GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxb5 Links NCBI RGD Ensembl	ENSRNOG00000008010	homeo box B5

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Hoxb5	rn6_v1_chr10_+_84152152_84152152	0.39	5.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr14_-_6679878 Show fit	0.58	ENSRNOT00000075989 ENSRNOT00000067875	Spp1 Links NCBI RGD Ensembl Show fit	secreted phosphoprotein 1
chr2_+_164549455 Show fit	0.22	ENSRNOT00000017151	Mlf1 Links NCBI RGD Ensembl Show fit	myeloid leukemia factor 1
chr20_+_5067330 Show fit	0.15	ENSRNOT00000037482	Ly6g6e Links NCBI RGD Ensembl Show fit	lymphocyte antigen 6 complex, locus G6E
chr5_-_38923095 Show fit	0.13	ENSRNOT00000009146	AABR07047593.1 Links NCBI RGD Ensembl Show fit
chr12_-_38782010 Show fit	0.12	ENSRNOT00000001813	Wdr66 Links NCBI RGD Ensembl Show fit	WD repeat domain 66
chr4_+_7173961 Show fit	0.11	ENSRNOT00000017854	Gbx1 Links NCBI RGD Ensembl Show fit	gastrulation brain homeobox 1
chr10_-_13115294 Show fit	0.11	ENSRNOT00000005899	NEWGENE_6497122 Links NCBI RGD Ensembl Show fit	FLYWCH family member 2
chr12_+_2170630 Show fit	0.10	ENSRNOT00000071928	Pet100 Links NCBI RGD Ensembl Show fit	PET100 homolog
chr10_-_83898527 Show fit	0.10	ENSRNOT00000009815	Atp5g1 Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
chr2_+_187740531 Show fit	0.10	ENSRNOT00000092653	Paqr6 Links NCBI RGD Ensembl Show fit	progestin and adipoQ receptor family member 6
chr18_+_25163561 Show fit	0.10	ENSRNOT00000042287 ENSRNOT00000049898 ENSRNOT00000017573	Bin1 Links NCBI RGD Ensembl Show fit	bridging integrator 1
chr1_-_107385257 Show fit	0.09	ENSRNOT00000074296	Ccdc179 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 179
chr11_-_74866451 Show fit	0.08	ENSRNOT00000002330	Il13ra1 Links NCBI RGD Ensembl Show fit	interleukin 13 receptor subunit alpha 1
chrX_+_15049462 Show fit	0.08	ENSRNOT00000007015	Ebp Links NCBI RGD Ensembl Show fit	emopamil binding protein (sterol isomerase)
chr11_+_87374690 Show fit	0.08	ENSRNOT00000086117	Aifm3 Links NCBI RGD Ensembl Show fit	apoptosis inducing factor, mitochondria associated 3
chr9_+_9842585 Show fit	0.08	ENSRNOT00000070806	Cd70 Links NCBI RGD Ensembl Show fit	Cd70 molecule
chr2_+_174203693 Show fit	0.08	ENSRNOT00000073540	LOC108350036 Links NCBI RGD Ensembl Show fit	uncharacterized LOC108350036
chr3_-_176465162 Show fit	0.08	ENSRNOT00000048807	Nkain4 Links NCBI RGD Ensembl Show fit	Sodium/potassium transporting ATPase interacting 4
chr1_+_216191886 Show fit	0.07	ENSRNOT00000054863	Tspan32 Links NCBI RGD Ensembl Show fit	tetraspanin 32
chr13_-_109997092 Show fit	0.07	ENSRNOT00000005190	Nenf Links NCBI RGD Ensembl Show fit	neudesin neurotrophic factor
chr13_-_99101208 Show fit	0.07	ENSRNOT00000004329	H3f3a Links NCBI RGD Ensembl Show fit	H3 histone family member 3A
chr11_+_70056624 Show fit	0.07	ENSRNOT00000002447	AC133403.1 Links NCBI RGD Ensembl Show fit
chr17_+_53956203 Show fit	0.07	ENSRNOT00000022483	Ggps1 Links NCBI RGD Ensembl Show fit	geranylgeranyl diphosphate synthase 1
chr5_-_126221916 Show fit	0.07	ENSRNOT00000052130	Lexm Links NCBI RGD Ensembl Show fit	lymphocyte expansion molecule
chr1_+_94718402 Show fit	0.07	ENSRNOT00000046035	Uqcrb Links NCBI RGD Ensembl Show fit	ubiquinol-cytochrome c reductase binding protein
chr3_-_102826379 Show fit	0.06	ENSRNOT00000073423	Olr769 Links NCBI RGD Ensembl Show fit	olfactory receptor 769
chr10_-_48038647 Show fit	0.06	ENSRNOT00000078448	Prpsap2 Links NCBI RGD Ensembl Show fit	phosphoribosyl pyrophosphate synthetase-associated protein 2
