420 Show fit	0.03	ENSRNOT00000047416 ENSRNOT00000081272	Bcl2l1 Links NCBI RGD Ensembl Show fit	Bcl2-like 1
chr13_-_107831014 Show fit	0.03	ENSRNOT00000003684	Kcnk2 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 2
chr3_-_107760550 Show fit	0.03	ENSRNOT00000077091 ENSRNOT00000051638	Meis2 Links NCBI RGD Ensembl Show fit	Meis homeobox 2
chr11_+_64601029 Show fit	0.02	ENSRNOT00000004138	Arhgap31 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 31
chr3_-_44177689 Show fit	0.02	ENSRNOT00000006387	Cytip Links NCBI RGD Ensembl Show fit	cytohesin 1 interacting protein
chr4_-_131694755 Show fit	0.02	ENSRNOT00000013271	Foxp1 Links NCBI RGD Ensembl Show fit	forkhead box P1
chr5_+_154265097 Show fit	0.02	ENSRNOT00000012342	Cnr2 Links NCBI RGD Ensembl Show fit	cannabinoid receptor 2
chr9_-_26932201 Show fit	0.02	ENSRNOT00000017081	Mcm3 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 3
chr12_+_41636994 Show fit	0.01	ENSRNOT00000001882	Sdsl Links NCBI RGD Ensembl Show fit	serine dehydratase-like
chr14_+_63095720 Show fit	0.01	ENSRNOT00000006071	Ppargc1a Links NCBI RGD Ensembl Show fit	PPARG coactivator 1 alpha
chr10_+_57251253 Show fit	0.01	ENSRNOT00000043171	LOC108348287 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L36a
chr1_-_167765552 Show fit	0.01	ENSRNOT00000024954	Bcl2l1-ps1 Links NCBI RGD Ensembl Show fit	Bcl2-like 1, pseudogene 1
chr11_+_44877859 Show fit	0.01	ENSRNOT00000060838	Col8a1 Links NCBI RGD Ensembl Show fit	collagen type VIII alpha 1 chain
chr2_-_196582997 Show fit	0.01	ENSRNOT00000081672	AABR07012475.1 Links NCBI RGD Ensembl Show fit
chr20_+_1787174 Show fit	0.01	ENSRNOT00000072824 ENSRNOT00000041883	Olr1738 Links NCBI RGD Ensembl Show fit	olfactory receptor 1738
chr5_+_69851171 Show fit	0.01	ENSRNOT00000047780	AABR07048271.1 Links NCBI RGD Ensembl Show fit
chr1_-_93949187 Show fit	0.01	ENSRNOT00000018956	Zfp536 Links NCBI RGD Ensembl Show fit	zinc finger protein 536
chr1_+_128924966 Show fit	0.01	ENSRNOT00000019267	Igf1r Links NCBI RGD Ensembl Show fit	insulin-like growth factor 1 receptor
chr2_-_3124543 Show fit	0.01	ENSRNOT00000036547	Fam81b Links NCBI RGD Ensembl Show fit	family with sequence similarity 81, member B
chr4_-_58250798 Show fit	0.01	ENSRNOT00000048436	Klf14 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 14
chr13_+_89826254 Show fit	0.01	ENSRNOT00000006141	F11r Links NCBI RGD Ensembl Show fit	F11 receptor
chr2_-_187786700 Show fit	0.01	ENSRNOT00000092257 ENSRNOT00000092612 ENSRNOT00000068360	Slc25a44 Links NCBI RGD Ensembl Show fit	solute carrier family 25, member 44
chr19_+_38846201 Show fit	0.01	ENSRNOT00000030768 ENSRNOT00000063977	Tango6 Links NCBI RGD Ensembl Show fit	transport and golgi organization 6 homolog
chr15_-_27726646 Show fit	0.01	ENSRNOT00000082139	Ccnb1ip1 Links NCBI RGD Ensembl Show fit	cyclin B1 interacting protein 1
chr8_+_113603533 Show fit	0.01	ENSRNOT00000017280	Mrpl3 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L3
chrX_+_21696772 Show fit	0.01	ENSRNOT00000043559	Hsd17b10 Links NCBI RGD Ensembl Show fit	hydroxysteroid (17-beta) dehydrogenase 10
chr4_+_142780987 Show fit	0.01	ENSRNOT00000056570	Grm7 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 7
chr3_-_4341771 Show fit	0.00	ENSRNOT00000034694	LOC684988 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein S13
chr11_+_60383431 Show fit	0.00	ENSRNOT00000093295	Cd200 Links NCBI RGD Ensembl Show fit	Cd200 molecule
chr13_-_35048444 Show fit	0.00	ENSRNOT00000009963	Gli2 Links NCBI RGD Ensembl Show fit	GLI family zinc finger 2
chr18_-_5314511 Show fit	0.00	ENSRNOT00000022637 ENSRNOT00000079682	Zfp521 Links NCBI RGD Ensembl Show fit	zinc finger protein 521
chr19_-_38344845 Show fit	0.00	ENSRNOT00000072666	AABR07043748.1 Links NCBI RGD Ensembl Show fit
chr10_+_34519790 Show fit	0.00	ENSRNOT00000052360	Mgat1 Links NCBI RGD Ensembl Show fit	mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
chr12_-_12330929 Show fit	0.00	ENSRNOT00000001336	Bri3 Links NCBI RGD Ensembl Show fit	brain protein I3
chr4_+_52147641 Show fit	0.00	ENSRNOT00000009458	Hyal4 Links NCBI RGD Ensembl Show fit	hyaluronoglucosaminidase 4
chr5_-_77408323 Show fit	0.00	ENSRNOT00000046857 ENSRNOT00000046760	LOC259245 Links NCBI RGD Ensembl Show fit Mup4 Links NCBI RGD Ensembl Show fit	alpha-2u globulin PGCL5 major urinary protein 4
chr17_+_15852548 Show fit	0.00	ENSRNOT00000022203	Card19 Links NCBI RGD Ensembl Show fit	caspase recruitment domain family, member 19
chr3_+_260653 Show fit	0.00	ENSRNOT00000006710	AABR07051190.1 Links NCBI RGD Ensembl Show fit
chr8_-_109560747 Show fit	0.00	ENSRNOT00000087334	Ppp2r3a Links NCBI RGD Ensembl Show fit	protein phosphatase 2, regulatory subunit B'', alpha
chr7_-_124172979 Show fit	0.00	ENSRNOT00000074960	Arfgap3 Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor GTPase activating protein 3
chr7_+_97559841 Show fit	0.00	ENSRNOT00000007326	Zhx2 Links NCBI RGD Ensembl Show fit	zinc fingers and homeoboxes 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0048014	Tie signaling pathway(GO:0048014)
0.0	0.1	GO:0031161	phosphatidylinositol catabolic process(GO:0031161)
0.0	0.0	GO:0071348	cellular response to interleukin-11(GO:0071348)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0001588	dopamine neurotransmitter receptor activity, coupled via Gs(GO:0001588)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME GLYCOPROTEIN HORMONES	Genes involved in Glycoprotein hormones