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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Crx_Gsc
Z-value: 0.52
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Transcription factors associated with Crx_Gsc
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr8_+_55050284 Show fit | 0.32 |
ENSRNOT00000013242
|
PIH1 domain containing 2 |
|
| chr3_+_138174054 Show fit | 0.25 |
ENSRNOT00000007946
|
barrier to autointegration factor 2 |
|
| chr5_-_135025084 Show fit | 0.17 |
ENSRNOT00000018766
|
tetraspanin 1 |
|
| chr3_-_40477754 Show fit | 0.15 |
ENSRNOT00000091168
|
|
|
| chr2_+_206342066 Show fit | 0.15 |
ENSRNOT00000026556
|
protein tyrosine phosphatase, non-receptor type 22 |
|
| chr20_+_4967194 Show fit | 0.15 |
ENSRNOT00000070846
|
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated |
|
| chr10_+_70884531 Show fit | 0.14 |
ENSRNOT00000015199
|
C-C motif chemokine ligand 4 |
|
| chr10_+_15156207 Show fit | 0.13 |
ENSRNOT00000020363
|
coiled-coil domain containing 78 |
|
| chr5_+_138300107 Show fit | 0.12 |
ENSRNOT00000047151
|
claudin 19 |
|
| chr10_+_109774878 Show fit | 0.11 |
ENSRNOT00000054954
|
anaphase promoting complex subunit 11 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Crx_Gsc
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0033625 | positive regulation of integrin activation(GO:0033625) |
| 0.0 | 0.1 | GO:0071663 | negative regulation of nucleotide-binding oligomerization domain containing signaling pathway(GO:0070425) negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway(GO:0070433) granzyme B production(GO:0071613) regulation of granzyme B production(GO:0071661) positive regulation of granzyme B production(GO:0071663) |
| 0.0 | 0.1 | GO:0002572 | pro-T cell differentiation(GO:0002572) |
| 0.0 | 0.1 | GO:0030091 | protein repair(GO:0030091) |
| 0.0 | 0.1 | GO:2000503 | positive regulation of natural killer cell chemotaxis(GO:2000503) |
| 0.0 | 0.1 | GO:0034441 | plasma lipoprotein particle oxidation(GO:0034441) negative regulation of lipoprotein oxidation(GO:0034443) |
| 0.0 | 0.1 | GO:0001788 | antibody-dependent cellular cytotoxicity(GO:0001788) |
| 0.0 | 0.1 | GO:0098535 | de novo centriole assembly(GO:0098535) |
| 0.0 | 0.1 | GO:0002188 | translation reinitiation(GO:0002188) |
| 0.0 | 0.1 | GO:0016332 | establishment or maintenance of polarity of embryonic epithelium(GO:0016332) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:1990726 | Lsm1-7-Pat1 complex(GO:1990726) |
| 0.0 | 0.2 | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263) |
| 0.0 | 0.1 | GO:0035985 | senescence-associated heterochromatin focus(GO:0035985) |
| 0.0 | 0.1 | GO:0098536 | deuterosome(GO:0098536) |
| 0.0 | 0.1 | GO:1990005 | granular vesicle(GO:1990005) |
| 0.0 | 0.1 | GO:0042719 | mitochondrial intermembrane space protein transporter complex(GO:0042719) |
| 0.0 | 0.1 | GO:0002081 | outer acrosomal membrane(GO:0002081) |
| 0.0 | 0.0 | GO:0097058 | CRLF-CLCF1 complex(GO:0097058) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0017160 | Ral GTPase binding(GO:0017160) |
| 0.0 | 0.1 | GO:0031726 | CCR1 chemokine receptor binding(GO:0031726) |
| 0.0 | 0.1 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 0.1 | GO:0102007 | lactonohydrolase activity(GO:0046573) acyl-L-homoserine-lactone lactonohydrolase activity(GO:0102007) |
| 0.0 | 0.1 | GO:0031735 | CCR10 chemokine receptor binding(GO:0031735) |
| 0.0 | 0.1 | GO:0031752 | D5 dopamine receptor binding(GO:0031752) |
| 0.0 | 0.1 | GO:0005134 | interleukin-2 receptor binding(GO:0005134) |
| 0.0 | 0.1 | GO:0004505 | phenylalanine 4-monooxygenase activity(GO:0004505) |
| 0.0 | 0.1 | GO:0004974 | leukotriene receptor activity(GO:0004974) |
| 0.0 | 0.1 | GO:1990226 | histone methyltransferase binding(GO:1990226) |