GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Six3 Links NCBI RGD Ensembl	ENSRNOG00000057031	SIX homeobox 3
Six1 Links NCBI RGD Ensembl	ENSRNOG00000022777	SIX homeobox 1
Six2 Links NCBI RGD Ensembl	ENSRNOG00000058827	SIX homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Six2	rn6_v1_chr6_-_8956276_8956276	0.49	4.0e-01	Click!
Six1	rn6_v1_chr6_-_95934296_95934296	-0.29	6.3e-01	Click!
Six3	rn6_v1_chr6_+_8886591_8886730	-0.12	8.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr13_-_111948753 Show fit	0.24	ENSRNOT00000048074	Hsd11b1 Links NCBI RGD Ensembl Show fit	hydroxysteroid 11-beta dehydrogenase 1
chr6_+_64224861 Show fit	0.22	ENSRNOT00000093159 ENSRNOT00000093664	Pnpla8 Links NCBI RGD Ensembl Show fit	patatin-like phospholipase domain containing 8
chrX_+_19854836 Show fit	0.20	ENSRNOT00000075010	AABR07037395.2 Links NCBI RGD Ensembl Show fit
chr5_+_173148884 Show fit	0.16	ENSRNOT00000041753	LOC100364191 Links NCBI RGD Ensembl Show fit	hCG1994130-like
chr10_+_14492844 Show fit	0.14	ENSRNOT00000023615	Clcn7 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 7
chrX_-_114232939 Show fit	0.13	ENSRNOT00000042639	Ammecr1 Links NCBI RGD Ensembl Show fit	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
chr8_-_76940094 Show fit	0.10	ENSRNOT00000082709 ENSRNOT00000084313	Rnf111 Links NCBI RGD Ensembl Show fit	ring finger protein 111
chr10_-_36322356 Show fit	0.09	ENSRNOT00000000248	Zfp354c Links NCBI RGD Ensembl Show fit	zinc finger protein 354C
chr3_-_93789617 Show fit	0.08	ENSRNOT00000078616	Caprin1 Links NCBI RGD Ensembl Show fit	cell cycle associated protein 1
chr16_-_19544727 Show fit	0.08	ENSRNOT00000074514	Zfp617 Links NCBI RGD Ensembl Show fit	zinc finger protein 617
chr6_+_86823684 Show fit	0.07	ENSRNOT00000086081 ENSRNOT00000006574	Fancm Links NCBI RGD Ensembl Show fit	Fanconi anemia, complementation group M
chr5_+_124442293 Show fit	0.07	ENSRNOT00000041922	RGD1564074 Links NCBI RGD Ensembl Show fit	similar to novel protein
chr5_+_9230984 Show fit	0.06	ENSRNOT00000009136	Vcpip1 Links NCBI RGD Ensembl Show fit	valosin containing protein interacting protein 1
chr2_-_195935878 Show fit	0.06	ENSRNOT00000028440	Cgn Links NCBI RGD Ensembl Show fit	cingulin
chr1_+_201981357 Show fit	0.05	ENSRNOT00000027999	Acadsb Links NCBI RGD Ensembl Show fit	acyl-CoA dehydrogenase, short/branched chain
chr10_+_71546977 Show fit	0.05	ENSRNOT00000041140	Acaca Links NCBI RGD Ensembl Show fit	acetyl-CoA carboxylase alpha
chr1_-_198104109 Show fit	0.05	ENSRNOT00000026186	Sult1a1 Links NCBI RGD Ensembl Show fit	sulfotransferase family 1A member 1
chr2_-_187786700 Show fit	0.04	ENSRNOT00000092257 ENSRNOT00000092612 ENSRNOT00000068360	Slc25a44 Links NCBI RGD Ensembl Show fit	solute carrier family 25, member 44
chr3_-_158328881 Show fit	0.04	ENSRNOT00000044466	Ptprt Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, receptor type, T
chr2_-_80667481 Show fit	0.04	ENSRNOT00000016784	Trio Links NCBI RGD Ensembl Show fit	trio Rho guanine nucleotide exchange factor
chr1_+_57692836 Show fit	0.04	ENSRNOT00000083968 ENSRNOT00000019358	Chd1 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 1
chr4_+_170518673 Show fit	0.04	ENSRNOT00000011803	Atf7ip Links NCBI RGD Ensembl Show fit	activating transcription factor 7 interacting protein
chr4_-_150520363 Show fit	0.04	ENSRNOT00000065579	Zfp9 Links NCBI RGD Ensembl Show fit	zinc finger protein 9
chr6_+_96834525 Show fit	0.04	ENSRNOT00000077935	Hif1a Links NCBI RGD Ensembl Show fit	hypoxia inducible factor 1 alpha subunit
chr8_+_115546712 Show fit	0.03	ENSRNOT00000079801	Dcaf1 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 1
chrX_+_156336450 Show fit	0.03	ENSRNOT00000082124	Slc10a3 Links NCBI RGD Ensembl Show fit	solute carrier family 10, member 3
chr9_-_7891514 Show fit	0.03	ENSRNOT00000072684	Pot1b Links NCBI RGD Ensembl Show fit	protection of telomeres 1B
chr10_+_70298519 Show fit	0.03	ENSRNOT00000035730 ENSRNOT00000076233 ENSRNOT00000076445 ENSRNOT00000076133	Slfn5 Links NCBI RGD Ensembl Show fit	schlafen family member 5
chr3_-_145641654 Show fit	0.03	ENSRNOT00000008101 ENSRNOT00000008047	LOC102554315 Links NCBI RGD Ensembl Show fit	zinc finger protein 596-like
chr11_+_86903122 Show fit	0.03	ENSRNOT00000048063	Zdhhc8 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 8
chr7_-_60860990 Show fit	0.03	ENSRNOT00000009511	Rap1b Links NCBI RGD Ensembl Show fit	RAP1B, member of RAS oncogene family
chr1_-_201981229 Show fit	0.02	ENSRNOT00000077246 ENSRNOT00000035531	Ikzf5 Links NCBI RGD Ensembl Show fit	IKAROS family zinc finger 5
chr9_-_11108741 Show fit	0.02	ENSRNOT00000072357	Ccdc94 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 94
chr10_+_62566732 Show fit	0.02	ENSRNOT00000021368	Taok1 Links NCBI RGD Ensembl Show fit	TAO kinase 1
chr8_-_80631873 Show fit	0.02	ENSRNOT00000091661 ENSRNOT00000080662	Unc13c Links NCBI RGD Ensembl Show fit	unc-13 homolog C
chr7_+_80750725 Show fit	0.02	ENSRNOT00000079962	Oxr1 Links NCBI RGD Ensembl Show fit	oxidation resistance 1
chr18_+_30856847 Show fit	0.02	ENSRNOT00000027019	AABR07031734.1 Links NCBI RGD Ensembl Show fit
chr11_-_11585078 Show fit	0.02	ENSRNOT00000088878	Robo2 Links NCBI RGD Ensembl Show fit	roundabout guidance receptor 2
chr16_-_81714346 Show fit	0.02	ENSRNOT00000092552	Lamp1 Links NCBI RGD Ensembl Show fit	lysosomal-associated membrane protein 1
chrX_-_56765893 Show fit	0.02	ENSRNOT00000076283	Il1rapl1 Links NCBI RGD Ensembl Show fit	interleukin 1 receptor accessory protein-like 1
chr7_+_117643206 Show fit	0.02	ENSRNOT00000077588	Adck5 Links NCBI RGD Ensembl Show fit	aarF domain containing kinase 5
chr2_-_124047044 Show fit	0.02	ENSRNOT00000065384	Cetn4 Links NCBI RGD Ensembl Show fit	centrin 4
chr10_+_53713938 Show fit	0.02	ENSRNOT00000004236 ENSRNOT00000086599 ENSRNOT00000085582	Myh2 Links NCBI RGD Ensembl Show fit	myosin heavy chain 2
chr1_-_189182306 Show fit	0.02	ENSRNOT00000021249	Gp2 Links NCBI RGD Ensembl Show fit	glycoprotein 2
chr2_-_26011429 Show fit	0.02	ENSRNOT00000065143	Arhgef28 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 28
chr13_+_56546021 Show fit	0.02	ENSRNOT00000016797	Aspm Links NCBI RGD Ensembl Show fit	abnormal spindle microtubule assembly
chr1_+_225899313 Show fit	0.02	ENSRNOT00000031612	Scgb2a1 Links NCBI RGD Ensembl Show fit	secretoglobin, family 2A, member 1
chr12_+_17253791 Show fit	0.02	ENSRNOT00000083814	Zfand2a Links NCBI RGD Ensembl Show fit	zinc finger AN1-type containing 2A
chr1_-_213650247 Show fit	0.02	ENSRNOT00000019679	Cox8b Links NCBI RGD Ensembl Show fit	cytochrome c oxidase, subunit VIIIb
chrX_+_105575759 Show fit	0.02	ENSRNOT00000088760	Armcx3 Links NCBI RGD Ensembl Show fit	armadillo repeat containing, X-linked 3
chr10_-_13892997 Show fit	0.02	ENSRNOT00000004192	Traf7 Links NCBI RGD Ensembl Show fit	TNF receptor associated factor 7
chr7_+_30699476 Show fit	0.02	ENSRNOT00000059269	Anks1b Links NCBI RGD Ensembl Show fit	ankyrin repeat and sterile alpha motif domain containing 1B
chr13_-_34253910 Show fit	0.02	ENSRNOT00000092847	Tsn Links NCBI RGD Ensembl Show fit	translin
chr2_-_247446882 Show fit	0.02	ENSRNOT00000021963	Bmpr1b Links NCBI RGD Ensembl Show fit	bone morphogenetic protein receptor type 1B
chr1_-_100530183 Show fit	0.01	ENSRNOT00000067754	Mybpc2 Links NCBI RGD Ensembl Show fit	myosin binding protein C, fast-type
chr1_+_87045796 Show fit	0.01	ENSRNOT00000027620	Lgals7 Links NCBI RGD Ensembl Show fit	galectin 7
chr2_-_182846061 Show fit	0.01	ENSRNOT00000013025	Tlr2 Links NCBI RGD Ensembl Show fit	toll-like receptor 2
chr6_+_48452369 Show fit	0.01	ENSRNOT00000044310	Myt1l Links NCBI RGD Ensembl Show fit	myelin transcription factor 1-like
chr12_-_16201632 Show fit	0.01	ENSRNOT00000001688	Chst12 Links NCBI RGD Ensembl Show fit	carbohydrate sulfotransferase 12
chr11_+_73936750 Show fit	0.01	ENSRNOT00000002350	Atp13a3 Links NCBI RGD Ensembl Show fit	ATPase 13A3
chr17_-_67945037 Show fit	0.01	ENSRNOT00000023033	Klf6 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 6
chr17_+_77195247 Show fit	0.01	ENSRNOT00000081940	Optn Links NCBI RGD Ensembl Show fit	optineurin
chr8_+_133210473 Show fit	0.01	ENSRNOT00000082774	Ccr5 Links NCBI RGD Ensembl Show fit	chemokine (C-C motif) receptor 5
chr14_+_48726045 Show fit	0.01	ENSRNOT00000086646	Arap2 Links NCBI RGD Ensembl Show fit	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr6_-_115352681 Show fit	0.01	ENSRNOT00000005873	Gtf2a1 Links NCBI RGD Ensembl Show fit	general transcription factor 2A subunit 1
chr8_-_21481735 Show fit	0.01	ENSRNOT00000038069	Zfp426 Links NCBI RGD Ensembl Show fit	zinc finger protein 426
chr5_+_146294030 Show fit	0.01	ENSRNOT00000073637	AABR07049960.1 Links NCBI RGD Ensembl Show fit
chr1_-_167884690 Show fit	0.01	ENSRNOT00000091372	Olr61 Links NCBI RGD Ensembl Show fit	olfactory receptor 61
