GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nkx2-1 Links NCBI RGD Ensembl	ENSRNOG00000008644	NK2 homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nkx2-1	rn6_v1_chr6_-_77421286_77421286	0.86	6.3e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_28654733 Show fit	0.62	ENSRNOT00000006174	Pmch Links NCBI RGD Ensembl Show fit	pro-melanin-concentrating hormone
chr10_-_90307658 Show fit	0.25	ENSRNOT00000092102	Slc4a1 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 1
chrX_+_136460215 Show fit	0.19	ENSRNOT00000093538	Arhgap36 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 36
chr1_+_279798187 Show fit	0.15	ENSRNOT00000024065	Pnlip Links NCBI RGD Ensembl Show fit	pancreatic lipase
chr10_+_40247436 Show fit	0.14	ENSRNOT00000079830	Gpx3 Links NCBI RGD Ensembl Show fit	glutathione peroxidase 3
chr1_+_243589607 Show fit	0.13	ENSRNOT00000021792	Dmrt3 Links NCBI RGD Ensembl Show fit	doublesex and mab-3 related transcription factor 3
chr17_-_43640387 Show fit	0.12	ENSRNOT00000087731	Hist1h1c Links NCBI RGD Ensembl Show fit	histone cluster 1 H1 family member c
chr15_+_10120206 Show fit	0.11	ENSRNOT00000033048	Rarb Links NCBI RGD Ensembl Show fit	retinoic acid receptor, beta
chr9_+_82647071 Show fit	0.11	ENSRNOT00000027135	Asic4 Links NCBI RGD Ensembl Show fit	acid sensing ion channel subunit family member 4
chr5_-_127273656 Show fit	0.10	ENSRNOT00000057341	Dmrtb1 Links NCBI RGD Ensembl Show fit	DMRT-like family B with proline-rich C-terminal, 1
chr15_-_34198921 Show fit	0.09	ENSRNOT00000024991	Nrl Links NCBI RGD Ensembl Show fit	neural retina leucine zipper
chr1_+_33910912 Show fit	0.09	ENSRNOT00000044690	Irx1 Links NCBI RGD Ensembl Show fit	iroquois homeobox 1
chr2_+_202200797 Show fit	0.08	ENSRNOT00000042263 ENSRNOT00000071938	Spag17 Links NCBI RGD Ensembl Show fit	sperm associated antigen 17
chr5_-_145423172 Show fit	0.08	ENSRNOT00000081919	Gjb5 Links NCBI RGD Ensembl Show fit	gap junction protein, beta 5
chr1_+_86949413 Show fit	0.08	ENSRNOT00000064153	Sirt2 Links NCBI RGD Ensembl Show fit	sirtuin 2
chr1_+_216237697 Show fit	0.05	ENSRNOT00000027760	Cd81 Links NCBI RGD Ensembl Show fit	Cd81 molecule
chr3_-_168018410 Show fit	0.04	ENSRNOT00000087579	Bcas1 Links NCBI RGD Ensembl Show fit	breast carcinoma amplified sequence 1
chr10_-_12990405 Show fit	0.04	ENSRNOT00000078647	Thoc6 Links NCBI RGD Ensembl Show fit	THO complex 6
chr1_-_233140237 Show fit	0.04	ENSRNOT00000083372	Psat1 Links NCBI RGD Ensembl Show fit	phosphoserine aminotransferase 1
chr6_-_145777767 Show fit	0.04	ENSRNOT00000046799	Rpl32 Links NCBI RGD Ensembl Show fit	ribosomal protein L32
chr12_+_11814071 Show fit	0.04	ENSRNOT00000039149	Tmem130 Links NCBI RGD Ensembl Show fit	transmembrane protein 130
chr6_-_49851677 Show fit	0.04	ENSRNOT00000007287 ENSRNOT00000077442	Acp1 Links NCBI RGD Ensembl Show fit	acid phosphatase 1, soluble
chr6_-_136145837 Show fit	0.04	ENSRNOT00000015122	Ckb Links NCBI RGD Ensembl Show fit	creatine kinase B
chr10_-_84789832 Show fit	0.03	ENSRNOT00000071719	Cdk5rap3 Links NCBI RGD Ensembl Show fit	CDK5 regulatory subunit associated protein 3
chr13_-_82005741 Show fit	0.03	ENSRNOT00000076404	Mettl11b Links NCBI RGD Ensembl Show fit	methyltransferase like 11B
chr12_+_25305823 Show fit	0.03	ENSRNOT00000002010	Gtf2ird1 Links NCBI RGD Ensembl Show fit	GTF2I repeat domain containing 1
chr7_+_141355994 Show fit	0.02	ENSRNOT00000081195	Smarcd1 Links NCBI RGD Ensembl Show fit	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
chr10_-_65820538 Show fit	0.02	ENSRNOT00000011808	Tmem97 Links NCBI RGD Ensembl Show fit	transmembrane protein 97
chr6_+_128973956 Show fit	0.02	ENSRNOT00000075399	Fam181a Links NCBI RGD Ensembl Show fit	family with sequence similarity 181, member A
chr11_-_78456501 Show fit	0.02	ENSRNOT00000036193	Tp63 Links NCBI RGD Ensembl Show fit	tumor protein p63
chr12_-_13462038 Show fit	0.02	ENSRNOT00000043110	LOC100360439 Links NCBI RGD Ensembl Show fit	ribosomal protein L36-like
chr7_-_55604403 Show fit	0.02	ENSRNOT00000088732	Atxn7l3b Links NCBI RGD Ensembl Show fit	ataxin 7-like 3B
chr1_+_170383682 Show fit	0.02	ENSRNOT00000024224	Smpd1 Links NCBI RGD Ensembl Show fit	sphingomyelin phosphodiesterase 1
chr1_-_141470380 Show fit	0.02	ENSRNOT00000065759	Plin1 Links NCBI RGD Ensembl Show fit	perilipin 1
chr1_-_227441442 Show fit	0.02	ENSRNOT00000028433	Ms4a1 Links NCBI RGD Ensembl Show fit	membrane spanning 4-domains A1
chr7_+_116745061 Show fit	0.02	ENSRNOT00000076174	Rhpn1 Links NCBI RGD Ensembl Show fit	rhophilin, Rho GTPase binding protein 1
chr5_-_22769907 Show fit	0.02	ENSRNOT00000047805 ENSRNOT00000076167 ENSRNOT00000076507 ENSRNOT00000076113 ENSRNOT00000083779	Asph Links NCBI RGD Ensembl Show fit	aspartate-beta-hydroxylase
chr11_-_78456200 Show fit	0.02	ENSRNOT00000067251 ENSRNOT00000036179	Tp63 Links NCBI RGD Ensembl Show fit	tumor protein p63
chr7_-_11406771 Show fit	0.02	ENSRNOT00000047450	Eef2 Links NCBI RGD Ensembl Show fit	eukaryotic translation elongation factor 2
chr13_+_52887649 Show fit	0.01	ENSRNOT00000048033	Ascl5 Links NCBI RGD Ensembl Show fit	achaete-scute family bHLH transcription factor 5
chr15_-_51386190 Show fit	0.01	ENSRNOT00000022706	R3hcc1 Links NCBI RGD Ensembl Show fit	R3H domain and coiled-coil containing 1
chr7_+_107467260 Show fit	0.01	ENSRNOT00000009240 ENSRNOT00000077382	Tg Links NCBI RGD Ensembl Show fit	thyroglobulin
chr2_-_250232295 Show fit	0.01	ENSRNOT00000082132	Lmo4 Links NCBI RGD Ensembl Show fit	LIM domain only 4
chr12_+_41486076 Show fit	0.01	ENSRNOT00000057242	Rita1 Links NCBI RGD Ensembl Show fit	RBPJ interacting and tubulin associated 1
chr6_+_101923785 Show fit	0.01	ENSRNOT00000012005	Mpp5 Links NCBI RGD Ensembl Show fit	membrane palmitoylated protein 5
chr10_-_90096096 Show fit	0.01	ENSRNOT00000081539	Tmem101 Links NCBI RGD Ensembl Show fit	transmembrane protein 101
