ISMARA results: Grhl1

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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Grhl1

Z-value: 0.41

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Transcription factors associated with Grhl1

Gene Symbol	Gene ID	Gene Info
Grhl1 NCBI RGD Ensembl	ENSRNOG00000054989	grainyhead-like transcription factor 1

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Grhl1	rn6_v1_chr6_+_43743702_43743702	-0.73	1.6e-01	Click!

Activity profile of Grhl1 motif

Sorted Z-values of Grhl1 motif

Top targets:

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr14_-_37770059 Show fit	0.20	ENSRNOT00000029721	Slc10a4 NCBI RGD Ensembl Show fit	solute carrier family 10, member 4
chr11_+_67465236 Show fit	0.16	ENSRNOT00000042374	Stfa2 NCBI RGD Ensembl Show fit	stefin A2
chr7_+_118490560 Show fit	0.11	ENSRNOT00000064873	LOC108348145 NCBI RGD Ensembl Show fit	zinc finger protein 7-like
chr7_+_117951154 Show fit	0.11	ENSRNOT00000060181	Znf7 NCBI RGD Ensembl Show fit	zinc finger protein 7
chr1_+_101541266 Show fit	0.10	ENSRNOT00000028436	Hsd17b14 NCBI RGD Ensembl Show fit	hydroxysteroid (17-beta) dehydrogenase 14
chr18_+_51523758 Show fit	0.10	ENSRNOT00000078518	Gramd3 NCBI RGD Ensembl Show fit	GRAM domain containing 3
chr2_+_227095487 Show fit	0.10	ENSRNOT00000019647	LOC691807 NCBI RGD Ensembl Show fit	hypothetical protein LOC691807
chr1_-_166037424 Show fit	0.09	ENSRNOT00000026115	P2ry2 NCBI RGD Ensembl Show fit	purinergic receptor P2Y2
chr16_-_19777414 Show fit	0.09	ENSRNOT00000022898	Nr2f6 NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group F, member 6
chr5_-_77945016 Show fit	0.08	ENSRNOT00000076223	Zfp37 NCBI RGD Ensembl Show fit	zinc finger protein 37

Showing 1 to 10 of 55 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Grhl1

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Total log-likelihood	Term	Description
0.3	GO:0015721	bile acid and bile salt transport(GO:0015721)
0.1	GO:0000053	argininosuccinate metabolic process(GO:0000053)
0.1	GO:0002481	antigen processing and presentation of exogenous peptide antigen via MHC class Ib(GO:0002477) antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent(GO:0002481)
0.1	GO:0042985	negative regulation of amyloid precursor protein biosynthetic process(GO:0042985)
0.1	GO:0015793	glycerol transport(GO:0015793)
0.1	GO:0090191	negative regulation of branching involved in ureteric bud morphogenesis(GO:0090191)
0.1	GO:0071415	cellular response to purine-containing compound(GO:0071415)

Showing 1 to 7 of 7 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0032398	MHC class Ib protein complex(GO:0032398)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0008508	bile acid:sodium symporter activity(GO:0008508)
0.0	0.1	GO:0047045	testosterone 17-beta-dehydrogenase (NADP+) activity(GO:0047045)
0.0	0.1	GO:0071553	uridine nucleotide receptor activity(GO:0015065) G-protein coupled pyrimidinergic nucleotide receptor activity(GO:0071553)
0.0	0.1	GO:0032767	copper-dependent protein binding(GO:0032767)
0.0	0.1	GO:0005005	transmembrane-ephrin receptor activity(GO:0005005)

Showing 1 to 5 of 5 entries

Results for Grhl1

Z-value: 0.41

Motif logo

Transcription factors associated with Grhl1

Activity-expression correlation:

Activity profile of Grhl1 motif

Sorted Z-values of Grhl1 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Grhl1

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: