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GSE49485: Hypoxia transcriptome sequencing of rat brain.
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Results for Scrt1
Z-value: 0.43
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Transcription factors associated with Scrt1
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Scrt1 | rn6_v1_chr7_-_117587103_117587103 | -0.61 | 2.7e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr1_-_15301998 Show fit | 0.26 |
ENSRNOT00000016400
|
solute carrier family 35, member D3 |
|
| chr16_-_19942343 Show fit | 0.18 |
ENSRNOT00000087162
ENSRNOT00000091906 |
bone marrow stromal cell antigen 2 |
|
| chr1_+_205842489 Show fit | 0.14 |
ENSRNOT00000081610
|
fibronectin type 3 and ankyrin repeat domains 1 |
|
| chr1_+_53220397 Show fit | 0.13 |
ENSRNOT00000089989
|
|
|
| chr10_+_90550147 Show fit | 0.12 |
ENSRNOT00000032944
|
frizzled class receptor 2 |
|
| chr1_-_82004538 Show fit | 0.12 |
ENSRNOT00000087572
|
POU class 2 homeobox 2 |
|
| chr1_-_120893997 Show fit | 0.12 |
ENSRNOT00000081028
|
|
|
| chr1_+_78820262 Show fit | 0.10 |
ENSRNOT00000022441
|
G protein subunit gamma 8 |
|
| chr10_-_48860902 Show fit | 0.10 |
ENSRNOT00000004127
|
centromere protein V |
|
| chr17_-_9791781 Show fit | 0.09 |
ENSRNOT00000090536
|
regulator of G-protein signaling 14 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Scrt1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0070863 | positive regulation of protein exit from endoplasmic reticulum(GO:0070863) |
| 0.1 | 0.2 | GO:0010070 | zygote asymmetric cell division(GO:0010070) |
| 0.1 | 0.2 | GO:0002731 | negative regulation of dendritic cell cytokine production(GO:0002731) regulation of intracellular transport of viral material(GO:1901252) |
| 0.1 | 0.2 | GO:0002380 | immunoglobulin secretion involved in immune response(GO:0002380) |
| 0.0 | 0.1 | GO:0007199 | G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger(GO:0007199) |
| 0.0 | 0.1 | GO:0051695 | actin filament uncapping(GO:0051695) |
| 0.0 | 0.1 | GO:0048007 | antigen processing and presentation of lipid antigen via MHC class Ib(GO:0048003) antigen processing and presentation, exogenous lipid antigen via MHC class Ib(GO:0048007) |
| 0.0 | 0.1 | GO:0019236 | response to pheromone(GO:0019236) |
| 0.0 | 0.1 | GO:0002585 | positive regulation of antigen processing and presentation of peptide antigen(GO:0002585) detection of peptidoglycan(GO:0032499) |
| 0.0 | 0.1 | GO:0006030 | chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:1990907 | beta-catenin-TCF complex(GO:1990907) |
| 0.0 | 0.1 | GO:0020003 | symbiont-containing vacuole(GO:0020003) |
| 0.0 | 0.1 | GO:0070876 | SOSS complex(GO:0070876) |
| 0.0 | 0.0 | GO:0032807 | DNA ligase IV complex(GO:0032807) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
| 0.0 | 0.2 | GO:0005092 | GDP-dissociation inhibitor activity(GO:0005092) |
| 0.0 | 0.1 | GO:0016403 | dimethylargininase activity(GO:0016403) |
| 0.0 | 0.1 | GO:0071723 | lipopeptide binding(GO:0071723) |
| 0.0 | 0.1 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.0 | 0.1 | GO:0031694 | alpha-2A adrenergic receptor binding(GO:0031694) |
| 0.0 | 0.1 | GO:0051373 | FATZ binding(GO:0051373) |
| 0.0 | 0.1 | GO:0001087 | transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087) |
| 0.0 | 0.1 | GO:0019002 | GMP binding(GO:0019002) |
| 0.0 | 0.1 | GO:0015111 | iodide transmembrane transporter activity(GO:0015111) |