chr9_+_10061978 Show fit	0.01	ENSRNOT00000075180	Acer1 Links NCBI RGD Ensembl Show fit	alkaline ceramidase 1
chr9_+_81427730 Show fit	0.01	ENSRNOT00000019109 ENSRNOT00000081711	Cxcr2 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine receptor 2
chr6_+_101924000 Show fit	0.01	ENSRNOT00000092157	Mpp5 Links NCBI RGD Ensembl Show fit	membrane palmitoylated protein 5
chr10_+_89069256 Show fit	0.01	ENSRNOT00000008576	Tubg2 Links NCBI RGD Ensembl Show fit	tubulin, gamma 2
chr2_+_188844073 Show fit	0.01	ENSRNOT00000028117	Kcnn3 Links NCBI RGD Ensembl Show fit	potassium calcium-activated channel subfamily N member 3
chr16_-_2227258 Show fit	0.01	ENSRNOT00000089377 ENSRNOT00000067464	Slmap Links NCBI RGD Ensembl Show fit	sarcolemma associated protein
chrX_-_123600890 Show fit	0.00	ENSRNOT00000067942	Sept6 Links NCBI RGD Ensembl Show fit	septin 6
chr4_-_70934295 Show fit	0.00	ENSRNOT00000020616	Trpv6 Links NCBI RGD Ensembl Show fit	transient receptor potential cation channel, subfamily V, member 6
chr4_+_100166863 Show fit	0.00	ENSRNOT00000014505	Sftpb Links NCBI RGD Ensembl Show fit	surfactant protein B
chr1_-_197590277 Show fit	0.00	ENSRNOT00000022502 ENSRNOT00000043433	Xpo6 Links NCBI RGD Ensembl Show fit	exportin 6
chr10_+_11240138 Show fit	0.00	ENSRNOT00000048687	Srl Links NCBI RGD Ensembl Show fit	sarcalumenin

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.6	GO:0032227	negative regulation of synaptic transmission, dopaminergic(GO:0032227)
0.1	0.3	GO:0010037	response to carbon dioxide(GO:0010037)
0.0	0.1	GO:0007468	regulation of rhodopsin gene expression(GO:0007468)
0.0	0.1	GO:2000777	positive regulation of oocyte maturation(GO:1900195) positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia(GO:2000777)
0.0	0.1	GO:0072086	specification of loop of Henle identity(GO:0072086) pattern specification involved in metanephros development(GO:0072268)
0.0	0.1	GO:1904158	axonemal central apparatus assembly(GO:1904158)
0.0	0.1	GO:0002238	response to molecule of fungal origin(GO:0002238)
0.0	0.1	GO:1904350	regulation of protein catabolic process in the vacuole(GO:1904350)
0.0	0.1	GO:0060708	spongiotrophoblast differentiation(GO:0060708)
0.0	0.2	GO:0061365	positive regulation of triglyceride lipase activity(GO:0061365)
0.0	0.1	GO:0016584	nucleosome positioning(GO:0016584)
0.0	0.1	GO:0003406	retinal pigment epithelium development(GO:0003406)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1990716	axonemal central apparatus(GO:1990716)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0042903	tubulin deacetylase activity(GO:0042903)
0.0	0.1	GO:0008430	selenium binding(GO:0008430)
0.0	0.6	GO:0071855	neuropeptide receptor binding(GO:0071855)
0.0	0.3	GO:0015106	bicarbonate transmembrane transporter activity(GO:0015106)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION	Genes involved in Apoptosis induced DNA fragmentation