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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Pax6

Z-value: 0.35

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Transcription factors associated with Pax6

Gene Symbol Gene ID Gene Info
ENSRNOG00000004410 paired box 6

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Pax6rn6_v1_chr3_+_95715193_957151930.543.5e-01Click!

Activity profile of Pax6 motif

Sorted Z-values of Pax6 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr5_-_2982603 0.13 ENSRNOT00000045460
potassium voltage-gated channel subfamily B member 2
chr19_+_10563423 0.10 ENSRNOT00000021037
docking protein 4
chr2_-_41785792 0.09 ENSRNOT00000015871
RAB3C, member RAS oncogene family
chr1_-_166911694 0.08 ENSRNOT00000066915
inositol polyphosphate phosphatase-like 1
chr16_+_35573058 0.08 ENSRNOT00000059580
polypeptide N-acetylgalactosaminyltransferase-like 6
chr6_+_106052212 0.07 ENSRNOT00000010626
signal-induced proliferation-associated 1 like 1
chr5_+_152613255 0.07 ENSRNOT00000037097
platelet-activating factor acetylhydrolase 2
chr1_-_87777359 0.06 ENSRNOT00000074090

chr8_-_117237229 0.06 ENSRNOT00000071381
kelch domain containing 8B
chr6_-_3254779 0.06 ENSRNOT00000061975
cyclin-dependent kinase-like 4
chr9_-_103207190 0.06 ENSRNOT00000026010
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
chr20_+_3230052 0.06 ENSRNOT00000078454
RT1 class I, locus T24, gene 3
chr17_-_44840131 0.06 ENSRNOT00000083417
histone cluster 1, H3b
chr17_-_42031265 0.06 ENSRNOT00000068021
doublecortin domain containing 2
chr3_+_95715193 0.06 ENSRNOT00000089525
paired box 6
chrX_+_23146085 0.06 ENSRNOT00000068703
apurinic/apyrimidinic endodeoxyribonuclease 2
chr1_-_87777668 0.05 ENSRNOT00000037288

chr11_+_87549059 0.05 ENSRNOT00000002567
coiled-coil domain containing 74A
chr16_-_74864816 0.05 ENSRNOT00000017164
ALG11, alpha-1,2-mannosyltransferase
chr5_-_59553416 0.05 ENSRNOT00000090490
glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
chr16_-_19583386 0.05 ENSRNOT00000090131
zinc finger protein 617
chrX_+_82143789 0.05 ENSRNOT00000003724
POU class 3 homeobox 4
chr4_+_98457810 0.05 ENSRNOT00000074175

chr18_+_30869628 0.05 ENSRNOT00000060470
protocadherin gamma subfamily B, 4
chr12_+_37709860 0.05 ENSRNOT00000086244
M-phase phosphoprotein 9
chr6_-_65319527 0.05 ENSRNOT00000005618
syntaxin binding protein 6
chr12_-_13157570 0.04 ENSRNOT00000001437
ENSRNOT00000067332
ENSRNOT00000092238
diacylglycerol lipase, beta
chr1_+_86938138 0.04 ENSRNOT00000075601
coiled-coil glutamate-rich protein 2
chr2_+_26240385 0.04 ENSRNOT00000024292
coagulation factor II (thrombin) receptor-like 2
chr18_+_55463308 0.04 ENSRNOT00000073388
interferon-inducible GTPase 1-like
chr1_-_84812486 0.04 ENSRNOT00000078369

chr11_+_43194348 0.04 ENSRNOT00000075303
olfactory receptor 1532
chr1_-_225952516 0.04 ENSRNOT00000043387
inner centromere protein
chr8_-_49280901 0.04 ENSRNOT00000021390
CD3g molecule
chr6_-_8344897 0.04 ENSRNOT00000082353
prolyl endopeptidase-like
chr1_+_261337594 0.04 ENSRNOT00000019874
phosphatidylinositol 4-kinase type 2 alpha
chr18_+_53088994 0.04 ENSRNOT00000091921

