GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Arnt Links NCBI RGD Ensembl	ENSRNOG00000031174	aryl hydrocarbon receptor nuclear translocator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Arnt	rn6_v1_chr2_+_196594303_196594303	-0.72	1.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_-_197991198 Show fit	0.13	ENSRNOT00000056322	Ciart Links NCBI RGD Ensembl Show fit	circadian associated repressor of transcription
chr2_-_197991574 Show fit	0.13	ENSRNOT00000085632	Ciart Links NCBI RGD Ensembl Show fit	circadian associated repressor of transcription
chr16_+_49462889 Show fit	0.11	ENSRNOT00000039909	Ankrd37 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 37
chr9_-_113331319 Show fit	0.04	ENSRNOT00000020681	Vapa Links NCBI RGD Ensembl Show fit	VAMP associated protein A
chr19_+_37226186 Show fit	0.04	ENSRNOT00000075933 ENSRNOT00000065013	Hsf4 Links NCBI RGD Ensembl Show fit	heat shock transcription factor 4
chr6_-_26486695 Show fit	0.04	ENSRNOT00000073236	Krtcap3 Links NCBI RGD Ensembl Show fit	keratinocyte associated protein 3
chr10_+_16542882 Show fit	0.03	ENSRNOT00000028146	Stc2 Links NCBI RGD Ensembl Show fit	stanniocalcin 2
chr5_-_50362344 Show fit	0.03	ENSRNOT00000035808	Zfp292 Links NCBI RGD Ensembl Show fit	zinc finger protein 292
chr3_+_113415774 Show fit	0.03	ENSRNOT00000056151	Serf2 Links NCBI RGD Ensembl Show fit	small EDRK-rich factor 2
chr4_-_82160240 Show fit	0.02	ENSRNOT00000038775 ENSRNOT00000058985	Hoxa4 Links NCBI RGD Ensembl Show fit	homeo box A4
chr2_+_189400696 Show fit	0.02	ENSRNOT00000046919 ENSRNOT00000089801	LOC361985 Links NCBI RGD Ensembl Show fit	similar to NICE-3
chr3_-_173953684 Show fit	0.02	ENSRNOT00000090468	Ppp1r3d Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 3D
chr17_+_9837402 Show fit	0.02	ENSRNOT00000076436	Rab24 Links NCBI RGD Ensembl Show fit	RAB24, member RAS oncogene family
chr13_-_90814119 Show fit	0.02	ENSRNOT00000011208	Tagln2 Links NCBI RGD Ensembl Show fit	transgelin 2
chr7_-_18634079 Show fit	0.02	ENSRNOT00000010031	Angptl4 Links NCBI RGD Ensembl Show fit	angiopoietin-like 4
chr5_+_141572536 Show fit	0.02	ENSRNOT00000023514	Rragc Links NCBI RGD Ensembl Show fit	Ras-related GTP binding C
chr5_+_169506138 Show fit	0.02	ENSRNOT00000014904	Rpl22 Links NCBI RGD Ensembl Show fit	ribosomal protein L22
chr4_+_95498003 Show fit	0.02	ENSRNOT00000008358	Atoh1 Links NCBI RGD Ensembl Show fit	atonal bHLH transcription factor 1
chr4_-_157679962 Show fit	0.02	ENSRNOT00000050443	Gapdh Links NCBI RGD Ensembl Show fit	glyceraldehyde-3-phosphate dehydrogenase
chr1_+_199412834 Show fit	0.02	ENSRNOT00000031891	Fus Links NCBI RGD Ensembl Show fit	fused in sarcoma RNA binding protein
chr1_+_154377247 Show fit	0.02	ENSRNOT00000092945	Picalm Links NCBI RGD Ensembl Show fit	phosphatidylinositol binding clathrin assembly protein
