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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Gbx1_Nobox_Alx3

Z-value: 0.22

Motif logo

Transcription factors associated with Gbx1_Nobox_Alx3

Gene Symbol Gene ID Gene Info
ENSRNOG00000013369 gastrulation brain homeobox 1
ENSRNOG00000025720 NOBOX oogenesis homeobox
ENSRNOG00000018290 ALX homeobox 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Noboxrn6_v1_chr4_-_72756887_727568870.682.0e-01Click!
Gbx1rn6_v1_chr4_+_7173961_71739610.454.5e-01Click!
Alx3rn6_v1_chr2_+_210381829_210381829-0.266.8e-01Click!

Activity profile of Gbx1_Nobox_Alx3 motif

Sorted Z-values of Gbx1_Nobox_Alx3 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr12_-_2174131 0.78 ENSRNOT00000001313
Purkinje cell protein 2
chr3_-_66417741 0.22 ENSRNOT00000007662
neuronal differentiation 1
chr12_-_45801842 0.17 ENSRNOT00000078837

chr12_-_17186679 0.16 ENSRNOT00000001730
UNC homeobox
chr2_+_145174876 0.16 ENSRNOT00000040631
mab-21 like 1
chr6_-_115616766 0.12 ENSRNOT00000006143
ENSRNOT00000045870
SEL1L ERAD E3 ligase adaptor subunit
chr19_+_25043680 0.11 ENSRNOT00000043971
adhesion G protein-coupled receptor L1
chr6_-_106971250 0.10 ENSRNOT00000010926
double PHD fingers 3
chr10_-_88670430 0.10 ENSRNOT00000025547
hypocretin neuropeptide precursor
chr6_-_125723732 0.08 ENSRNOT00000084815
fibulin 5
chr2_-_33025271 0.08 ENSRNOT00000074941
microtubule associated serine/threonine kinase family member 4
chr1_-_215033460 0.08 ENSRNOT00000044565
dual specificity phosphatase 8
chr20_+_3558827 0.08 ENSRNOT00000088130
discoidin domain receptor tyrosine kinase 1
chr18_-_31343797 0.07 ENSRNOT00000081850
protocadherin 1
chr3_+_95715193 0.06 ENSRNOT00000089525
paired box 6
chr4_+_158088505 0.05 ENSRNOT00000026643
von Willebrand factor
chr15_-_30147793 0.05 ENSRNOT00000060399

chr1_+_13595295 0.05 ENSRNOT00000079250
NHS-like 1
chr6_-_111417813 0.05 ENSRNOT00000016324
ENSRNOT00000085458
serine palmitoyltransferase, long chain base subunit 2
chr1_+_105284753 0.05 ENSRNOT00000041950
solute carrier family 6 member 5
chrX_-_124464963 0.05 ENSRNOT00000036472
ENSRNOT00000077697
transmembrane protein 255A
chrX_+_118197217 0.05 ENSRNOT00000090922
5-hydroxytryptamine receptor 2C
chr12_-_35979193 0.04 ENSRNOT00000071104
transmembrane protein 132B
chr1_-_43638161 0.04 ENSRNOT00000024460
interaction protein for cytohesin exchange factors 1
chr13_+_90533365 0.04 ENSRNOT00000082469
DDB1 and CUL4 associated factor 8
chr5_-_12526962 0.04 ENSRNOT00000092104
suppression of tumorigenicity 18
chr10_-_84920886 0.04 ENSRNOT00000068083
Sp2 transcription factor
chr10_-_74679858 0.04 ENSRNOT00000003859
protein phosphatase, Mg2+/Mn2+ dependent, 1E
chr10_-_87286387 0.04 ENSRNOT00000044206
keratin 28
chr17_+_11683862 0.04 ENSRNOT00000024766
msh homeobox 2
chr20_+_44680449 0.04 ENSRNOT00000000728
Traf3 interacting protein 2
chr9_+_117795132 0.03 ENSRNOT00000086943
A-kinase anchor inhibitor 1
chr4_+_88694583 0.03 ENSRNOT00000009202
protein phosphatase, Mg2+/Mn2+ dependent, 1K
chr1_-_89539210 0.03 ENSRNOT00000077462
ENSRNOT00000028644
hepsin
chr6_+_58468155 0.03 ENSRNOT00000091263
ets variant 1
chrX_+_124321551 0.03 ENSRNOT00000074486
transcriptional regulator Kaiso-like
chr1_+_217345545 0.03 ENSRNOT00000071741
SH3 and multiple ankyrin repeat domains 2
chr6_+_73553210 0.03 ENSRNOT00000006562
A-kinase anchoring protein 6
chrX_+_6273733 0.03 ENSRNOT00000074275
NDP, norrin cystine knot growth factor
chr2_-_187786700 0.03 ENSRNOT00000092257
ENSRNOT00000092612
ENSRNOT00000068360
solute carrier family 25, member 44
chr3_-_161917285 0.03 ENSRNOT00000025150
cadherin 22
chr5_-_168734296 0.03 ENSRNOT00000066120
calmodulin binding transcription activator 1
chr18_-_26656879 0.03 ENSRNOT00000086729
erythrocyte membrane protein band 4.1 like 4A
chr13_+_34400170 0.03 ENSRNOT00000061516
ENSRNOT00000061515
ENSRNOT00000061513
ENSRNOT00000084506
ENSRNOT00000086641
cytoplasmic linker associated protein 1
chr2_+_266315036 0.03 ENSRNOT00000055245
wntless Wnt ligand secretion mediator
chr7_+_136182224 0.03 ENSRNOT00000008159
transmembrane protein 117
chr7_-_142063212 0.03 ENSRNOT00000089912
solute carrier family 11 member 2
chr1_+_278557792 0.03 ENSRNOT00000023414
attractin like 1
chr10_-_91986632 0.03 ENSRNOT00000087824
N-ethylmaleimide sensitive factor, vesicle fusing ATPase
chr6_+_8219385 0.03 ENSRNOT00000040509
protein phosphatase, Mg2+/Mn2+ dependent, 1B
chr1_-_278042312 0.03 ENSRNOT00000018693
actin-binding LIM protein 1
chrX_+_74200972 0.02 ENSRNOT00000076956
cysteine-rich hydrophobic domain 1
chr16_+_7035241 0.02 ENSRNOT00000084977
NIMA-related kinase 4
chr15_+_44441856 0.02 ENSRNOT00000018006
gonadotropin releasing hormone 1
chr14_+_104250617 0.02 ENSRNOT00000079874
sprouty-related, EVH1 domain containing 2
chr10_-_93675991 0.02 ENSRNOT00000090662
membrane associated ring-CH-type finger 10
chr4_-_17594598 0.02 ENSRNOT00000008936
semaphorin 3E
chr3_+_128828331 0.02 ENSRNOT00000045393
phospholipase C, beta 4
chr7_+_2752680 0.02 ENSRNOT00000033726
citrate synthase
chr4_+_68656928 0.02 ENSRNOT00000016232
taste receptor, type 2, member 108
chr14_-_21128505 0.02 ENSRNOT00000004776
RUN and FYVE domain containing 3
chr1_-_166912524 0.02 ENSRNOT00000092952
inositol polyphosphate phosphatase-like 1
chr19_+_39229754 0.02 ENSRNOT00000050612
vacuolar protein sorting 4 homolog A
chr8_-_78233430 0.02 ENSRNOT00000083220
cingulin-like 1
chr3_+_48106099 0.02 ENSRNOT00000007218
solute carrier family 4 member 10
chr8_+_71914867 0.02 ENSRNOT00000023372
death-associated protein kinase 2
chr1_-_7480825 0.02 ENSRNOT00000048754
phosphatase and actin regulator 2
chr16_-_930527 0.02 ENSRNOT00000014787
spindlin 1
chr3_+_45683993 0.02 ENSRNOT00000038983
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
chr2_+_195996521 0.02 ENSRNOT00000082849
pogo transposable element with ZNF domain
chr4_-_66955732 0.02 ENSRNOT00000084282
lysine (K)-specific demethylase 7A
chr18_+_51523758 0.02 ENSRNOT00000078518
GRAM domain containing 3
chr1_+_185210922 0.02 ENSRNOT00000055120
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr5_-_136965191 0.02 ENSRNOT00000056842
ST3 beta-galactoside alpha-2,3-sialyltransferase 3
chr1_-_48825364 0.02 ENSRNOT00000024213
1-acylglycerol-3-phosphate O-acyltransferase 4
chr4_+_117962319 0.02 ENSRNOT00000057441
transforming growth factor alpha
chr3_-_11452529 0.01 ENSRNOT00000020206
solute carrier family 25 member 25
chr9_+_71915421 0.01 ENSRNOT00000020447
phosphoinositide kinase, FYVE-type zinc finger containing
chr16_-_25192675 0.01 ENSRNOT00000032289
membrane associated ring-CH-type finger 1
chr10_+_91217079 0.01 ENSRNOT00000004218
hexamethylene bis-acetamide inducible 2
chr1_+_140998240 0.01 ENSRNOT00000023506
ENSRNOT00000090897
abhydrolase domain containing 2
chr1_+_204959174 0.01 ENSRNOT00000023257
zinc finger RANBP2-type containing 1
chr6_-_4520604 0.01 ENSRNOT00000042230
ENSRNOT00000043870
ENSRNOT00000070918
ENSRNOT00000046246
ENSRNOT00000052367
ENSRNOT00000042251
solute carrier family 8 member A1
chr3_-_60765645 0.01 ENSRNOT00000050513
activating transcription factor 2
chr13_+_31081804 0.01 ENSRNOT00000041413
cadherin 7
chr5_-_145423172 0.01 ENSRNOT00000081919
gap junction protein, beta 5
chr11_-_62067655 0.01 ENSRNOT00000093382
zinc finger and BTB domain containing 20
chr17_-_87826421 0.01 ENSRNOT00000068156
Rho GTPase activating protein 21
chr5_+_135574172 0.01 ENSRNOT00000023416
testis-specific kinase 2
chr12_-_41485122 0.01 ENSRNOT00000001859
DEAD-box helicase 54
chr3_+_56125924 0.01 ENSRNOT00000011380
ubiquitin protein ligase E3 component n-recognin 3
chr19_-_58735173 0.01 ENSRNOT00000030077
pecanex homolog 2 (Drosophila)
chr7_-_122329443 0.01 ENSRNOT00000032232
megakaryoblastic leukemia (translocation) 1
chr2_-_188559882 0.01 ENSRNOT00000088199
tripartite motif-containing 46
chr1_-_101819478 0.01 ENSRNOT00000056181
glutamate-rich WD repeat containing 1
chr16_+_7035068 0.01 ENSRNOT00000024296
NIMA-related kinase 4
chr18_+_79773608 0.01 ENSRNOT00000088484
zinc finger protein 516
chr3_+_148654668 0.01 ENSRNOT00000081370
transmembrane 9 superfamily member 4
chr4_+_22898527 0.01 ENSRNOT00000072455
ENSRNOT00000076123
DBF4 zinc finger
chr3_-_57607683 0.01 ENSRNOT00000093222
ENSRNOT00000058524
methyltransferase like 8
chr1_+_28454966 0.01 ENSRNOT00000078841
ENSRNOT00000030327
tumor protein D52-like 1
chr3_+_48096954 0.01 ENSRNOT00000068238
ENSRNOT00000064344
ENSRNOT00000044638
solute carrier family 4 member 10
chr8_-_48597867 0.01 ENSRNOT00000077958
NLR family member X1
chr16_-_10802512 0.01 ENSRNOT00000079554
bone morphogenetic protein receptor type 1A
chr2_+_80269661 0.01 ENSRNOT00000015975