chrX_-_14220662 Show fit	0.06	ENSRNOT00000045753	Srpx Links NCBI RGD Ensembl Show fit	sushi-repeat-containing protein, X-linked
chr9_-_16612136 Show fit	0.06	ENSRNOT00000023495	Mea1 Links NCBI RGD Ensembl Show fit	male-enhanced antigen 1
chr16_+_21275311 Show fit	0.06	ENSRNOT00000027980	LOC100911483 Links NCBI RGD Ensembl Show fit	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like
chr17_+_23116661 Show fit	0.06	ENSRNOT00000067374	Nedd9 Links NCBI RGD Ensembl Show fit	neural precursor cell expressed, developmentally down-regulated 9
chr14_-_60964324 Show fit	0.06	ENSRNOT00000005155	Sod3 Links NCBI RGD Ensembl Show fit	superoxide dismutase 3, extracellular
chr1_+_100939740 Show fit	0.06	ENSRNOT00000049584	Tsks Links NCBI RGD Ensembl Show fit	testis-specific serine kinase substrate
chr5_-_155258392 Show fit	0.06	ENSRNOT00000017065	C1qc Links NCBI RGD Ensembl Show fit	complement C1q C chain
chr1_-_48825364 Show fit	0.05	ENSRNOT00000024213	Agpat4 Links NCBI RGD Ensembl Show fit	1-acylglycerol-3-phosphate O-acyltransferase 4
chr14_-_106393670 Show fit	0.05	ENSRNOT00000011429	Mdh1 Links NCBI RGD Ensembl Show fit	malate dehydrogenase 1
chr6_-_127653124 Show fit	0.05	ENSRNOT00000047324	Serpina11 Links NCBI RGD Ensembl Show fit	serpin family A member 11
chr7_-_29233392 Show fit	0.05	ENSRNOT00000064241	Spic Links NCBI RGD Ensembl Show fit	Spi-C transcription factor
chr12_+_41463922 Show fit	0.05	ENSRNOT00000089378	Cfap73 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 73
chr9_-_15410943 Show fit	0.05	ENSRNOT00000074217	Ccnd3 Links NCBI RGD Ensembl Show fit	cyclin D3
chr3_+_95233874 Show fit	0.04	ENSRNOT00000079743	LOC691083 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691083
chrX_+_28593405 Show fit	0.04	ENSRNOT00000071708	Tmsb4x Links NCBI RGD Ensembl Show fit	thymosin beta 4, X-linked
chr1_+_101012822 Show fit	0.04	ENSRNOT00000027809	Rras Links NCBI RGD Ensembl Show fit	related RAS viral (r-ras) oncogene homolog
chr6_-_102372611 Show fit	0.04	ENSRNOT00000085927	Rdh11 Links NCBI RGD Ensembl Show fit	retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
chr15_-_12889102 Show fit	0.04	ENSRNOT00000061214 ENSRNOT00000084687	RGD1306063 Links NCBI RGD Ensembl Show fit	similar to HT021
chr18_-_52017734 Show fit	0.04	ENSRNOT00000081020	March3 Links NCBI RGD Ensembl Show fit	membrane associated ring-CH-type finger 3
chr3_-_15376767 Show fit	0.04	ENSRNOT00000044885	Ndufa8 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit A8
chr20_+_1749716 Show fit	0.03	ENSRNOT00000048856	Olr1735 Links NCBI RGD Ensembl Show fit	olfactory receptor 1735
chr16_-_2048292 Show fit	0.03	ENSRNOT00000061883	Zcchc24 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 24
chrX_-_1718637 Show fit	0.03	ENSRNOT00000064309	Cdk16 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 16
chr16_+_81089292 Show fit	0.03	ENSRNOT00000087192 ENSRNOT00000026150	Tfdp1 Links NCBI RGD Ensembl Show fit	transcription factor Dp-1
chrM_+_5323 Show fit	0.03	ENSRNOT00000050156	Mt-co1 Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome c oxidase 1
chr2_-_178612470 Show fit	0.03	ENSRNOT00000013499	Tmem144 Links NCBI RGD Ensembl Show fit	transmembrane protein 144
chr1_+_227892956 Show fit	0.03	ENSRNOT00000028483	AABR07006278.1 Links NCBI RGD Ensembl Show fit
chr8_+_85355766 Show fit	0.03	ENSRNOT00000010583	Gcm1 Links NCBI RGD Ensembl Show fit	glial cells missing homolog 1
chr1_+_89202527 Show fit	0.03	ENSRNOT00000028526	Sbsn Links NCBI RGD Ensembl Show fit	suprabasin
chr7_-_29282039 Show fit	0.03	ENSRNOT00000067777	RGD1561102 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein S12
chr6_+_135866739 Show fit	0.03	ENSRNOT00000013460	Exoc3l4 Links NCBI RGD Ensembl Show fit	exocyst complex component 3-like 4
chr20_+_10123651 Show fit	0.03	ENSRNOT00000001559	Pde9a Links NCBI RGD Ensembl Show fit	phosphodiesterase 9A
chr2_-_27287605 Show fit	0.03	ENSRNOT00000034041	Ankdd1b Links NCBI RGD Ensembl Show fit	ankyrin repeat and death domain containing 1B
chrX_+_124894466 Show fit	0.03	ENSRNOT00000080894	Mcts1 Links NCBI RGD Ensembl Show fit	MCTS1, re-initiation and release factor
chr19_+_45946236 Show fit	0.02	ENSRNOT00000045250	Syce1l Links NCBI RGD Ensembl Show fit	synaptonemal complex central element protein 1-like
chr8_-_79715284 Show fit	0.02	ENSRNOT00000088562	Pigb Links NCBI RGD Ensembl Show fit	phosphatidylinositol glycan anchor biosynthesis, class B
chr5_+_28395296 Show fit	0.02	ENSRNOT00000009375	Tmem55a Links NCBI RGD Ensembl Show fit	transmembrane protein 55A
chr1_+_167944448 Show fit	0.02	ENSRNOT00000087667	Olr56 Links NCBI RGD Ensembl Show fit	olfactory receptor 56
chrX_+_105537602 Show fit	0.02	ENSRNOT00000029833	Armcx1 Links NCBI RGD Ensembl Show fit	armadillo repeat containing, X-linked 1
chr1_+_84304228 Show fit	0.02	ENSRNOT00000024771	Prx Links NCBI RGD Ensembl Show fit	periaxin
chr1_-_82279145 Show fit	0.02	ENSRNOT00000057433	Cxcl17 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine ligand 17
chr16_-_21274688 Show fit	0.02	ENSRNOT00000027953	Tssk6 Links NCBI RGD Ensembl Show fit	testis-specific serine kinase 6
chr5_+_104362971 Show fit	0.02	ENSRNOT00000058520	Adamtsl1 Links NCBI RGD Ensembl Show fit	ADAMTS-like 1
chr15_-_33656089 Show fit	0.02	ENSRNOT00000024186	Myh7 Links NCBI RGD Ensembl Show fit	myosin heavy chain 7
chr1_-_164307084 Show fit	0.02	ENSRNOT00000086091	Serpinh1 Links NCBI RGD Ensembl Show fit	serpin family H member 1
chr9_+_12633990 Show fit	0.02	ENSRNOT00000066517 ENSRNOT00000077532	Dazl Links NCBI RGD Ensembl Show fit	deleted in azoospermia-like
chr5_+_144308611 Show fit	0.02	ENSRNOT00000014388	Col8a2 Links NCBI RGD Ensembl Show fit	collagen type VIII alpha 2 chain
chr4_+_88584242 Show fit	0.02	ENSRNOT00000008973	Pyurf Links NCBI RGD Ensembl Show fit	PIGY upstream reading frame
chrX_-_30831483 Show fit	0.02	ENSRNOT00000004443	Glra2 Links NCBI RGD Ensembl Show fit	glycine receptor, alpha 2
chr5_-_144779212 Show fit	0.02	ENSRNOT00000016230	Ncdn Links NCBI RGD Ensembl Show fit	neurochondrin
chr12_-_52124779 Show fit	0.02	ENSRNOT00000088839	Galnt9 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 9
chr4_+_175431904 Show fit	0.02	ENSRNOT00000032843	Pde3a Links NCBI RGD Ensembl Show fit	phosphodiesterase 3A
chr1_+_22364551 Show fit	0.02	ENSRNOT00000043157	LOC108348200 Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8a
chr4_-_70659252 Show fit	0.02	ENSRNOT00000048049	Try10 Links NCBI RGD Ensembl Show fit	trypsin 10
chr7_+_107467260 Show fit	0.01	ENSRNOT00000009240 ENSRNOT00000077382	Tg Links NCBI RGD Ensembl Show fit	thyroglobulin
chr14_+_106393959 Show fit	0.01	ENSRNOT00000092168	Wdpcp Links NCBI RGD Ensembl Show fit	WD repeat containing planar cell polarity effector
chr1_-_100537377 Show fit	0.01	ENSRNOT00000026599	Spib Links NCBI RGD Ensembl Show fit	Spi-B transcription factor
chr7_+_1206648 Show fit	0.01	ENSRNOT00000073689	Pros1 Links NCBI RGD Ensembl Show fit	protein S (alpha)
chr12_+_37702404 Show fit	0.01	ENSRNOT00000049985	Mphosph9 Links NCBI RGD Ensembl Show fit	M-phase phosphoprotein 9