chr12_+_7208850 0.04 ENSRNOT00000001219
katanin catalytic subunit A1 like 1
chrX_-_15707436 0.04 ENSRNOT00000085907
synaptophysin
chr2_+_116032455 0.04 ENSRNOT00000066495
polyhomeotic homolog 3
chr14_-_33164141 0.04 ENSRNOT00000002844
RE1-silencing transcription factor
chrX_+_159158194 0.03 ENSRNOT00000043820
ENSRNOT00000001169
ENSRNOT00000083502
four and a half LIM domains 1
chr7_+_42304534 0.03 ENSRNOT00000085097
KIT ligand
chr3_+_72238981 0.03 ENSRNOT00000011006
solute carrier family 43 member 1
chr10_-_54967585 0.03 ENSRNOT00000005255
netrin 1
chr11_+_76147205 0.03 ENSRNOT00000071586
fibroblast growth factor 12
chr19_+_11450760 0.03 ENSRNOT00000026297
nudix hydrolase 21
chr3_-_12944494 0.03 ENSRNOT00000023172
multivesicular body subunit 12B
chr4_-_56786754 0.03 ENSRNOT00000050795
kielin/chordin-like protein
chr13_-_113872097 0.03 ENSRNOT00000010799
ENSRNOT00000084320
complement C3b/C4b receptor 1 like
chr2_-_188559882 0.03 ENSRNOT00000088199
tripartite motif-containing 46
chr4_+_149970567 0.03 ENSRNOT00000091765
heterogeneous nuclear ribonucleoprotein F
chr1_-_154170409 0.03 ENSRNOT00000089014
Hikeshi, heat shock protein nuclear import factor
chr2_+_188139730 0.03 ENSRNOT00000056789
ENSRNOT00000077698
gon-4 like
chr7_-_11699436 0.03 ENSRNOT00000049221
ENSRNOT00000066037
transmembrane protease, serine 9
chr18_+_30808404 0.03 ENSRNOT00000060475
protocadherin gamma subfamily A, 1
chr13_+_89718066 0.03 ENSRNOT00000005147
death effector domain-containing
chr17_-_2705123 0.03 ENSRNOT00000024940
olfactory receptor 1652
chr12_-_36555694 0.03 ENSRNOT00000001292
acetoacetyl-CoA synthetase
chr13_-_93307199 0.03 ENSRNOT00000065041
regulator of G-protein signaling 7
chr6_-_102196138 0.02 ENSRNOT00000014132
transmembrane protein 229B
chr11_-_84931160 0.02 ENSRNOT00000071848
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
chr10_-_58771908 0.02 ENSRNOT00000018808
similar to 4933427D14Rik protein
chr5_+_134679713 0.02 ENSRNOT00000067566
MOB kinase activator 3C
chr19_-_11451278 0.02 ENSRNOT00000026118
2-oxoglutarate and iron-dependent oxygenase domain containing 1
chr1_+_226947105 0.02 ENSRNOT00000028373
pre-mRNA processing factor 19
chr2_+_78245459 0.02 ENSRNOT00000089551
protein FAM134B
chr1_-_216971183 0.02 ENSRNOT00000077911
MAS related GPR family member E
chr14_+_86029335 0.02 ENSRNOT00000017375
drebrin-like
chr7_-_139907640 0.02 ENSRNOT00000045473
zinc finger protein 641
chr1_+_1771710 0.02 ENSRNOT00000080138
ENSRNOT00000073528
nucleoporin 43
chrX_-_77295426 0.02 ENSRNOT00000090833
TATA-box binding protein associated factor 9b
chr18_+_30880020 0.02 ENSRNOT00000060468
protocadherin gamma subfamily B, 5
chr18_+_402295 0.02 ENSRNOT00000033618
FUN14 domain containing 2