chr3_+_119173818 Show fit	0.01	ENSRNOT00000015124	Usp8 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 8
chr8_-_21453190 Show fit	0.01	ENSRNOT00000078192	Zfp26 Links NCBI RGD Ensembl Show fit	zinc finger protein 26
chr17_-_84249243 Show fit	0.01	ENSRNOT00000082549	Nebl Links NCBI RGD Ensembl Show fit	nebulette
chr13_+_113373578 Show fit	0.01	ENSRNOT00000009900	Plxna2 Links NCBI RGD Ensembl Show fit	plexin A2
chr1_-_167700332 Show fit	0.01	ENSRNOT00000092890	Trim21 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 21
chr4_+_56748494 Show fit	0.01	ENSRNOT00000065747	LOC103692087 Links NCBI RGD Ensembl Show fit	uncharacterized LOC103692087
chr1_+_87045335 Show fit	0.01	ENSRNOT00000084393	Lgals7 Links NCBI RGD Ensembl Show fit	galectin 7
chr5_+_158090173 Show fit	0.01	ENSRNOT00000088766 ENSRNOT00000079516 ENSRNOT00000092026	Tas1r2 Links NCBI RGD Ensembl Show fit	taste 1 receptor member 2
chr3_-_113091770 Show fit	0.01	ENSRNOT00000068132	Lcmt2 Links NCBI RGD Ensembl Show fit	leucine carboxyl methyltransferase 2
chr1_-_189181901 Show fit	0.01	ENSRNOT00000092022	Gp2 Links NCBI RGD Ensembl Show fit	glycoprotein 2
chr9_-_92524739 Show fit	0.01	ENSRNOT00000089889	Slc16a14 Links NCBI RGD Ensembl Show fit	solute carrier family 16, member 14
chr20_-_4818568 Show fit	0.01	ENSRNOT00000001115	Ddx39b Links NCBI RGD Ensembl Show fit	DExD-box helicase 39B
chr8_+_115546893 Show fit	0.01	ENSRNOT00000018932	Dcaf1 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 1
chr1_-_77893509 Show fit	0.01	ENSRNOT00000015059	Gltscr1 Links NCBI RGD Ensembl Show fit	glioma tumor suppressor candidate region gene 1
chr2_-_211690716 Show fit	0.01	ENSRNOT00000027690	Fndc7 Links NCBI RGD Ensembl Show fit	fibronectin type III domain containing 7
chrX_+_9956370 Show fit	0.01	ENSRNOT00000082316	LOC100910506 Links NCBI RGD Ensembl Show fit	peripheral plasma membrane protein CASK-like
chr7_-_30274984 Show fit	0.01	ENSRNOT00000092527 ENSRNOT00000010207	Slc17a8 Links NCBI RGD Ensembl Show fit	solute carrier family 17 member 8
chr4_-_115015965 Show fit	0.01	ENSRNOT00000014603	Mthfd2 Links NCBI RGD Ensembl Show fit	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
chr1_-_226255886 Show fit	0.01	ENSRNOT00000027842	Fen1 Links NCBI RGD Ensembl Show fit	flap structure-specific endonuclease 1
chr19_+_15195565 Show fit	0.00	ENSRNOT00000090865 ENSRNOT00000078874	Ces1d Links NCBI RGD Ensembl Show fit	carboxylesterase 1D
chr8_+_69753373 Show fit	0.00	ENSRNOT00000066973	Tipin Links NCBI RGD Ensembl Show fit	timeless interacting protein
chr7_-_10430992 Show fit	0.00	ENSRNOT00000047433	Zfp709l1 Links NCBI RGD Ensembl Show fit	zinc finger protein 709-like 1
chr14_-_25585222 Show fit	0.00	ENSRNOT00000042106	RGD1565048 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L9
chr2_-_123851854 Show fit	0.00	ENSRNOT00000023327	Il2 Links NCBI RGD Ensembl Show fit	interleukin 2
chr8_+_91368111 Show fit	0.00	ENSRNOT00000083151	Ttk Links NCBI RGD Ensembl Show fit	Ttk protein kinase