chr9_+_16612433 Show fit	0.01	ENSRNOT00000023979	Klhdc3 Links NCBI RGD Ensembl Show fit	kelch domain containing 3
chr20_+_12052693 Show fit	0.01	ENSRNOT00000083851	Adarb1 Links NCBI RGD Ensembl Show fit	adenosine deaminase, RNA-specific, B1
chr11_-_69223158 Show fit	0.01	ENSRNOT00000067060	Mylk Links NCBI RGD Ensembl Show fit	myosin light chain kinase
chr12_-_31629881 Show fit	0.01	ENSRNOT00000001238	Piwil1 Links NCBI RGD Ensembl Show fit	piwi-like RNA-mediated gene silencing 1
chr19_+_56136904 Show fit	0.01	ENSRNOT00000022823	Spire2 Links NCBI RGD Ensembl Show fit	spire-type actin nucleation factor 2
chr10_+_103349172 Show fit	0.01	ENSRNOT00000035963	Gpr142 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 142
chr4_+_180291389 Show fit	0.01	ENSRNOT00000002465	Sspn Links NCBI RGD Ensembl Show fit	sarcospan
chr14_+_85113578 Show fit	0.01	ENSRNOT00000011158	Nipsnap1 Links NCBI RGD Ensembl Show fit	nipsnap homolog 1
chr16_-_69961162 Show fit	0.01	ENSRNOT00000074955	Prrg3 Links NCBI RGD Ensembl Show fit	proline rich and Gla domain 3
chr11_+_58624198 Show fit	0.01	ENSRNOT00000002091	Gap43 Links NCBI RGD Ensembl Show fit	growth associated protein 43
chr5_+_144779681 Show fit	0.01	ENSRNOT00000016493	LOC100294508 Links NCBI RGD Ensembl Show fit	dyslexia susceptibility 2-like
chr1_-_82580007 Show fit	0.01	ENSRNOT00000078668	Axl Links NCBI RGD Ensembl Show fit	Axl receptor tyrosine kinase
chr10_-_45480999 Show fit	0.00	ENSRNOT00000078353 ENSRNOT00000084697 ENSRNOT00000087926	Obscn Links NCBI RGD Ensembl Show fit	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
chr15_+_42653148 Show fit	0.00	ENSRNOT00000022095	Clu Links NCBI RGD Ensembl Show fit	clusterin
chr5_-_28349927 Show fit	0.00	ENSRNOT00000008725	Otud6b Links NCBI RGD Ensembl Show fit	OTU domain containing 6B
chr9_+_38544398 Show fit	0.00	ENSRNOT00000016828	Prim2 Links NCBI RGD Ensembl Show fit	primase (DNA) subunit 2
chr1_-_256914260 Show fit	0.00	ENSRNOT00000020620	Fra10ac1 Links NCBI RGD Ensembl Show fit	FRA10A associated CGG repeat 1
chr3_-_4405194 Show fit	0.00	ENSRNOT00000072025	AABR07051266.1 Links NCBI RGD Ensembl Show fit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.6	GO:0006710	androgen catabolic process(GO:0006710)
0.0	0.1	GO:0060988	lipid tube assembly(GO:0060988)
0.0	0.1	GO:0097374	proprioception(GO:0019230) sensory neuron axon guidance(GO:0097374)
0.0	0.1	GO:0030886	negative regulation of myeloid dendritic cell activation(GO:0030886)
0.0	0.1	GO:0033386	geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.0	0.2	GO:0002318	myeloid progenitor cell differentiation(GO:0002318)
0.0	0.1	GO:0035772	interleukin-13-mediated signaling pathway(GO:0035772)
0.0	0.1	GO:0031508	pericentric heterochromatin assembly(GO:0031508) regulation of chromosome condensation(GO:0060623)
0.0	0.1	GO:0045039	protein import into mitochondrial inner membrane(GO:0045039)
0.0	0.1	GO:0060244	negative regulation of cell proliferation involved in contact inhibition(GO:0060244)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002189	ribose phosphate diphosphokinase complex(GO:0002189)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0004337	dimethylallyltranstransferase activity(GO:0004161) geranyltranstransferase activity(GO:0004337)
0.0	0.1	GO:0030060	L-malate dehydrogenase activity(GO:0030060)
0.0	0.1	GO:0016721	superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.6	PID INTEGRIN A9B1 PATHWAY	Alpha9 beta1 integrin signaling events
0.0	0.1	ST IL 13 PATHWAY	Interleukin 13 (IL-13) Pathway