chr8_-_71533069 0.02 ENSRNOT00000021863
thyroid hormone receptor interactor 4
chr3_-_52849907 0.02 ENSRNOT00000041096
sodium voltage-gated channel alpha subunit 7
chr3_+_128828331 0.02 ENSRNOT00000045393
phospholipase C, beta 4
chr10_+_97710905 0.02 ENSRNOT00000000263
archaelysin family metallopeptidase 2
chr3_+_121632043 0.02 ENSRNOT00000024882
RNA polymerase I subunit B
chr11_-_84090259 0.02 ENSRNOT00000002321
eukaryotic translation initiation factor 2B subunit 5 epsilon
chr4_-_155690869 0.02 ENSRNOT00000012216
complement C3a receptor 1
chr2_+_187322416 0.02 ENSRNOT00000025183
cellular retinoic acid binding protein 2
chr10_+_46940965 0.02 ENSRNOT00000005366
LLGL1, scribble cell polarity complex component
chr12_-_13998172 0.02 ENSRNOT00000001476
WD repeat domain, phosphoinositide interacting 2
chr5_+_103479767 0.02 ENSRNOT00000008999
SH3 domain-containing GRB2-like 2
chr8_+_48699769 0.02 ENSRNOT00000044613
hypoxia up-regulated 1
chr20_+_4369178 0.01 ENSRNOT00000088079
1-acylglycerol-3-phosphate O-acyltransferase 1
chr6_+_128750795 0.01 ENSRNOT00000005781
glutaredoxin 5
chr5_+_64892802 0.01 ENSRNOT00000059869
ring finger protein 20
chr3_-_64364101 0.01 ENSRNOT00000089065
zinc finger protein 385B
chr12_+_38377034 0.01 ENSRNOT00000088002
CAP-GLY domain containing linker protein 1
chr9_+_52687868 0.01 ENSRNOT00000083864
WD repeat domain 75
chr6_+_26546924 0.01 ENSRNOT00000007763
eukaryotic translation initiation factor 2B subunit delta
chr8_-_50126413 0.01 ENSRNOT00000072712
ENSRNOT00000022583
centrosomal protein 164
chr18_+_55666027 0.01 ENSRNOT00000045950
similar to CDNA sequence BC023105
chr13_-_50514151 0.01 ENSRNOT00000003951
renin
chr3_-_12467662 0.01 ENSRNOT00000051893
zinc finger and BTB domain containing 34
chr16_+_20704807 0.01 ENSRNOT00000027241
kelch-like family member 26
chr4_-_66955732 0.01 ENSRNOT00000084282
lysine (K)-specific demethylase 7A
chr13_+_93684437 0.01 ENSRNOT00000005005
kynurenine 3-monooxygenase
chr17_+_49610548 0.01 ENSRNOT00000017955
Yae1 domain containing 1
chr1_-_31528083 0.01 ENSRNOT00000061041
ribosomal protein L26, pseudogene 2
chr1_+_65851060 0.01 ENSRNOT00000036880
zinc finger and SCAN domain containing 18
chr5_+_153260930 0.01 ENSRNOT00000023289
ENSRNOT00000082184
arginine and serine rich protein 1
chr10_+_58995556 0.01 ENSRNOT00000045100
gamma-glutamyl transferase 6
chr5_-_119564846 0.01 ENSRNOT00000012977
cytochrome P450, family 2, subfamily j, polypeptide 4
chr1_+_214215992 0.01 ENSRNOT00000051755
ENSRNOT00000023376
PHD and ring finger domains 1
chr11_-_79703736 0.01 ENSRNOT00000044279
LIM domain containing preferred translocation partner in lipoma
chr7_+_80750725 0.01 ENSRNOT00000079962
oxidation resistance 1
chr15_+_18941431 0.01 ENSRNOT00000092092

chr13_+_92264231 0.01 ENSRNOT00000066509
ENSRNOT00000004716
spectrin, alpha, erythrocytic 1
chr3_+_101899068 0.01 ENSRNOT00000079600
ENSRNOT00000006256
mucin 15, cell surface associated
chr11_-_69223158 0.01 ENSRNOT00000067060
myosin light chain kinase
chr1_-_23556241 0.01 ENSRNOT00000072943
syntaxin-7-like
chrX_-_63291107 0.01 ENSRNOT00000092019
eukaryotic translation initiation factor 2 subunit gamma
chr6_-_26546545 0.01 ENSRNOT00000091264
sorting nexin 17
chr10_-_43760930 0.01 ENSRNOT00000003639
zinc finger protein 672
chr7_+_13318533 0.01 ENSRNOT00000034545
similar to zinc finger protein 84 (HPF2)
chr2_-_205212681 0.01 ENSRNOT00000022575
thyroid stimulating hormone, beta
chr2_-_227145185 0.01 ENSRNOT00000083189

chr20_-_7142213 0.01 ENSRNOT00000078918
RGD1564450
chr15_+_93612971 0.00 ENSRNOT00000013182
aconitate decarboxylase 1
chr10_+_109786222 0.00 ENSRNOT00000054953
neuropeptide B
chr13_+_44957014 0.00 ENSRNOT00000004878
UBX domain protein 4
chr1_-_80271001 0.00 ENSRNOT00000034266
CD3e molecule associated protein
chr2_-_88553086 0.00 ENSRNOT00000042494
similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
chr15_+_32386816 0.00 ENSRNOT00000060322

chr3_-_83048289 0.00 ENSRNOT00000047571
ENSRNOT00000012806
hydroxysteroid (17-beta) dehydrogenase 12
chr13_+_73708815 0.00 ENSRNOT00000071482
ENSRNOT00000077874
ENSRNOT00000050734
torsin 1A interacting protein 2
torsin 1A interacting protein 2
chr2_-_34254968 0.00 ENSRNOT00000016439
trafficking protein particle complex 13
chr5_+_98387291 0.00 ENSRNOT00000046503
tyrosinase-related protein 1
chr10_-_25890639 0.00 ENSRNOT00000085499
hyaluronan-mediated motility receptor
chr20_-_29558321 0.00 ENSRNOT00000000702
anaphase promoting complex subunit 16
chr17_+_30670171 0.00 ENSRNOT00000022369
family with sequence similarity 217, member A
chr10_-_25847994 0.00 ENSRNOT00000082076
methionine adenosyltransferase 2B
chr10_-_65424802 0.00 ENSRNOT00000018468
Tnf receptor associated factor 4
chr20_-_45260119 0.00 ENSRNOT00000000718
solute carrier family 16 member 10
chr6_+_97110158 0.00 ENSRNOT00000088430
synaptotagmin 16
chr10_+_53595854 0.00 ENSRNOT00000044116
SCO1 cytochrome c oxidase assembly protein
chr3_+_159995064 0.00 ENSRNOT00000012606
alpha tocopherol transfer protein like
chr10_-_53595827 0.00 ENSRNOT00000004560
ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent

Network of associatons between targets according to the STRING database.

First level regulatory network of Pax6

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0021917 pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)
0.0 0.1 GO:0006045 N-acetylglucosamine biosynthetic process(GO:0006045) N-acetylneuraminate biosynthetic process(GO:0046380)
0.0 0.0 GO:0045575 basophil activation(GO:0045575)
0.0 0.0 GO:2000474 regulation of opioid receptor signaling pathway(GO:2000474)
0.0 0.1 GO:0001574 ganglioside biosynthetic process(GO:0001574)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.0 GO:0035838 growing cell tip(GO:0035838)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity(GO:0003828)
0.0 0.1 GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.0 0.1 GO:0000026 alpha-1,2-mannosyltransferase activity(GO:0000026)
0.0 0.1 GO:0009384 N-acylmannosamine kinase activity(GO:0009384)
0.0 0.0 GO:0035651 AP-3 adaptor complex binding(GO:0035651)
0.0 0.1 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.1 GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity(GO:0003847)
0.0 0.0 GO:0015057 thrombin receptor activity(GO:0015057)