chr16_-_74264142 0.01 ENSRNOT00000026067
dickkopf WNT signaling pathway inhibitor 4
chr7_+_78558701 0.01 ENSRNOT00000006393
regulating synaptic membrane exocytosis 2
chr10_+_70242874 0.01 ENSRNOT00000010924
fibronectin type III domain containing 8
chrX_-_104932508 0.01 ENSRNOT00000075325
NADPH oxidase 1
chr13_+_98311827 0.01 ENSRNOT00000082844
CDC42 binding protein kinase alpha
chr1_-_227932603 0.01 ENSRNOT00000033795
membrane spanning 4-domains A6A
chr14_-_16903242 0.01 ENSRNOT00000003001
shroom family member 3
chr18_+_57011575 0.01 ENSRNOT00000026679
interleukin 17B
chr1_-_23556241 0.01 ENSRNOT00000072943
syntaxin-7-like
chr2_+_83393282 0.01 ENSRNOT00000044871
catenin delta 2
chr1_-_64147251 0.01 ENSRNOT00000088502
CCR4-NOT transcription complex, subunit 3
chrX_+_74205842 0.01 ENSRNOT00000077003
cysteine-rich hydrophobic domain 1
chr9_-_81566096 0.01 ENSRNOT00000019497
angio-associated, migratory cell protein
chr4_+_61924013 0.01 ENSRNOT00000090717
bisphosphoglycerate mutase
chr3_-_103745236 0.01 ENSRNOT00000006876
NUT midline carcinoma, family member 1
chr9_+_73378057 0.01 ENSRNOT00000043627
ENSRNOT00000045766
ENSRNOT00000092445
ENSRNOT00000037974
microtubule-associated protein 2
chr18_-_16543992 0.01 ENSRNOT00000036306
solute carrier family 39 member 6
chr16_+_60925093 0.01 ENSRNOT00000015813
tankyrase
chr19_+_22699808 0.01 ENSRNOT00000023169
similar to RIKEN cDNA 4921524J17
chr19_+_45938915 0.01 ENSRNOT00000065508
MON1 homolog B, secretory trafficking associated
chr3_+_113423693 0.01 ENSRNOT00000021091
Huntingtin interacting protein K
chr2_-_165600748 0.01 ENSRNOT00000013216
intraflagellar transport 80
chr1_+_260093641 0.01 ENSRNOT00000019521
cyclin J
chr19_-_17399548 0.01 ENSRNOT00000075991
chromodomain helicase DNA binding protein 9
chr4_-_148845267 0.01 ENSRNOT00000037397
transmembrane protein 72
chr15_-_95514259 0.01 ENSRNOT00000038433
SLIT and NTRK-like family, member 6
chr10_-_13446135 0.01 ENSRNOT00000084991
potassium channel tetramerization domain containing 5
chr11_-_62451149 0.01 ENSRNOT00000093686
ENSRNOT00000081443
zinc finger and BTB domain containing 20
chr16_-_9658484 0.01 ENSRNOT00000065216
mitogen-activated protein kinase 8
chr2_+_51672722 0.01 ENSRNOT00000016485
fibroblast growth factor 10
chr9_-_105693357 0.01 ENSRNOT00000066968
nudix hydrolase 12
chr6_+_42854888 0.01 ENSRNOT00000007259
ornithine decarboxylase 1
chr1_-_128721956 0.01 ENSRNOT00000076511
ENSRNOT00000050832
synemin
chr7_-_14364178 0.01 ENSRNOT00000090673
A-kinase anchoring protein 8 like
chr1_+_167870452 0.01 ENSRNOT00000025027
olfactory receptor 63
chr16_+_71787966 0.01 ENSRNOT00000080084
HtrA serine peptidase 4
chr1_-_134871167 0.01 ENSRNOT00000076300
chromodomain helicase DNA binding protein 2
chr5_-_7941822 0.01 ENSRNOT00000079917
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
chr9_-_11027506 0.01 ENSRNOT00000071107
chromatin assembly factor 1 subunit A
chr13_+_87986240 0.01 ENSRNOT00000003705
regulator of G-protein signaling 5
chr6_+_72124417 0.01 ENSRNOT00000040548
sec1 family domain containing 1
chr7_+_144865608 0.01 ENSRNOT00000091596
ENSRNOT00000055285
heterogeneous nuclear ribonucleoprotein A1
chr7_+_42304534 0.01 ENSRNOT00000085097
KIT ligand
chr3_+_16846412 0.01 ENSRNOT00000074266

chr9_-_85243001 0.00 ENSRNOT00000020219
secretogranin II
chr14_+_39964588 0.00 ENSRNOT00000003240
gamma-aminobutyric acid type A receptor gamma 1 subunit
chr15_-_61648267 0.00 ENSRNOT00000071805
N(alpha)-acetyltransferase 16, NatA auxiliary subunit
chr3_-_37803112 0.00 ENSRNOT00000059461
nebulin
chr10_-_87232723 0.00 ENSRNOT00000015150
keratin 25
chr2_+_154604832 0.00 ENSRNOT00000013777
vomeronasal 2 receptor 44
chr1_+_225037737 0.00 ENSRNOT00000077959
BSCL2, seipin lipid droplet biogenesis associated
chr2_+_136993208 0.00 ENSRNOT00000040187
ENSRNOT00000066542
protocadherin 10
chr5_+_146656049 0.00 ENSRNOT00000036029
CUB and Sushi multiple domains 2
chr4_-_100252755 0.00 ENSRNOT00000017301
vesicle-associated membrane protein 8
chr14_-_19072677 0.00 ENSRNOT00000060548
similar to alpha-fetoprotein
chr1_-_85517360 0.00 ENSRNOT00000026114
EP300 interacting inhibitor of differentiation 2
chr2_+_195651930 0.00 ENSRNOT00000028299
tudor and KH domain containing
chrX_-_158978995 0.00 ENSRNOT00000001179
membrane magnesium transporter 1
chr2_+_165076607 0.00 ENSRNOT00000012831
interleukin 12A
chr15_+_31950986 0.00 ENSRNOT00000080233

chr8_-_39551700 0.00 ENSRNOT00000091894
ENSRNOT00000076025
PBX/knotted 1 homeobox 2
chr8_+_33239139 0.00 ENSRNOT00000011589
Rho GTPase activating protein 32
chr2_+_158097843 0.00 ENSRNOT00000016541
pentraxin 3
chr6_+_106496992 0.00 ENSRNOT00000086136
ENSRNOT00000058181
regulator of G-protein signaling 6
chr5_+_133819726 0.00 ENSRNOT00000081075
Scl/Tal1 interrupting locus
chr2_+_118910587 0.00 ENSRNOT00000065518
zinc finger protein 639
chrX_-_62690806 0.00 ENSRNOT00000018147
DNA polymerase alpha 1, catalytic subunit
chr9_+_50966766 0.00 ENSRNOT00000076636
ERCC excision repair 5, endonuclease
chr9_+_49647257 0.00 ENSRNOT00000021899
mitochondrial ribosomal protein S9
chr1_-_228753422 0.00 ENSRNOT00000028626
deltex E3 ubiquitin ligase 4
chr4_+_68608137 0.00 ENSRNOT00000036398
WEE1 homolog 2
chr10_-_16731898 0.00 ENSRNOT00000028186
CREB3 regulatory factor
chr16_+_7758996 0.00 ENSRNOT00000061063
biotinidase
chr4_-_21920651 0.00 ENSRNOT00000066211
transmembrane protein 243
chr19_+_38039729 0.00 ENSRNOT00000089783
nuclear factor of activated T-cells 3
chr1_+_80141630 0.00 ENSRNOT00000029552
optic atrophy 3
chr8_+_12994155 0.00 ENSRNOT00000011855
CWC15 spliceosome-associated protein
chr10_-_86004096 0.00 ENSRNOT00000091978
ENSRNOT00000066855
SH3 and cysteine rich domain 2
chr16_-_73152921 0.00 ENSRNOT00000048602
zinc finger, matrin type 4
chr14_+_37116492 0.00 ENSRNOT00000002921
sarcoglycan, beta
chr1_-_228505080 0.00 ENSRNOT00000028600
olfactory receptor 322
chr1_+_68436593 0.00 ENSRNOT00000080325
leucyl-cystinyl aminopeptidase
chr4_-_157304653 0.00 ENSRNOT00000051613
leucine rich repeat containing 23
chr7_+_44009069 0.00 ENSRNOT00000005523
MGAT4 family, member C
chr2_-_123972356 0.00 ENSRNOT00000023348
interleukin 21
chr6_-_1003905 0.00 ENSRNOT00000082071
ENSRNOT00000042735
fasciculation and elongation protein zeta 2
chr5_+_36566783 0.00 ENSRNOT00000077650
F-box and leucine-rich repeat protein 4
chr11_-_61287914 0.00 ENSRNOT00000086286
spindle and centriole associated protein 1
chr19_+_6046665 0.00 ENSRNOT00000084126
cadherin 8
chr2_-_44786963 0.00 ENSRNOT00000060695
Ski2 like RNA helicase 2
chr8_-_53816447 0.00 ENSRNOT00000011454
tetratricopeptide repeat domain 12
chr13_+_49005405 0.00 ENSRNOT00000092560
ENSRNOT00000076457
LEM domain containing 1
chr11_+_31539016 0.00 ENSRNOT00000072856
interferon alpha and beta receptor subunit 2
chr1_-_15374850 0.00 ENSRNOT00000016728
peroxisomal biogenesis factor 7
chr3_+_140024043 0.00 ENSRNOT00000086409
Ras and Rab interactor 2

Network of associatons between targets according to the STRING database.

First level regulatory network of Gbx1_Nobox_Alx3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 GO:0016056 rhodopsin mediated signaling pathway(GO:0016056)
0.0 0.2 GO:0060729 intestinal epithelial structure maintenance(GO:0060729)
0.0 0.2 GO:0035726 common myeloid progenitor cell proliferation(GO:0035726)
0.0 0.1 GO:1904937 pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)
0.0 0.1 GO:0006667 sphinganine metabolic process(GO:0006667)
0.0 0.0 GO:0031583 phospholipase D-activating G-protein coupled receptor signaling pathway(GO:0031583)
0.0 0.1 GO:0051970 negative regulation of transmission of nerve impulse(GO:0051970)
0.0 0.0 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)
0.0 0.0 GO:0034769 basement membrane disassembly(GO:0034769)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.0 0.1 GO:0071953 elastic fiber(GO:0071953)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.0 GO:0005294 neutral L-amino acid secondary active transmembrane transporter activity(GO:0005294)
0.0 0.1 GO:0038062 protein tyrosine kinase collagen receptor activity(GO:0038062)
0.0 0.0 GO:0071886 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding(GO:0071886)
0.0 0.1 GO:0004758 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS Genes involved in Regulation of gene expression in beta cells