chrX_+_77076106 Show fit	0.00	ENSRNOT00000091527 ENSRNOT00000089381	Atp7a Links NCBI RGD Ensembl Show fit	ATPase copper transporting alpha
chr2_+_83393282 Show fit	0.00	ENSRNOT00000044871	Ctnnd2 Links NCBI RGD Ensembl Show fit	catenin delta 2
chr3_-_110828879 Show fit	0.00	ENSRNOT00000013963	Ccdc32 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 32
chr11_+_73693814 Show fit	0.00	ENSRNOT00000081081 ENSRNOT00000002354 ENSRNOT00000090940	Lsg1 Links NCBI RGD Ensembl Show fit	large 60S subunit nuclear export GTPase 1
chr18_-_27452420 Show fit	0.00	ENSRNOT00000037888	Cdc23 Links NCBI RGD Ensembl Show fit	cell division cycle 23
chr1_-_212622537 Show fit	0.00	ENSRNOT00000025609	Sprn Links NCBI RGD Ensembl Show fit	shadow of prion protein homolog (zebrafish)
chr10_+_31813814 Show fit	0.00	ENSRNOT00000009573	Havcr1 Links NCBI RGD Ensembl Show fit	hepatitis A virus cellular receptor 1
chr8_-_46694613 Show fit	0.00	ENSRNOT00000084514	AC133265.1 Links NCBI RGD Ensembl Show fit
chr19_+_38422164 Show fit	0.00	ENSRNOT00000017174	Nqo1 Links NCBI RGD Ensembl Show fit	NAD(P)H quinone dehydrogenase 1
chr4_+_72718458 Show fit	0.00	ENSRNOT00000044780	Arhgef5 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 5
chr13_-_78521911 Show fit	0.00	ENSRNOT00000087506	Rabgap1l Links NCBI RGD Ensembl Show fit	RAB GTPase activating protein 1-like
chr18_+_86071662 Show fit	0.00	ENSRNOT00000064901	Rttn Links NCBI RGD Ensembl Show fit	rotatin
chr2_+_26240385 Show fit	0.00	ENSRNOT00000024292	F2rl2 Links NCBI RGD Ensembl Show fit	coagulation factor II (thrombin) receptor-like 2
chr4_-_176528110 Show fit	0.00	ENSRNOT00000049569	Slco1a2 Links NCBI RGD Ensembl Show fit	solute carrier organic anion transporter family, member 1A2
chr15_-_14737704 Show fit	0.00	ENSRNOT00000011307	Synpr Links NCBI RGD Ensembl Show fit	synaptoporin

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0006713	glucocorticoid catabolic process(GO:0006713)
0.1	0.2	GO:0046338	phosphatidylethanolamine catabolic process(GO:0046338)
0.0	0.1	GO:0030579	ubiquitin-dependent SMAD protein catabolic process(GO:0030579)
0.0	0.1	GO:0090168	Golgi reassembly(GO:0090168)
0.0	0.1	GO:0044268	multicellular organismal protein metabolic process(GO:0044268) malonyl-CoA biosynthetic process(GO:2001295)
0.0	0.0	GO:1990164	histone H2A phosphorylation(GO:1990164)
0.0	0.0	GO:0071250	cellular response to carbon monoxide(GO:0071245) cellular response to nitrite(GO:0071250) response to nitrite(GO:0080033)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0003845	11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity(GO:0003845)
0.0	0.2	GO:0047499	calcium-independent phospholipase A2 activity(GO:0047499)
0.0	0.0	GO:0050656	aryl sulfotransferase activity(GO:0004062) steroid sulfotransferase activity(GO:0050294) 3'-phosphoadenosine 5'-phosphosulfate binding(GO:0050656)
0.0	0.1	GO:0003989	acetyl-CoA carboxylase activity(GO:0003989)
0.0	0.1	GO:0032184	SUMO polymer binding(GO:0032184)