GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Rhox11 Links NCBI RGD Ensembl	ENSRNOG00000028044	reproductive homeobox 11

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_252808380 Show fit	0.08	ENSRNOT00000025856	Ch25h Links NCBI RGD Ensembl Show fit	cholesterol 25-hydroxylase
chr7_+_15422479 Show fit	0.08	ENSRNOT00000066520	Zfp563 Links NCBI RGD Ensembl Show fit	zinc finger protein 563
chr1_-_266914093 Show fit	0.08	ENSRNOT00000027526	Calhm2 Links NCBI RGD Ensembl Show fit	calcium homeostasis modulator 2
chr8_-_77599781 Show fit	0.07	ENSRNOT00000087980	Aqp9 Links NCBI RGD Ensembl Show fit	aquaporin 9
chr6_-_49324450 Show fit	0.07	ENSRNOT00000066904	Sntg2 Links NCBI RGD Ensembl Show fit	syntrophin, gamma 2
chr9_-_52830457 Show fit	0.07	ENSRNOT00000073557	Slc40a1 Links NCBI RGD Ensembl Show fit	solute carrier family 40 member 1
chr10_+_72272248 Show fit	0.07	ENSRNOT00000003908	Car4 Links NCBI RGD Ensembl Show fit	carbonic anhydrase 4
chr13_+_87986240 Show fit	0.06	ENSRNOT00000003705	Rgs5 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 5
chr3_-_43117337 Show fit	0.06	ENSRNOT00000078001	Nr4a2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 4, group A, member 2
chr4_-_78342863 Show fit	0.06	ENSRNOT00000049038	Gimap6 Links NCBI RGD Ensembl Show fit	GTPase, IMAP family member 6
chr11_+_74014983 Show fit	0.05	ENSRNOT00000040884	NEWGENE_2724 Links NCBI RGD Ensembl Show fit	glycoprotein V platelet
chr3_+_177164359 Show fit	0.05	ENSRNOT00000066837	RGD1561282 Links NCBI RGD Ensembl Show fit	RGD1561282
chr11_+_38035450 Show fit	0.05	ENSRNOT00000083067	Mx2 Links NCBI RGD Ensembl Show fit	MX dynamin like GTPase 2
chr2_+_55747318 Show fit	0.05	ENSRNOT00000050655	Dab2 Links NCBI RGD Ensembl Show fit	DAB2, clathrin adaptor protein
chr8_+_113936991 Show fit	0.05	ENSRNOT00000017743	Aste1 Links NCBI RGD Ensembl Show fit	asteroid homolog 1 (Drosophila)
chr7_-_29233392 Show fit	0.04	ENSRNOT00000064241	Spic Links NCBI RGD Ensembl Show fit	Spi-C transcription factor
chr15_-_61648267 Show fit	0.04	ENSRNOT00000071805	Naa16 Links NCBI RGD Ensembl Show fit	N(alpha)-acetyltransferase 16, NatA auxiliary subunit
chr17_+_89452814 Show fit	0.04	ENSRNOT00000058760	RGD1561231 Links NCBI RGD Ensembl Show fit	similar to MAP/microtubule affinity-regulating kinase 4 (MAP/microtubule affinity-regulating kinase like 1)
chr1_+_85386470 Show fit	0.04	ENSRNOT00000093332 ENSRNOT00000044326	Plekhg2 Links NCBI RGD Ensembl Show fit	pleckstrin homology and RhoGEF domain containing G2
chr7_+_137155481 Show fit	0.04	ENSRNOT00000089895	Ano6 Links NCBI RGD Ensembl Show fit	anoctamin 6
chr15_+_3436361 Show fit	0.03	ENSRNOT00000016387	Ap3m1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 3, mu 1 subunit
chr2_+_263212051 Show fit	0.03	ENSRNOT00000089396	Negr1 Links NCBI RGD Ensembl Show fit	neuronal growth regulator 1
chr19_+_38422164 Show fit	0.03	ENSRNOT00000017174	Nqo1 Links NCBI RGD Ensembl Show fit	NAD(P)H quinone dehydrogenase 1
chr3_+_72080630 Show fit	0.03	ENSRNOT00000008911	Med19 Links NCBI RGD Ensembl Show fit	mediator complex subunit 19
chr7_+_24638208 Show fit	0.03	ENSRNOT00000009135	Mterf2 Links NCBI RGD Ensembl Show fit	mitochondrial transcription termination factor 2
chr5_+_74727494 Show fit	0.03	ENSRNOT00000076683	Rn50_5_0791.1 Links NCBI RGD Ensembl Show fit
chr6_-_127337791 Show fit	0.03	ENSRNOT00000032015	Ifi27l2b Links NCBI RGD Ensembl Show fit	interferon, alpha-inducible protein 27 like 2B
chr5_+_141530211 Show fit	0.03	ENSRNOT00000056546	4933427I04Rik Links NCBI RGD Ensembl Show fit	Riken cDNA 4933427I04 gene
chr1_-_199655147 Show fit	0.03	ENSRNOT00000026979	LOC103691238 Links NCBI RGD Ensembl Show fit	zinc finger protein 239-like
chr14_+_82350734 Show fit	0.03	ENSRNOT00000023259	Tmem129 Links NCBI RGD Ensembl Show fit	transmembrane protein 129
chrX_+_908044 Show fit	0.03	ENSRNOT00000072087	Zfp300 Links NCBI RGD Ensembl Show fit	zinc finger protein 300
chr14_-_77810147 Show fit	0.03	ENSRNOT00000035427	Cytl1 Links NCBI RGD Ensembl Show fit	cytokine like 1
chr1_+_87655618 Show fit	0.03	ENSRNOT00000035994 ENSRNOT00000073521	Zfp84 Links NCBI RGD Ensembl Show fit	zinc finger protein 84
chr6_-_88917070 Show fit	0.03	ENSRNOT00000000767	Mdga2 Links NCBI RGD Ensembl Show fit	MAM domain containing glycosylphosphatidylinositol anchor 2
chr16_-_59721227 Show fit	0.03	ENSRNOT00000015166	Prag1 Links NCBI RGD Ensembl Show fit	PEAK1 related kinase activating pseudokinase 1
chr8_-_48672732 Show fit	0.03	ENSRNOT00000079275	Hmbs Links NCBI RGD Ensembl Show fit	hydroxymethylbilane synthase
chr4_-_9060554 Show fit	0.03	ENSRNOT00000046248	AABR07059215.1 Links NCBI RGD Ensembl Show fit
chr2_-_199354793 Show fit	0.03	ENSRNOT00000023548	Bcl9 Links NCBI RGD Ensembl Show fit	B-cell CLL/lymphoma 9
chr1_-_87777668 Show fit	0.02	ENSRNOT00000037288	AABR07002870.1 Links NCBI RGD Ensembl Show fit
chr1_-_67284864 Show fit	0.02	ENSRNOT00000082908	LOC691661 Links NCBI RGD Ensembl Show fit	similar to zinc finger and SCAN domain containing 4
chr9_-_30321323 Show fit	0.02	ENSRNOT00000018234	Fam135a Links NCBI RGD Ensembl Show fit	family with sequence similarity 135, member A
chr19_-_10976396 Show fit	0.02	ENSRNOT00000073239	Nlrc5 Links NCBI RGD Ensembl Show fit	NLR family, CARD domain containing 5
chrM_+_3904 Show fit	0.02	ENSRNOT00000040993	Mt-nd2 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 2
chr15_-_19282873 Show fit	0.02	ENSRNOT00000075184	NEWGENE_1359268 Links NCBI RGD Ensembl Show fit	Smad nuclear interacting protein 1
chr7_-_138483612 Show fit	0.02	ENSRNOT00000085620	Slc38a4 Links NCBI RGD Ensembl Show fit	solute carrier family 38, member 4
chr4_+_152437966 Show fit	0.02	ENSRNOT00000013070	Rad52 Links NCBI RGD Ensembl Show fit	RAD52 homolog, DNA repair protein
chr8_-_14880644 Show fit	0.02	ENSRNOT00000015977	Fat3 Links NCBI RGD Ensembl Show fit	FAT atypical cadherin 3
chr10_-_90657185 Show fit	0.02	ENSRNOT00000003685	Ccdc43 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 43
chr2_-_13696426 Show fit	0.02	ENSRNOT00000046251	Rasa1 Links NCBI RGD Ensembl Show fit	RAS p21 protein activator 1
chr1_-_167093560 Show fit	0.02	ENSRNOT00000027301	Il18bp Links NCBI RGD Ensembl Show fit	interleukin 18 binding protein
chr1_+_234252757 Show fit	0.02	ENSRNOT00000091814	Rorb Links NCBI RGD Ensembl Show fit	RAR-related orphan receptor B
chr14_+_109533792 Show fit	0.02	ENSRNOT00000067690	LOC108348154 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain-containing protein 29-like
chr2_-_122756842 Show fit	0.02	ENSRNOT00000080181	Ccdc144b Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 144B
chr10_-_73690860 Show fit	0.02	ENSRNOT00000004876 ENSRNOT00000075843	Ints2 Links NCBI RGD Ensembl Show fit	integrator complex subunit 2
chr3_-_120373500 Show fit	0.02	ENSRNOT00000067727	Nphp1 Links NCBI RGD Ensembl Show fit	nephrocystin 1
chrX_-_15347591 Show fit	0.02	ENSRNOT00000037066	Timm17b Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 17b
chr5_+_119727839 Show fit	0.02	ENSRNOT00000014354	Cachd1 Links NCBI RGD Ensembl Show fit	cache domain containing 1
chr4_-_155561324 Show fit	0.02	ENSRNOT00000085447	Slc2a3 Links NCBI RGD Ensembl Show fit	solute carrier family 2 member 3
chrX_-_17252877 Show fit	0.02	ENSRNOT00000060213	LOC102547118 Links NCBI RGD Ensembl Show fit	retinitis pigmentosa 1-like 1 protein-like
chr6_+_99883959 Show fit	0.02	ENSRNOT00000010588	Fntb Links NCBI RGD Ensembl Show fit	farnesyltransferase, CAAX box, beta
chr8_-_71337746 Show fit	0.02	ENSRNOT00000021554	Zfp609 Links NCBI RGD Ensembl Show fit	zinc finger protein 609
chr20_+_3363737 Show fit	0.02	ENSRNOT00000079654	Atat1 Links NCBI RGD Ensembl Show fit	alpha tubulin acetyltransferase 1
chr5_+_118574801 Show fit	0.02	ENSRNOT00000035949	Ube2u Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2U (putative)
chr15_-_103340239 Show fit	0.02	ENSRNOT00000067309 ENSRNOT00000088909	Tgds Links NCBI RGD Ensembl Show fit	TDP-glucose 4,6-dehydratase
chr9_+_95274707 Show fit	0.02	ENSRNOT00000045163	Ugt1a5 Links NCBI RGD Ensembl Show fit	UDP glucuronosyltransferase family 1 member A5
chr2_-_261402880 Show fit	0.01	ENSRNOT00000052396 ENSRNOT00000077839 ENSRNOT00000088561	Fpgt Links NCBI RGD Ensembl Show fit	fucose-1-phosphate guanylyltransferase
chr7_+_140608434 Show fit	0.01	ENSRNOT00000001163	AC114446.1 Links NCBI RGD Ensembl Show fit
chr20_+_27975549 Show fit	0.01	ENSRNOT00000092075	Lims1 Links NCBI RGD Ensembl Show fit	LIM zinc finger domain containing 1
chr10_-_70339578 Show fit	0.01	ENSRNOT00000076618	Slfn13 Links NCBI RGD Ensembl Show fit	schlafen family member 13
chr3_+_2262253 Show fit	0.01	ENSRNOT00000042100 ENSRNOT00000061303 ENSRNOT00000048137 ENSRNOT00000048353 ENSRNOT00000012129	Nsmf Links NCBI RGD Ensembl Show fit	NMDA receptor synaptonuclear signaling and neuronal migration factor
chr7_+_23012070 Show fit	0.01	ENSRNOT00000042460	LOC300308 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein 4930509O22
chr3_+_35175313 Show fit	0.01	ENSRNOT00000081744	Kif5c Links NCBI RGD Ensembl Show fit	kinesin family member 5C
chr14_-_70098021 Show fit	0.01	ENSRNOT00000004912	Med28 Links NCBI RGD Ensembl Show fit	mediator complex subunit 28
chrX_+_65800059 Show fit	0.01	ENSRNOT00000076428	Gpr165 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 165
chr9_-_113846053 Show fit	0.01	ENSRNOT00000017253	LOC100910483 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain-containing protein 12-like
chr13_+_47454591 Show fit	0.01	ENSRNOT00000005791	LOC498222 Links NCBI RGD Ensembl Show fit	similar to specifically androgen-regulated protein
chr1_+_64031859 Show fit	0.01	ENSRNOT00000090873	Mboat7l1 Links NCBI RGD Ensembl Show fit	membrane bound O-acyltransferase domain containing 7-like 1
chr11_-_38420032 Show fit	0.01	ENSRNOT00000002209 ENSRNOT00000080681	C2cd2 Links NCBI RGD Ensembl Show fit	C2 calcium-dependent domain containing 2
chr4_+_147844658 Show fit	0.01	ENSRNOT00000042673	H1foo Links NCBI RGD Ensembl Show fit	H1 histone family, member O, oocyte-specific
chr2_-_84436912 Show fit	0.01	ENSRNOT00000059565	Ankrd33b Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 33B
chrX_+_35599258 Show fit	0.01	ENSRNOT00000072627 ENSRNOT00000005061	Cdkl5 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase-like 5
chr3_-_151106557 Show fit	0.01	ENSRNOT00000025657	Gss Links NCBI RGD Ensembl Show fit	glutathione synthetase
chr3_+_56355431 Show fit	0.01	ENSRNOT00000037188	Myo3b Links NCBI RGD Ensembl Show fit	myosin IIIB
chr5_-_172335892 Show fit	0.01	ENSRNOT00000018494	Tnfrsf14 Links NCBI RGD Ensembl Show fit	TNF receptor superfamily member 14
chr2_-_88314254 Show fit	0.01	ENSRNOT00000038546	Car13 Links NCBI RGD Ensembl Show fit	carbonic anhydrase 13
chr15_+_37418885 Show fit	0.01	ENSRNOT00000043836	RGD1565170 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L23a
chr17_-_78561613 Show fit	0.01	ENSRNOT00000020220	Fam107b Links NCBI RGD Ensembl Show fit	family with sequence similarity 107, member B
chr12_-_2661565 Show fit	0.01	ENSRNOT00000064859	Cd209f Links NCBI RGD Ensembl Show fit	CD209f antigen
chr5_+_133819726 Show fit	0.01	ENSRNOT00000081075	Stil Links NCBI RGD Ensembl Show fit	Scl/Tal1 interrupting locus
chr2_-_178521038 Show fit	0.01	ENSRNOT00000033107	Rxfp1 Links NCBI RGD Ensembl Show fit	relaxin/insulin-like family peptide receptor 1
chr2_+_55775274 Show fit	0.01	ENSRNOT00000018545	C9 Links NCBI RGD Ensembl Show fit	complement C9
chr12_+_1889331 Show fit	0.01	ENSRNOT00000066281	Arhgef18 Links NCBI RGD Ensembl Show fit	Rho/Rac guanine nucleotide exchange factor 18
chr2_+_252090669 Show fit	0.01	ENSRNOT00000020656	Lpar3 Links NCBI RGD Ensembl Show fit	lysophosphatidic acid receptor 3
chr1_+_61268248 Show fit	0.01	ENSRNOT00000082730	LOC102552527 Links NCBI RGD Ensembl Show fit	zinc finger protein 420-like
chr9_+_67699379 Show fit	0.01	ENSRNOT00000091237 ENSRNOT00000088183	Ctla4 Links NCBI RGD Ensembl Show fit	cytotoxic T-lymphocyte-associated protein 4
chr1_-_67134827 Show fit	0.01	ENSRNOT00000045214	Vom1r45 Links NCBI RGD Ensembl Show fit	vomeronasal 1 receptor 45
chr1_+_84679614 Show fit	0.01	ENSRNOT00000025581	AABR07002774.1 Links NCBI RGD Ensembl Show fit
chr2_+_200076054 Show fit	0.01	ENSRNOT00000025327	Sec22b Links NCBI RGD Ensembl Show fit	SEC22 homolog B, vesicle trafficking protein
chr4_-_14490446 Show fit	0.01	ENSRNOT00000009132	Sema3c Links NCBI RGD Ensembl Show fit	semaphorin 3C
chr3_+_153491151 Show fit	0.01	ENSRNOT00000047047	Manbal Links NCBI RGD Ensembl Show fit	mannosidase beta like
chr2_-_183213228 Show fit	0.01	ENSRNOT00000067618	Trim2 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 2
chr16_+_19874034 Show fit	0.01	ENSRNOT00000023579	Mrpl34 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L34
chr7_-_123156558 Show fit	0.01	ENSRNOT00000005943	Polr3h Links NCBI RGD Ensembl Show fit	RNA polymerase III subunit H
chr9_+_30419001 Show fit	0.01	ENSRNOT00000018116	Col9a1 Links NCBI RGD Ensembl Show fit	collagen type IX alpha 1 chain
chr5_-_138462864 Show fit	0.01	ENSRNOT00000011325	Ccdc30 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 30
chr4_-_165192647 Show fit	0.00	ENSRNOT00000086461	Klra5 Links NCBI RGD Ensembl Show fit	killer cell lectin-like receptor, subfamily A, member 5
chr5_+_159484370 Show fit	0.00	ENSRNOT00000010593	Sdhb Links NCBI RGD Ensembl Show fit	succinate dehydrogenase complex iron sulfur subunit B
chr8_-_53816447 Show fit	0.00	ENSRNOT00000011454	Ttc12 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 12
chrX_-_1346181 Show fit	0.00	ENSRNOT00000042736	LOC102555453 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L12-like
chrX_-_18890090 Show fit	0.00	ENSRNOT00000041039	Klf8 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 8
chr11_-_81379871 Show fit	0.00	ENSRNOT00000089294	Eif4a2 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4A2
chr9_-_121972055 Show fit	0.00	ENSRNOT00000089735	AABR07068851.1 Links NCBI RGD Ensembl Show fit	clusterin-like protein 1
chr3_-_5617225 Show fit	0.00	ENSRNOT00000008327	Tmem8c Links NCBI RGD Ensembl Show fit	transmembrane protein 8C
chr4_+_117780533 Show fit	0.00	ENSRNOT00000021211	Tprkb Links NCBI RGD Ensembl Show fit	Tp53rk binding protein
chr14_+_113867209 Show fit	0.00	ENSRNOT00000067591	Ccdc88a Links NCBI RGD Ensembl Show fit	coiled coil domain containing 88A
chr1_+_22332090 Show fit	0.00	ENSRNOT00000091252	AABR07000663.1 Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8c (Taar8c), mRNA
chr3_-_161272460 Show fit	0.00	ENSRNOT00000020740	Acot8 Links NCBI RGD Ensembl Show fit	acyl-CoA thioesterase 8
chr5_-_138222534 Show fit	0.00	ENSRNOT00000009691	Zfp691 Links NCBI RGD Ensembl Show fit	zinc finger protein 691
chr4_+_9882904 Show fit	0.00	ENSRNOT00000016909	Dnajc2 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C2
chr3_-_52510507 Show fit	0.00	ENSRNOT00000091259	Scn1a Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel alpha subunit 1
chr4_+_45034123 Show fit	0.00	ENSRNOT00000078255	ST7 Links NCBI RGD Ensembl Show fit	suppression of tumorigenicity 7
chr18_+_58325319 Show fit	0.00	ENSRNOT00000065802 ENSRNOT00000077726	Napg Links NCBI RGD Ensembl Show fit	NSF attachment protein gamma
chr1_-_146289465 Show fit	0.00	ENSRNOT00000017362	Abhd17c Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 17C
chrX_-_40086870 Show fit	0.00	ENSRNOT00000010027	Smpx Links NCBI RGD Ensembl Show fit	small muscle protein, X-linked
chr11_-_35749464 Show fit	0.00	ENSRNOT00000078818 ENSRNOT00000078425	Erg Links NCBI RGD Ensembl Show fit	ERG, ETS transcription factor
chr14_+_77079402 Show fit	0.00	ENSRNOT00000042200	Slc2a9 Links NCBI RGD Ensembl Show fit	solute carrier family 2 member 9
chr4_+_174692331 Show fit	0.00	ENSRNOT00000011770	Plekha5 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing A5
chr7_-_135850542 Show fit	0.00	ENSRNOT00000038032	Twf1 Links NCBI RGD Ensembl Show fit	twinfilin actin-binding protein 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0034395	regulation of transcription from RNA polymerase II promoter in response to iron(GO:0034395)
0.0	0.1	GO:1904823	purine nucleobase transmembrane transport(GO:1904823)
0.0	0.0	GO:2000298	regulation of Rho-dependent protein serine/threonine kinase activity(GO:2000298)
0.0	0.1	GO:0051866	general adaptation syndrome(GO:0051866)
0.0	0.0	GO:1902304	positive regulation of potassium ion export(GO:1902304)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0070022	transforming growth factor beta receptor homodimeric complex(GO:0070022)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0015265	urea channel activity(GO:0015265)