chr1_+_261229347 Show fit	0.02	ENSRNOT00000018485	Ubtd1 Links NCBI RGD Ensembl Show fit	ubiquitin domain containing 1
chr10_+_69737328 Show fit	0.02	ENSRNOT00000055999 ENSRNOT00000076773	Tmem132e Links NCBI RGD Ensembl Show fit	transmembrane protein 132E
chr4_-_117234928 Show fit	0.02	ENSRNOT00000073135	Pradc1 Links NCBI RGD Ensembl Show fit	protease-associated domain containing 1
chr11_-_60613718 Show fit	0.02	ENSRNOT00000002906	Atg3 Links NCBI RGD Ensembl Show fit	autophagy related 3
chr13_-_51183269 Show fit	0.01	ENSRNOT00000039540	Ppfia4 Links NCBI RGD Ensembl Show fit	PTPRF interacting protein alpha 4
chr6_+_99883959 Show fit	0.01	ENSRNOT00000010588	Fntb Links NCBI RGD Ensembl Show fit	farnesyltransferase, CAAX box, beta
chr1_+_77994203 Show fit	0.01	ENSRNOT00000002044	Napa Links NCBI RGD Ensembl Show fit	NSF attachment protein alpha
chr1_+_220114228 Show fit	0.01	ENSRNOT00000026718	Ctsf Links NCBI RGD Ensembl Show fit	cathepsin F
chr8_-_36760742 Show fit	0.01	ENSRNOT00000017307	Ddx25 Links NCBI RGD Ensembl Show fit	DEAD-box helicase 25
chr3_+_79678201 Show fit	0.01	ENSRNOT00000087604 ENSRNOT00000079709	Mtch2 Links NCBI RGD Ensembl Show fit	mitochondrial carrier 2
chr1_-_93949187 Show fit	0.01	ENSRNOT00000018956	Zfp536 Links NCBI RGD Ensembl Show fit	zinc finger protein 536
chr4_-_180234804 Show fit	0.01	ENSRNOT00000070957	Bhlhe41 Links NCBI RGD Ensembl Show fit	basic helix-loop-helix family, member e41
chr8_-_67869019 Show fit	0.01	ENSRNOT00000066009	Pias1 Links NCBI RGD Ensembl Show fit	protein inhibitor of activated STAT, 1
chr7_+_123043503 Show fit	0.01	ENSRNOT00000026258 ENSRNOT00000086355	Tef Links NCBI RGD Ensembl Show fit	TEF, PAR bZIP transcription factor
chr4_+_117235023 Show fit	0.01	ENSRNOT00000021030	Cct7 Links NCBI RGD Ensembl Show fit	chaperonin containing TCP1 subunit 7
chr10_+_83476107 Show fit	0.01	ENSRNOT00000075733	Phb Links NCBI RGD Ensembl Show fit	prohibitin
chr9_+_10428853 Show fit	0.01	ENSRNOT00000074253	Lonp1 Links NCBI RGD Ensembl Show fit	lon peptidase 1, mitochondrial
chr3_-_159802952 Show fit	0.01	ENSRNOT00000011610	Oser1 Links NCBI RGD Ensembl Show fit	oxidative stress responsive serine-rich 1
chr1_+_102849889 Show fit	0.01	ENSRNOT00000066791	Gtf2h1 Links NCBI RGD Ensembl Show fit	general transcription factor IIH subunit 1
chr5_-_139227196 Show fit	0.01	ENSRNOT00000050941	Foxo6 Links NCBI RGD Ensembl Show fit	forkhead box O6
chr2_+_115337439 Show fit	0.01	ENSRNOT00000015779	Eif5a2 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 5A2
chr17_-_9837293 Show fit	0.01	ENSRNOT00000091320 ENSRNOT00000022134	Prelid1 Links NCBI RGD Ensembl Show fit	PRELI domain containing 1
chr20_+_5455974 Show fit	0.01	ENSRNOT00000000553 ENSRNOT00000092676	Pfdn6 Links NCBI RGD Ensembl Show fit	prefoldin subunit 6
chr9_-_93377643 Show fit	0.01	ENSRNOT00000024712	Ncl Links NCBI RGD Ensembl Show fit	nucleolin
chr13_+_70174936 Show fit	0.01	ENSRNOT00000064068 ENSRNOT00000079861 ENSRNOT00000092562	Arpc5 Links NCBI RGD Ensembl Show fit	actin related protein 2/3 complex, subunit 5
chr10_-_104097812 Show fit	0.01	ENSRNOT00000004867	Sumo2 Links NCBI RGD Ensembl Show fit	small ubiquitin-like modifier 2
chr18_+_1866080 Show fit	0.01	ENSRNOT00000018646	Snrpd1 Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein D1
chr4_-_82186190 Show fit	0.01	ENSRNOT00000071729	LOC100911622 Links NCBI RGD Ensembl Show fit	homeobox protein Hox-A7-like
chr15_-_34338956 Show fit	0.01	ENSRNOT00000026914	Mdp1 Links NCBI RGD Ensembl Show fit	magnesium-dependent phosphatase 1
chr15_-_27855999 Show fit	0.01	ENSRNOT00000013225	Tmem55b Links NCBI RGD Ensembl Show fit	transmembrane protein 55B
chr8_+_63379087 Show fit	0.00	ENSRNOT00000012091 ENSRNOT00000012295	Nptn Links NCBI RGD Ensembl Show fit	neuroplastin
chr4_-_98593664 Show fit	0.00	ENSRNOT00000007927	Rpia Links NCBI RGD Ensembl Show fit	ribose 5-phosphate isomerase A
chr20_-_3401273 Show fit	0.00	ENSRNOT00000089257 ENSRNOT00000078451 ENSRNOT00000001085	Nrm Links NCBI RGD Ensembl Show fit	nurim (nuclear envelope membrane protein)
chr1_-_86948845 Show fit	0.00	ENSRNOT00000027212	Nfkbib Links NCBI RGD Ensembl Show fit	NFKB inhibitor beta
chr20_-_5455632 Show fit	0.00	ENSRNOT00000000552	Wdr46 Links NCBI RGD Ensembl Show fit	WD repeat domain 46
chr6_-_80334522 Show fit	0.00	ENSRNOT00000059316	Fbxo33 Links NCBI RGD Ensembl Show fit	F-box protein 33
chr1_-_78573374 Show fit	0.00	ENSRNOT00000090519	Arhgap35 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 35
chr1_-_129780356 Show fit	0.00	ENSRNOT00000077479	Arrdc4 Links NCBI RGD Ensembl Show fit	arrestin domain containing 4
chr5_-_173425611 Show fit	0.00	ENSRNOT00000027060	B3galt6 Links NCBI RGD Ensembl Show fit	Beta-1,3-galactosyltransferase 6
chr10_-_35833861 Show fit	0.00	ENSRNOT00000049942	Canx Links NCBI RGD Ensembl Show fit	calnexin
chr8_+_50310405 Show fit	0.00	ENSRNOT00000073507	Sik3 Links NCBI RGD Ensembl Show fit	SIK family kinase 3
chr1_-_94404211 Show fit	0.00	ENSRNOT00000019463	Uri1 Links NCBI RGD Ensembl Show fit	URI1, prefoldin-like chaperone
chr4_-_82271893 Show fit	0.00	ENSRNOT00000075005	Hoxa7 Links NCBI RGD Ensembl Show fit	homeobox A7
chr1_-_261371508 Show fit	0.00	ENSRNOT00000019978	Avpi1 Links NCBI RGD Ensembl Show fit	arginine vasopressin-induced 1
chr9_-_61634510 Show fit	0.00	ENSRNOT00000019126	Sf3b1 Links NCBI RGD Ensembl Show fit	splicing factor 3b, subunit 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0045475	locomotor rhythm(GO:0045475)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0033149	FFAT motif binding(GO:0033149)