GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Bcl6b Links NCBI RGD Ensembl	ENSRNOG00000059956	B-cell CLL/lymphoma 6B

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Bcl6b	rn6_v1_chr10_-_56839437_56839437	0.58	3.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_144646308 Show fit	0.07	ENSRNOT00000078337 ENSRNOT00000093407	Dclk1 Links NCBI RGD Ensembl Show fit	doublecortin-like kinase 1
chr11_+_69739384 Show fit	0.07	ENSRNOT00000016340	Kalrn Links NCBI RGD Ensembl Show fit	kalirin, RhoGEF kinase
chr3_-_80601410 Show fit	0.06	ENSRNOT00000022841	Atg13 Links NCBI RGD Ensembl Show fit	autophagy related 13
chr3_+_14192061 Show fit	0.05	ENSRNOT00000092782	Rn60_3_0143.1 Links NCBI RGD Ensembl Show fit
chr14_+_63405408 Show fit	0.05	ENSRNOT00000086658	AABR07015559.1 Links NCBI RGD Ensembl Show fit
chr16_-_81945127 Show fit	0.05	ENSRNOT00000023352	Mcf2l Links NCBI RGD Ensembl Show fit	MCF.2 cell line derived transforming sequence-like
chr17_+_21984325 Show fit	0.05	ENSRNOT00000088725	AABR07027267.1 Links NCBI RGD Ensembl Show fit
chr16_+_49293243 Show fit	0.05	ENSRNOT00000049830	AC130162.1 Links NCBI RGD Ensembl Show fit
chr1_-_65863037 Show fit	0.05	ENSRNOT00000075269	AABR07002068.1 Links NCBI RGD Ensembl Show fit
chr1_+_254530121 Show fit	0.04	ENSRNOT00000089627	AC080157.1 Links NCBI RGD Ensembl Show fit
chr3_-_119330345 Show fit	0.04	ENSRNOT00000077398 ENSRNOT00000079191	Trpm7 Links NCBI RGD Ensembl Show fit	transient receptor potential cation channel, subfamily M, member 7
chr5_+_139385429 Show fit	0.04	ENSRNOT00000078622	Scmh1 Links NCBI RGD Ensembl Show fit	sex comb on midleg homolog 1 (Drosophila)
chrX_+_22302485 Show fit	0.04	ENSRNOT00000082902	Kdm5c Links NCBI RGD Ensembl Show fit	lysine demethylase 5C
chr12_-_38782010 Show fit	0.04	ENSRNOT00000001813	Wdr66 Links NCBI RGD Ensembl Show fit	WD repeat domain 66
chr9_-_60672246 Show fit	0.03	ENSRNOT00000017761	Hecw2 Links NCBI RGD Ensembl Show fit	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
chr13_+_83073544 Show fit	0.03	ENSRNOT00000066119 ENSRNOT00000079796 ENSRNOT00000077070	Dpt Links NCBI RGD Ensembl Show fit	dermatopontin
chr1_+_87790104 Show fit	0.03	ENSRNOT00000074580	LOC103690114 Links NCBI RGD Ensembl Show fit	zinc finger protein 383-like
chr10_+_66732390 Show fit	0.03	ENSRNOT00000089538	Nf1 Links NCBI RGD Ensembl Show fit	neurofibromin 1
chr11_-_11585078 Show fit	0.03	ENSRNOT00000088878	Robo2 Links NCBI RGD Ensembl Show fit	roundabout guidance receptor 2
chr2_-_196177775 Show fit	0.03	ENSRNOT00000028553	Zfp687 Links NCBI RGD Ensembl Show fit	zinc finger protein 687
chr13_+_83073866 Show fit	0.03	ENSRNOT00000075996	Dpt Links NCBI RGD Ensembl Show fit	dermatopontin
chr2_-_211322719 Show fit	0.03	ENSRNOT00000027493	RGD1310209 Links NCBI RGD Ensembl Show fit	similar to KIAA1324 protein
chr10_-_103685844 Show fit	0.03	ENSRNOT00000064284	Cd300lf Links NCBI RGD Ensembl Show fit	Cd300 molecule-like family member F
chr4_+_70252366 Show fit	0.03	ENSRNOT00000073039	Chl1 Links NCBI RGD Ensembl Show fit	cell adhesion molecule L1-like
chr19_-_37021958 Show fit	0.03	ENSRNOT00000084366	AABR07072639.2 Links NCBI RGD Ensembl Show fit
chr2_-_165600748 Show fit	0.02	ENSRNOT00000013216	Ift80 Links NCBI RGD Ensembl Show fit	intraflagellar transport 80
chr1_+_8310577 Show fit	0.02	ENSRNOT00000015131	Hivep2 Links NCBI RGD Ensembl Show fit	human immunodeficiency virus type I enhancer binding protein 2
chr10_-_11935382 Show fit	0.02	ENSRNOT00000010059	Zfp174 Links NCBI RGD Ensembl Show fit	zinc finger protein 174
chr8_+_61659445 Show fit	0.02	ENSRNOT00000023831	Ptpn9 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 9
chr18_+_30869628 Show fit	0.02	ENSRNOT00000060470	Pcdhgb4 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily B, 4
chr13_+_112031594 Show fit	0.02	ENSRNOT00000008440	Lamb3 Links NCBI RGD Ensembl Show fit	laminin subunit beta 3
chrX_+_135187468 Show fit	0.02	ENSRNOT00000006805	Bcorl1 Links NCBI RGD Ensembl Show fit	BCL6 co-repressor-like 1
chr3_-_2060167 Show fit	0.02	ENSRNOT00000066777	Ehmt1 Links NCBI RGD Ensembl Show fit	euchromatic histone lysine methyltransferase 1
chr1_-_214394411 Show fit	0.02	ENSRNOT00000071528	LOC100911365 Links NCBI RGD Ensembl Show fit	Parkinson disease 7 domain-containing protein 1-like
chr15_+_37171052 Show fit	0.02	ENSRNOT00000011684	Zmym2 Links NCBI RGD Ensembl Show fit	zinc finger MYM-type containing 2
chr1_+_143036218 Show fit	0.02	ENSRNOT00000025797	Pde8a Links NCBI RGD Ensembl Show fit	phosphodiesterase 8A
chr15_-_37983882 Show fit	0.02	ENSRNOT00000087978	Lats2 Links NCBI RGD Ensembl Show fit	large tumor suppressor kinase 2
chr8_-_67040005 Show fit	0.01	ENSRNOT00000038641	Glce Links NCBI RGD Ensembl Show fit	glucuronic acid epimerase
chr10_-_110274768 Show fit	0.01	ENSRNOT00000054931	Sectm1a Links NCBI RGD Ensembl Show fit	secreted and transmembrane 1A
chr7_+_42269784 Show fit	0.01	ENSRNOT00000008471 ENSRNOT00000007231	Kitlg Links NCBI RGD Ensembl Show fit	KIT ligand
chr3_-_104502471 Show fit	0.01	ENSRNOT00000040306	Ryr3 Links NCBI RGD Ensembl Show fit	ryanodine receptor 3
chrX_+_20423401 Show fit	0.01	ENSRNOT00000093162	Wnk3 Links NCBI RGD Ensembl Show fit	WNK lysine deficient protein kinase 3
chr16_-_20807070 Show fit	0.01	ENSRNOT00000072536	Comp Links NCBI RGD Ensembl Show fit	cartilage oligomeric matrix protein
chr4_+_114935970 Show fit	0.01	ENSRNOT00000082336	Slc4a5 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 5
chr12_+_25411207 Show fit	0.01	ENSRNOT00000077189 ENSRNOT00000040356	Gtf2i Links NCBI RGD Ensembl Show fit	general transcription factor II I
chr2_+_34374158 Show fit	0.01	ENSRNOT00000016997	Adamts6 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 6
chr1_+_64740487 Show fit	0.01	ENSRNOT00000081213	LOC103691005 Links NCBI RGD Ensembl Show fit	zinc finger protein 679-like
chr2_+_211546560 Show fit	0.01	ENSRNOT00000033443	Aknad1 Links NCBI RGD Ensembl Show fit	AKNA domain containing 1
chr4_-_17594598 Show fit	0.01	ENSRNOT00000008936	Sema3e Links NCBI RGD Ensembl Show fit	semaphorin 3E
chr16_+_6078122 Show fit	0.01	ENSRNOT00000021407	Chdh Links NCBI RGD Ensembl Show fit	choline dehydrogenase
chr3_+_97723901 Show fit	0.01	ENSRNOT00000080416	Mpped2 Links NCBI RGD Ensembl Show fit	metallophosphoesterase domain containing 2
chr3_+_170354141 Show fit	0.01	ENSRNOT00000005901	Fam210b Links NCBI RGD Ensembl Show fit	family with sequence similarity 210, member B
chr18_+_30527705 Show fit	0.01	ENSRNOT00000027168	Pcdhb14 Links NCBI RGD Ensembl Show fit	protocadherin beta 14
chr2_+_54660722 Show fit	0.01	ENSRNOT00000060376	Mroh2b Links NCBI RGD Ensembl Show fit	maestro heat-like repeat family member 2B
chr16_-_71237118 Show fit	0.01	ENSRNOT00000066974	Nsd3 Links NCBI RGD Ensembl Show fit	nuclear receptor binding SET domain protein 3
