ISMARA results: Runx3

Project

GSE49485: Hypoxia transcriptome sequencing of rat brain.

Navigation

Downloads

Results for Runx3

Z-value: 0.49

Motif logo

Transcription factors associated with Runx3

Gene Symbol	Gene ID	Gene Info
Runx3 NCBI RGD Ensembl	ENSRNOG00000054217	runt-related transcription factor 3

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Runx3	rn6_v1_chr5_+_153507093_153507093	-0.14	8.2e-01	Click!

Activity profile of Runx3 motif

Sorted Z-values of Runx3 motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_+_59533480 Show fit	0.38	ENSRNOT00000087723	Atp2a3 NCBI RGD Ensembl Show fit	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
chr1_-_72339395 Show fit	0.33	ENSRNOT00000021772	Zfp580 NCBI RGD Ensembl Show fit	zinc finger protein 580
chr4_-_170763916 Show fit	0.19	ENSRNOT00000071512	Hist1h4m NCBI RGD Ensembl Show fit	histone cluster 1, H4m
chr1_+_197659187 Show fit	0.19	ENSRNOT00000082228	LOC103690016 NCBI RGD Ensembl Show fit	serine/threonine-protein kinase SBK1
chr20_+_4966817 Show fit	0.16	ENSRNOT00000081527 ENSRNOT00000081265	Lsm2 NCBI RGD Ensembl Show fit	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
chr20_+_4822935 Show fit	0.14	ENSRNOT00000077200	Nfkbil1 NCBI RGD Ensembl Show fit	NFKB inhibitor like 1
chr5_+_137371825 Show fit	0.12	ENSRNOT00000072816	Tmem125 NCBI RGD Ensembl Show fit	transmembrane protein 125
chr20_-_3386048 Show fit	0.12	ENSRNOT00000089550 ENSRNOT00000065025	Dhx16 NCBI RGD Ensembl Show fit	DEAH-box helicase 16
chr2_+_116372519 Show fit	0.11	ENSRNOT00000031730	Lrrc34 NCBI RGD Ensembl Show fit	leucine rich repeat containing 34
chr3_+_45683993 Show fit	0.10	ENSRNOT00000038983	Tanc1 NCBI RGD Ensembl Show fit	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1

Showing 1 to 10 of 87 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Runx3

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Total log-likelihood	Term	Description
0.4	GO:0045653	negative regulation of megakaryocyte differentiation(GO:0045653)
0.1	GO:0097069	cellular response to thyroxine stimulus(GO:0097069)
0.1	GO:0071630	nucleus-associated proteasomal ubiquitin-dependent protein catabolic process(GO:0071630)
0.1	GO:0031665	negative regulation of lipopolysaccharide-mediated signaling pathway(GO:0031665)
0.1	GO:0010992	ubiquitin homeostasis(GO:0010992)
0.0	GO:0071049	nuclear mRNA surveillance of mRNA 3'-end processing(GO:0071031) nuclear polyadenylation-dependent tRNA catabolic process(GO:0071038) nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription(GO:0071049)

Showing 1 to 6 of 6 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Total log-likelihood	Term	Description
0.4	GO:0000788	nuclear nucleosome(GO:0000788)
0.4	GO:0033017	sarcoplasmic reticulum membrane(GO:0033017)
0.2	GO:1990726	Lsm1-7-Pat1 complex(GO:1990726)
0.1	GO:0043625	delta DNA polymerase complex(GO:0043625)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	GO:0005388	calcium-transporting ATPase activity(GO:0005388)
0.0	0.0	GO:0008532	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity(GO:0008532)

Showing 1 to 2 of 2 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	REACTOME PRE NOTCH PROCESSING IN GOLGI	Genes involved in Pre-NOTCH Processing in Golgi
0.0	0.2	REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE	Genes involved in mRNA Decay by 5' to 3' Exoribonuclease

Showing 1 to 2 of 2 entries

Results for Runx3

Z-value: 0.49

Motif logo

Transcription factors associated with Runx3

Activity-expression correlation:

Activity profile of Runx3 motif

Sorted Z-values of Runx3 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Runx3

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: