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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Hmbox1

Z-value: 0.19

Motif logo

Transcription factors associated with Hmbox1

Gene Symbol Gene ID Gene Info
ENSRNOG00000013326 homeobox containing 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hmbox1rn6_v1_chr15_-_48284548_482845480.771.2e-01Click!

Activity profile of Hmbox1 motif

Sorted Z-values of Hmbox1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr10_+_106712127 0.08 ENSRNOT00000040629
trinucleotide repeat containing 6C
chr10_-_65200109 0.07 ENSRNOT00000030501
NUFIP2, FMR1 interacting protein 2
chr8_+_29453643 0.06 ENSRNOT00000090643
opioid binding protein/cell adhesion molecule-like
chr2_-_157058194 0.06 ENSRNOT00000076409

chr1_+_213583606 0.06 ENSRNOT00000088899

chr20_-_2678141 0.05 ENSRNOT00000072377
ENSRNOT00000083833
complement component 4A (Rodgers blood group)
chr3_+_101010899 0.05 ENSRNOT00000073258
lin-7 homolog C, crumbs cell polarity complex component
chr1_+_141767940 0.05 ENSRNOT00000064034
zinc finger protein 710
chr20_-_4508197 0.05 ENSRNOT00000086027
ENSRNOT00000000514
complement component 4A (Rodgers blood group)
chr9_+_121831716 0.05 ENSRNOT00000056250
ENSRNOT00000056251
YES proto-oncogene 1, Src family tyrosine kinase
chr1_-_71173216 0.04 ENSRNOT00000020523
zinc finger protein 28
chr5_+_169288871 0.04 ENSRNOT00000055466
TNF receptor superfamily member 25
chr6_-_54059119 0.04 ENSRNOT00000005521
histone deacetylase 9
chr20_+_44220840 0.04 ENSRNOT00000047194
tubulin, epsilon 1
chr1_+_219964429 0.04 ENSRNOT00000088288
spectrin, beta, non-erythrocytic 2
chr6_+_106052212 0.04 ENSRNOT00000010626
signal-induced proliferation-associated 1 like 1
chr4_-_157704596 0.04 ENSRNOT00000083016
non-SMC condensin I complex, subunit D2
chr4_-_126644895 0.04 ENSRNOT00000017384
ENSRNOT00000072624
leucine-rich repeats and immunoglobulin-like domains 1
chr18_-_57866741 0.04 ENSRNOT00000025790
F-box protein 38
chr6_-_15191660 0.04 ENSRNOT00000092654
neurexin 1
chr14_-_114484127 0.04 ENSRNOT00000056706
echinoderm microtubule associated protein like 6
chr6_-_115513354 0.03 ENSRNOT00000005881
stonin 2
chr15_-_77736892 0.03 ENSRNOT00000057924
protocadherin 9
chr3_+_95711555 0.03 ENSRNOT00000006302
paired box 6
chr8_-_114010277 0.03 ENSRNOT00000045087
ATPase secretory pathway Ca2+ transporting 1
chr4_+_152430187 0.03 ENSRNOT00000084520
RAD52 homolog, DNA repair protein
chr1_-_204087001 0.03 ENSRNOT00000051853
carboxypeptidase X (M14 family), member 2
chr8_-_71337746 0.03 ENSRNOT00000021554
zinc finger protein 609
chr15_-_61648267 0.03 ENSRNOT00000071805
N(alpha)-acetyltransferase 16, NatA auxiliary subunit
chrX_+_124321551 0.03 ENSRNOT00000074486
transcriptional regulator Kaiso-like
chr3_+_8873933 0.03 ENSRNOT00000030996
nucleoporin 188
chr4_-_118578815 0.03 ENSRNOT00000080502
annexin A4
chr8_+_116343096 0.03 ENSRNOT00000022092
interferon-related developmental regulator 2
chr17_-_55300998 0.03 ENSRNOT00000064331
supervillin
chr2_+_30664639 0.03 ENSRNOT00000076372
ENSRNOT00000076294
ENSRNOT00000076434
ENSRNOT00000076484
TATA-box binding protein associated factor 9
chr6_-_55001464 0.03 ENSRNOT00000006618
aryl hydrocarbon receptor
chr2_-_211690716 0.03 ENSRNOT00000027690
fibronectin type III domain containing 7
chr5_-_151113643 0.03 ENSRNOT00000077360
family with sequence similarity 76, member A
chr1_-_13915594 0.03 ENSRNOT00000015927
ARFGEF family member 3
chr4_-_129544429 0.03 ENSRNOT00000091507
ENSRNOT00000083461
ENSRNOT00000087215
TATA element modulatory factor 1
chr5_+_169519212 0.03 ENSRNOT00000024732
chromodomain helicase DNA binding protein 5
chr20_+_20236151 0.03 ENSRNOT00000079630
ankyrin 3
chr2_-_165600748 0.03 ENSRNOT00000013216
intraflagellar transport 80
chr10_-_82852660 0.03 ENSRNOT00000005641
pyruvate dehydrogenase kinase 2
chr18_-_1390190 0.03 ENSRNOT00000061777
Rho-associated coiled-coil containing protein kinase 1
chr18_-_1389929 0.03 ENSRNOT00000051362
Rho-associated coiled-coil containing protein kinase 1
chr10_+_70629250 0.02 ENSRNOT00000013687
RAS-like, family 10, member B
chr8_-_8524643 0.02 ENSRNOT00000009418
contactin 5
chr8_-_73122740 0.02 ENSRNOT00000012026
talin 2
chr13_+_90244681 0.02 ENSRNOT00000078162
CD84 molecule
chr6_-_131648661 0.02 ENSRNOT00000057179
histone-lysine N-methyltransferase setd3-like
chr19_-_37303788 0.02 ENSRNOT00000084734
formin homology 2 domain containing 1
chr14_+_39964588 0.02 ENSRNOT00000003240
gamma-aminobutyric acid type A receptor gamma 1 subunit
chr3_+_38559914 0.02 ENSRNOT00000085545
formin-like 2
chr8_-_84506328 0.02 ENSRNOT00000064754
muscular LMNA-interacting protein
chr13_-_89594738 0.02 ENSRNOT00000004641
translocase of outer mitochondrial membrane 40 like
chr10_-_52290657 0.02 ENSRNOT00000005293
mitogen activated protein kinase kinase 4
chr14_+_106153575 0.02 ENSRNOT00000010264
VPS54 GARP complex subunit
chr5_+_118574801 0.02 ENSRNOT00000035949
ubiquitin-conjugating enzyme E2U (putative)
chr15_-_93667116 0.02 ENSRNOT00000093184
F-box and leucine-rich repeat protein 3
chr2_+_250995517 0.02 ENSRNOT00000018905
outer dense fiber of sperm tails 2-like
chr15_-_37056892 0.02 ENSRNOT00000047731
zinc finger MYM-type containing 5
chr15_+_47470863 0.02 ENSRNOT00000072438
similar to Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor)
chr17_-_78499881 0.02 ENSRNOT00000079260
family with sequence similarity 107, member B
chr7_-_143863186 0.02 ENSRNOT00000017096
retinoic acid receptor, gamma
chr10_-_56270640 0.02 ENSRNOT00000056918
Cd68 molecule
chr19_-_601469 0.02 ENSRNOT00000016462
pyruvate dehyrogenase phosphatase catalytic subunit 2
chr8_+_107882219 0.02 ENSRNOT00000019902
DAZ interacting zinc finger protein 1-like
chr18_+_30840868 0.02 ENSRNOT00000027026
protocadherin gamma subfamily A, 5
chr1_-_215284548 0.02 ENSRNOT00000090375
cortactin
chr20_-_4316715 0.02 ENSRNOT00000031704
complement C4B (Chido blood group)
chr11_-_86276430 0.02 ENSRNOT00000075164
histone cell cycle regulator
chr2_-_227582895 0.02 ENSRNOT00000020574
methyltransferase like 14
chr6_+_92229686 0.02 ENSRNOT00000046085
atlastin GTPase 1
chr9_+_117538009 0.02 ENSRNOT00000022878
erythrocyte membrane protein band 4.1-like 3
chr7_-_117880289 0.02 ENSRNOT00000052227
Rho GTPase activating protein 39
chr16_+_82184387 0.02 ENSRNOT00000089329
ENSRNOT00000068416
tubulin, gamma complex associated protein 3
chr16_+_70644474 0.02 ENSRNOT00000045955
ribosomal protein S28-like
chr8_+_103673411 0.01 ENSRNOT00000049967
ATR serine/threonine kinase
chr7_+_120106901 0.01 ENSRNOT00000063876
golgi associated, gamma adaptin ear containing, ARF binding protein 1
chr12_+_19314251 0.01 ENSRNOT00000001827
adaptor-related protein complex 4, mu 1 subunit
chr13_+_80464348 0.01 ENSRNOT00000076324
vesicle-associated membrane protein 4
chr8_-_47404010 0.01 ENSRNOT00000038647
transmembrane protein 136
chr19_-_27464805 0.01 ENSRNOT00000039467
origin recognition complex, subunit 6
chr14_+_4125380 0.01 ENSRNOT00000002882
zinc finger protein 644
chr15_+_34328851 0.01 ENSRNOT00000026819
testis-specific serine kinase 4
chr1_-_40921508 0.01 ENSRNOT00000026433
zinc finger and BTB domain containing 2
chr6_-_75589257 0.01 ENSRNOT00000006030
E2F-associated phosphoprotein
chr8_+_42443442 0.01 ENSRNOT00000015986
von Willebrand factor A domain containing 5A
chr6_+_26686205 0.01 ENSRNOT00000082623
solute carrier family 5 member 6
chr8_-_96516975 0.01 ENSRNOT00000067996
similar to RIKEN cDNA 4930579C12 gene
chr16_+_50016857 0.01 ENSRNOT00000035781
toll-like receptor 3
chr2_-_120316357 0.01 ENSRNOT00000065469
coiled-coil domain containing 39
chr6_+_26686033 0.01 ENSRNOT00000081167
solute carrier family 5 member 6
chr5_+_104394119 0.01 ENSRNOT00000093557
ENSRNOT00000093462
ADAMTS-like 1
chrX_+_106390759 0.01 ENSRNOT00000049375
basic helix-loop-helix domain containing, class B, 9
chr19_-_19913605 0.01 ENSRNOT00000020816
CTD nuclear envelope phosphatase 1 regulatory subunit 1
chrX_-_31799560 0.01 ENSRNOT00000044103
phosphatidylinositol glycan anchor biosynthesis, class A
chr13_-_95250235 0.01 ENSRNOT00000085648
AKT serine/threonine kinase 3
chr4_+_117780533 0.01 ENSRNOT00000021211
Tp53rk binding protein
chr17_-_69711689 0.01 ENSRNOT00000041925
aldo-keto reductase family 1, member C12
chr7_-_117257402 0.01 ENSRNOT00000081021
plectin
chr13_-_48056394 0.01 ENSRNOT00000038151
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon
chr18_-_58097316 0.01 ENSRNOT00000088527