chr1_-_239265997 Show fit	0.01	ENSRNOT00000037500	RGD1359158 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1110059E24
chr2_+_104416972 Show fit	0.01	ENSRNOT00000017125	Trim55 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 55
chr12_-_24578761 Show fit	0.01	ENSRNOT00000076209	Tbl2 Links NCBI RGD Ensembl Show fit	transducin (beta)-like 2
chr4_+_109467272 Show fit	0.01	ENSRNOT00000008212	Reg3b Links NCBI RGD Ensembl Show fit	regenerating family member 3 beta
chr11_-_11585765 Show fit	0.01	ENSRNOT00000066439	Robo2 Links NCBI RGD Ensembl Show fit	roundabout guidance receptor 2
chr3_+_134440195 Show fit	0.01	ENSRNOT00000072928	AABR07054000.1 Links NCBI RGD Ensembl Show fit
chr19_-_29968424 Show fit	0.01	ENSRNOT00000024981	Inpp4b Links NCBI RGD Ensembl Show fit	inositol polyphosphate-4-phosphatase type II B
chrX_+_65271366 Show fit	0.01	ENSRNOT00000093499	Msn Links NCBI RGD Ensembl Show fit	moesin
chr20_+_5933303 Show fit	0.01	ENSRNOT00000000617	Mapk14 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase 14
chr5_-_113532878 Show fit	0.01	ENSRNOT00000010173	Caap1 Links NCBI RGD Ensembl Show fit	caspase activity and apoptosis inhibitor 1
chr6_+_36941596 Show fit	0.00	ENSRNOT00000083383	Smc6 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 6
chr3_-_60611924 Show fit	0.00	ENSRNOT00000068745	Chn1 Links NCBI RGD Ensembl Show fit	chimerin 1
chr15_-_34392066 Show fit	0.00	ENSRNOT00000027315	Tgm1 Links NCBI RGD Ensembl Show fit	transglutaminase 1
chr12_-_650376 Show fit	0.00	ENSRNOT00000001468	N4bp2l2 Links NCBI RGD Ensembl Show fit	NEDD4 binding protein 2-like 2
chr16_+_74886719 Show fit	0.00	ENSRNOT00000089265	Atp7b Links NCBI RGD Ensembl Show fit	ATPase copper transporting beta
chr12_+_24148567 Show fit	0.00	ENSRNOT00000077378 ENSRNOT00000045157	Ccl24 Links NCBI RGD Ensembl Show fit	C-C motif chemokine ligand 24
chr2_+_165601007 Show fit	0.00	ENSRNOT00000013931	Smc4 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 4
chr10_+_72147816 Show fit	0.00	ENSRNOT00000090085	LOC102553386 Links NCBI RGD Ensembl Show fit	SUMO-conjugating enzyme UBC9-like
chr18_-_85980833 Show fit	0.00	ENSRNOT00000058179	Socs6 Links NCBI RGD Ensembl Show fit	suppressor of cytokine signaling 6
chr1_+_88324339 Show fit	0.00	ENSRNOT00000072762	LOC102547059 Links NCBI RGD Ensembl Show fit	zinc finger protein 420-like
chr1_-_213957535 Show fit	0.00	ENSRNOT00000073220	Pddc1 Links NCBI RGD Ensembl Show fit	Parkinson disease 7 domain containing 1
chr7_-_134722215 Show fit	0.00	ENSRNOT00000036750	Prickle1 Links NCBI RGD Ensembl Show fit	prickle planar cell polarity protein 1
chr1_-_214067657 Show fit	0.00	ENSRNOT00000044390	LOC100911881 Links NCBI RGD Ensembl Show fit	chitinase domain-containing protein 1-like
chr9_+_115916907 Show fit	0.00	ENSRNOT00000023226	Lama1 Links NCBI RGD Ensembl Show fit	laminin subunit alpha 1
chr1_-_44615760 Show fit	0.00	ENSRNOT00000022148	Nox3 Links NCBI RGD Ensembl Show fit	NADPH oxidase 3
chr1_-_267463694 Show fit	0.00	ENSRNOT00000084851 ENSRNOT00000016645	Col17a1 Links NCBI RGD Ensembl Show fit	collagen type XVII alpha 1 chain

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0098989	behavioral response to chemical pain(GO:0061366) behavioral response to formalin induced pain(GO:0061368) NMDA selective glutamate receptor signaling pathway(GO:0098989)