GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Grhl1 Links NCBI RGD Ensembl	ENSRNOG00000054989	grainyhead-like transcription factor 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Grhl1	rn6_v1_chr6_+_43743702_43743702	-0.73	1.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr14_-_37770059 Show fit	0.20	ENSRNOT00000029721	Slc10a4 Links NCBI RGD Ensembl Show fit	solute carrier family 10, member 4
chr11_+_67465236 Show fit	0.16	ENSRNOT00000042374	Stfa2 Links NCBI RGD Ensembl Show fit	stefin A2
chr7_+_118490560 Show fit	0.11	ENSRNOT00000064873	LOC108348145 Links NCBI RGD Ensembl Show fit	zinc finger protein 7-like
chr7_+_117951154 Show fit	0.11	ENSRNOT00000060181	Znf7 Links NCBI RGD Ensembl Show fit	zinc finger protein 7
chr1_+_101541266 Show fit	0.10	ENSRNOT00000028436	Hsd17b14 Links NCBI RGD Ensembl Show fit	hydroxysteroid (17-beta) dehydrogenase 14
chr18_+_51523758 Show fit	0.10	ENSRNOT00000078518	Gramd3 Links NCBI RGD Ensembl Show fit	GRAM domain containing 3
chr2_+_227095487 Show fit	0.10	ENSRNOT00000019647	LOC691807 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691807
chr1_-_166037424 Show fit	0.09	ENSRNOT00000026115	P2ry2 Links NCBI RGD Ensembl Show fit	purinergic receptor P2Y2
chr16_-_19777414 Show fit	0.09	ENSRNOT00000022898	Nr2f6 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group F, member 6
chr5_-_77945016 Show fit	0.08	ENSRNOT00000076223	Zfp37 Links NCBI RGD Ensembl Show fit	zinc finger protein 37
chr4_-_71763679 Show fit	0.08	ENSRNOT00000024037	Epha1 Links NCBI RGD Ensembl Show fit	Eph receptor A1
chr4_-_161757447 Show fit	0.08	ENSRNOT00000008737	Fkbp4 Links NCBI RGD Ensembl Show fit	FK506 binding protein 4
chr1_+_214328071 Show fit	0.07	ENSRNOT00000024725	Eps8l2 Links NCBI RGD Ensembl Show fit	EPS8-like 2
chr4_-_98342887 Show fit	0.07	ENSRNOT00000010156	Tacstd2 Links NCBI RGD Ensembl Show fit	tumor-associated calcium signal transducer 2
chr3_-_10371240 Show fit	0.07	ENSRNOT00000012075	Ass1 Links NCBI RGD Ensembl Show fit	argininosuccinate synthase 1
chr15_-_55277713 Show fit	0.07	ENSRNOT00000023037	Itm2b Links NCBI RGD Ensembl Show fit	integral membrane protein 2B
chr1_+_234749568 Show fit	0.07	ENSRNOT00000016871	Ostf1 Links NCBI RGD Ensembl Show fit	osteoclast stimulating factor 1
chr1_-_162713610 Show fit	0.07	ENSRNOT00000018091	Aqp11 Links NCBI RGD Ensembl Show fit	aquaporin 11
chr20_-_1818800 Show fit	0.07	ENSRNOT00000000990	RT1-M3-1 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus M3, gene 1
chr20_-_27578244 Show fit	0.06	ENSRNOT00000000708	Fam26d Links NCBI RGD Ensembl Show fit	family with sequence similarity 26, member D
chr1_+_166433109 Show fit	0.06	ENSRNOT00000026428	Stard10 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 10
chr9_+_10885560 Show fit	0.06	ENSRNOT00000072870	Mydgf Links NCBI RGD Ensembl Show fit	myeloid-derived growth factor
chr7_+_143882000 Show fit	0.06	ENSRNOT00000017110 ENSRNOT00000091053	Mfsd5 Links NCBI RGD Ensembl Show fit	major facilitator superfamily domain containing 5
chr15_-_37410848 Show fit	0.06	ENSRNOT00000081757	Gjb6 Links NCBI RGD Ensembl Show fit	gap junction protein, beta 6
chr4_+_62780596 Show fit	0.05	ENSRNOT00000073846	LOC689574 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC689574
chr20_-_3728844 Show fit	0.05	ENSRNOT00000074958	Psors1c2 Links NCBI RGD Ensembl Show fit	psoriasis susceptibility 1 candidate 2
chr18_-_76753902 Show fit	0.05	ENSRNOT00000078797	Hsbp1l1 Links NCBI RGD Ensembl Show fit	heat shock factor binding protein 1-like 1
chr3_-_111941841 Show fit	0.05	ENSRNOT00000010701	Ehd4 Links NCBI RGD Ensembl Show fit	EH-domain containing 4
chr8_+_13796021 Show fit	0.05	ENSRNOT00000013927	Vstm5 Links NCBI RGD Ensembl Show fit	V-set and transmembrane domain containing 5
chr8_+_47674321 Show fit	0.04	ENSRNOT00000026170 ENSRNOT00000078776	Trim29 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 29
chr1_-_116567189 Show fit	0.04	ENSRNOT00000048996	LOC100912195 Links NCBI RGD Ensembl Show fit	protein BEX1-like
chr6_-_114488880 Show fit	0.03	ENSRNOT00000087560	AC118957.1 Links NCBI RGD Ensembl Show fit
chr10_+_28449335 Show fit	0.03	ENSRNOT00000029118	Atp10b Links NCBI RGD Ensembl Show fit	ATPase phospholipid transporting 10B (putative)
chr20_-_3605638 Show fit	0.03	ENSRNOT00000074460	Sfta2 Links NCBI RGD Ensembl Show fit	surfactant associated 2
chr5_+_154077944 Show fit	0.03	ENSRNOT00000031512	Il22ra1 Links NCBI RGD Ensembl Show fit	interleukin 22 receptor subunit alpha 1
chr5_+_147288723 Show fit	0.03	ENSRNOT00000033285	Tmem54 Links NCBI RGD Ensembl Show fit	transmembrane protein 54
chr11_+_47260641 Show fit	0.03	ENSRNOT00000078856	Nfkbiz Links NCBI RGD Ensembl Show fit	NFKB inhibitor zeta
chr1_-_234749447 Show fit	0.02	ENSRNOT00000016930	Nmrk1 Links NCBI RGD Ensembl Show fit	nicotinamide riboside kinase 1
chr9_+_95295701 Show fit	0.02	ENSRNOT00000025045	Ugt1a5 Links NCBI RGD Ensembl Show fit	UDP glucuronosyltransferase family 1 member A5
chr17_-_57984036 Show fit	0.02	ENSRNOT00000022389	Idi1 Links NCBI RGD Ensembl Show fit	isopentenyl-diphosphate delta isomerase 1
chr5_+_157434481 Show fit	0.02	ENSRNOT00000088556	Tmco4 Links NCBI RGD Ensembl Show fit	transmembrane and coiled-coil domains 4
chr1_+_40529045 Show fit	0.02	ENSRNOT00000026564	Mthfd1l Links NCBI RGD Ensembl Show fit	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
chr15_-_34392066 Show fit	0.02	ENSRNOT00000027315	Tgm1 Links NCBI RGD Ensembl Show fit	transglutaminase 1
chr1_-_157494008 Show fit	0.02	ENSRNOT00000013552	Pcf11 Links NCBI RGD Ensembl Show fit	PCF11 cleavage and polyadenylation factor subunit
chr9_+_53626592 Show fit	0.02	ENSRNOT00000031267	Mfsd6 Links NCBI RGD Ensembl Show fit	major facilitator superfamily domain containing 6
chrX_-_84167717 Show fit	0.01	ENSRNOT00000006415	Pof1b Links NCBI RGD Ensembl Show fit	premature ovarian failure 1B
chr18_-_28428117 Show fit	0.01	ENSRNOT00000078202	Slc23a1 Links NCBI RGD Ensembl Show fit	solute carrier family 23 member 1
chr2_-_187909394 Show fit	0.01	ENSRNOT00000032355	Rab25 Links NCBI RGD Ensembl Show fit	RAB25, member RAS oncogene family
chr2_+_93669765 Show fit	0.01	ENSRNOT00000045438	Slc10a5 Links NCBI RGD Ensembl Show fit	solute carrier family 10, member 5
chr1_-_65659945 Show fit	0.01	ENSRNOT00000058574	Rnf225 Links NCBI RGD Ensembl Show fit	ring finger protein 225
chr13_+_52645257 Show fit	0.01	ENSRNOT00000012801	Lad1 Links NCBI RGD Ensembl Show fit	ladinin 1
chr3_-_8348746 Show fit	0.01	ENSRNOT00000064638	Trub2 Links NCBI RGD Ensembl Show fit	TruB pseudouridine synthase family member 2
chr3_-_120106697 Show fit	0.01	ENSRNOT00000020354	Prom2 Links NCBI RGD Ensembl Show fit	prominin 2
chr2_+_243820661 Show fit	0.00	ENSRNOT00000090526	Eif4e Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4E
chr16_+_20110148 Show fit	0.00	ENSRNOT00000080146 ENSRNOT00000025312	Jak3 Links NCBI RGD Ensembl Show fit	Janus kinase 3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0000053	argininosuccinate metabolic process(GO:0000053)
0.0	0.1	GO:0002481	antigen processing and presentation of exogenous peptide antigen via MHC class Ib(GO:0002477) antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent(GO:0002481)
0.0	0.1	GO:0042985	negative regulation of amyloid precursor protein biosynthetic process(GO:0042985)
0.0	0.1	GO:0015793	glycerol transport(GO:0015793)
0.0	0.1	GO:0090191	negative regulation of branching involved in ureteric bud morphogenesis(GO:0090191)
0.0	0.3	GO:0015721	bile acid and bile salt transport(GO:0015721)
0.0	0.1	GO:0071415	cellular response to purine-containing compound(GO:0071415)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0032398	MHC class Ib protein complex(GO:0032398)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0008508	bile acid:sodium symporter activity(GO:0008508)
0.0	0.1	GO:0047045	testosterone 17-beta-dehydrogenase (NADP+) activity(GO:0047045)
0.0	0.1	GO:0071553	uridine nucleotide receptor activity(GO:0015065) G-protein coupled pyrimidinergic nucleotide receptor activity(GO:0071553)
0.0	0.1	GO:0032767	copper-dependent protein binding(GO:0032767)
0.0	0.1	GO:0005005	transmembrane-ephrin receptor activity(GO:0005005)