chrX_-_70461553 0.01 ENSRNOT00000076110
ENSRNOT00000003872
ENSRNOT00000076812
PDZ domain containing 11
chr12_-_23021517 0.01 ENSRNOT00000041654
myosin light chain 10
chr2_-_89498395 0.01 ENSRNOT00000068507

chr1_-_211196868 0.01 ENSRNOT00000022714
mitogen-activated protein kinase 1 interacting protein 1
chr4_-_8214555 0.01 ENSRNOT00000084050
ENSRNOT00000076642
lysine methyltransferase 2E
chr8_+_59769994 0.01 ENSRNOT00000020309
F-box protein 22
chr5_+_172488708 0.01 ENSRNOT00000019930
MORN repeat containing 1
chr2_+_165601007 0.01 ENSRNOT00000013931
structural maintenance of chromosomes 4
chr20_-_50564987 0.00 ENSRNOT00000034485
ENSRNOT00000064466
lin-28 homolog B
chr12_-_650376 0.00 ENSRNOT00000001468
NEDD4 binding protein 2-like 2
chrX_+_40460047 0.00 ENSRNOT00000010970
phosphate regulating endopeptidase homolog, X-linked
chr3_-_13896838 0.00 ENSRNOT00000025399
F-box and WD repeat domain containing 2
chr2_-_120316600 0.00 ENSRNOT00000084521
coiled-coil domain containing 39
chr6_-_105261549 0.00 ENSRNOT00000009122
synaptojanin 2 binding protein
chr5_+_25168295 0.00 ENSRNOT00000020245
fibrinogen silencer binding protein
chr2_+_256964860 0.00 ENSRNOT00000073547
interferon-induced protein 44-like
chr5_+_126976456 0.00 ENSRNOT00000014275
NDC1 transmembrane nucleoporin
chr2_-_233743866 0.00 ENSRNOT00000087062
glutamyl aminopeptidase
chr13_-_78885464 0.00 ENSRNOT00000003828
aspartyl-tRNA synthetase 2 (mitochondrial)
chr7_-_119689938 0.00 ENSRNOT00000000200
transmembrane protease, serine 6
chr16_+_6970342 0.00 ENSRNOT00000061294
ENSRNOT00000048344
inter-alpha-trypsin inhibitor heavy chain family, member 4
chr8_-_106617597 0.00 ENSRNOT00000070953
mitochondrial ribosomal protein S22
chr12_-_19314016 0.00 ENSRNOT00000001825
minichromosome maintenance complex component 7
chr3_+_47439076 0.00 ENSRNOT00000011794
TRAF family member-associated NFKB activator
chr7_+_94795214 0.00 ENSRNOT00000005722
DEP domain containing MTOR-interacting protein
chr18_+_29124428 0.00 ENSRNOT00000073131
IgA-inducing protein
chr6_+_75996643 0.00 ENSRNOT00000052076
signal recognition particle 54A
chr3_-_166994286 0.00 ENSRNOT00000081593
zinc finger protein 217
chr20_+_28078500 0.00 ENSRNOT00000030005
coiled-coil domain containing 138
chr4_-_133131953 0.00 ENSRNOT00000089177
SHQ1, H/ACA ribonucleoprotein assembly factor

Network of associatons between targets according to the STRING database.

First level regulatory network of Hmbox1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.0 GO:0032474 otolith morphogenesis(GO:0032474)
0.0 0.0 GO:0021917 pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)
0.0 0.0 GO:0032472 Golgi calcium ion transport(GO:0032472)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0097025 MPP7-DLG1-LIN7 complex(GO:0097025)
0.0 0.0 GO:0044611 nuclear pore inner ring(GO:0044611)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0097016 L27 domain binding(GO:0097016)