ISMARA results: Phox2a

Project

GSE49485: Hypoxia transcriptome sequencing of rat brain.

Navigation

Downloads

Results for Phox2a

Z-value: 0.41

Motif logo

Transcription factors associated with Phox2a

Gene Symbol	Gene ID	Gene Info
Phox2a NCBI RGD Ensembl	ENSRNOG00000019706	paired-like homeobox 2a

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Phox2a	rn6_v1_chr1_+_166893734_166893734	0.64	2.4e-01	Click!

Activity profile of Phox2a motif

Sorted Z-values of Phox2a motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_2174131 Show fit	1.08	ENSRNOT00000001313	Pcp2 NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr10_-_88670430 Show fit	0.50	ENSRNOT00000025547	Hcrt NCBI RGD Ensembl Show fit	hypocretin neuropeptide precursor
chr2_+_145174876 Show fit	0.36	ENSRNOT00000040631	Mab21l1 NCBI RGD Ensembl Show fit	mab-21 like 1
chr2_-_185852759 Show fit	0.24	ENSRNOT00000049461	Mab21l2 NCBI RGD Ensembl Show fit	mab-21 like 2
chr1_-_190370499 Show fit	0.14	ENSRNOT00000084389	AABR07005618.1 NCBI RGD Ensembl Show fit
chr9_+_15166118 Show fit	0.08	ENSRNOT00000020432	Mdfi NCBI RGD Ensembl Show fit	MyoD family inhibitor
chrX_+_74200972 Show fit	0.08	ENSRNOT00000076956	Chic1 NCBI RGD Ensembl Show fit	cysteine-rich hydrophobic domain 1
chr3_+_14889510 Show fit	0.07	ENSRNOT00000080760	Dab2ip NCBI RGD Ensembl Show fit	DAB2 interacting protein
chr10_+_61685645 Show fit	0.06	ENSRNOT00000003933	Mnt NCBI RGD Ensembl Show fit	MAX network transcriptional repressor
chrX_-_104932508 Show fit	0.06	ENSRNOT00000075325	Nox1 NCBI RGD Ensembl Show fit	NADPH oxidase 1

Showing 1 to 10 of 29 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Phox2a

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.0	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.1	0.5	GO:0051970	negative regulation of transmission of nerve impulse(GO:0051970)
0.0	0.2	GO:0010172	embryonic body morphogenesis(GO:0010172)
0.0	0.1	GO:0043324	eye pigment metabolic process(GO:0042441) pigment metabolic process involved in developmental pigmentation(GO:0043324) pigment metabolic process involved in pigmentation(GO:0043474) rhodopsin metabolic process(GO:0046154)
0.0	0.1	GO:0036324	vascular endothelial growth factor receptor-2 signaling pathway(GO:0036324)
0.0	0.1	GO:0045726	positive regulation of integrin biosynthetic process(GO:0045726) oxygen metabolic process(GO:0072592)
0.0	0.0	GO:0052422	modulation of catalytic activity in other organism involved in symbiotic interaction(GO:0052203) modulation by host of symbiont catalytic activity(GO:0052422) regulation of exo-alpha-sialidase activity(GO:1903015)

Showing 1 to 7 of 7 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1990032	parallel fiber(GO:1990032)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Total log-likelihood	Term	Description
0.5	GO:0005184	neuropeptide hormone activity(GO:0005184)
0.1	GO:0015252	hydrogen ion channel activity(GO:0015252)
0.1	GO:0035662	Toll-like receptor 4 binding(GO:0035662)

Showing 1 to 3 of 3 entries

Results for Phox2a

Z-value: 0.41

Motif logo

Transcription factors associated with Phox2a

Activity-expression correlation:

Activity profile of Phox2a motif

Sorted Z-values of Phox2a motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Phox2a

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: