GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Irx5 Links NCBI RGD Ensembl	ENSRNOG00000011180	iroquois homeobox 5

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Irx5	rn6_v1_chr19_+_16415636_16415636	-0.52	3.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_-_123638702 Show fit	0.32	ENSRNOT00000082473 ENSRNOT00000044470 ENSRNOT00000092017	Cyp2d1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily d, polypeptide 1
chr7_-_123630045 Show fit	0.22	ENSRNOT00000050002	Cyp2d1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily d, polypeptide 1
chr2_-_220838905 Show fit	0.19	ENSRNOT00000078914	AABR07013065.1 Links NCBI RGD Ensembl Show fit
chr5_-_166116516 Show fit	0.17	ENSRNOT00000079919 ENSRNOT00000080888	Kif1b Links NCBI RGD Ensembl Show fit	kinesin family member 1B
chr10_-_55997299 Show fit	0.16	ENSRNOT00000074505	Cyb5d1 Links NCBI RGD Ensembl Show fit	cytochrome b5 domain containing 1
chr2_+_251200686 Show fit	0.15	ENSRNOT00000019210	Col24a1 Links NCBI RGD Ensembl Show fit	collagen type XXIV alpha 1 chain
chr20_-_19479325 Show fit	0.14	ENSRNOT00000051491	Fam13c Links NCBI RGD Ensembl Show fit	family with sequence similarity 13, member C
chr9_-_45206427 Show fit	0.11	ENSRNOT00000042227	Aff3 Links NCBI RGD Ensembl Show fit	AF4/FMR2 family, member 3
chr12_-_29743705 Show fit	0.11	ENSRNOT00000001185	Caln1 Links NCBI RGD Ensembl Show fit	calneuron 1
chr17_-_86657473 Show fit	0.11	ENSRNOT00000078827	AABR07028795.1 Links NCBI RGD Ensembl Show fit
chr19_+_755460 Show fit	0.11	ENSRNOT00000076560	Dync1li2 Links NCBI RGD Ensembl Show fit	dynein, cytoplasmic 1 light intermediate chain 2
chr1_-_128287151 Show fit	0.10	ENSRNOT00000084946 ENSRNOT00000089723	Mef2a Links NCBI RGD Ensembl Show fit	myocyte enhancer factor 2a
chr5_-_137125737 Show fit	0.10	ENSRNOT00000088532	AABR07049768.1 Links NCBI RGD Ensembl Show fit
chr8_+_19888667 Show fit	0.09	ENSRNOT00000078593	Zfp317 Links NCBI RGD Ensembl Show fit	zinc finger protein 317
chr3_+_40038336 Show fit	0.09	ENSRNOT00000048804	Galnt13 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 13
chr9_-_43454078 Show fit	0.09	ENSRNOT00000023550	Tmem131 Links NCBI RGD Ensembl Show fit	transmembrane protein 131
chr7_-_59587382 Show fit	0.08	ENSRNOT00000091427 ENSRNOT00000066396	Cnot2 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex, subunit 2
chr1_+_213737788 Show fit	0.08	ENSRNOT00000020004	Pgghg Links NCBI RGD Ensembl Show fit	protein-glucosylgalactosylhydroxylysine glucosidase
chr11_-_1836897 Show fit	0.08	ENSRNOT00000050533	Zfp654 Links NCBI RGD Ensembl Show fit	zinc finger protein 654
chr1_-_235813030 Show fit	0.08	ENSRNOT00000014800	Vps13a Links NCBI RGD Ensembl Show fit	vacuolar protein sorting 13A
chr14_-_46153212 Show fit	0.08	ENSRNOT00000079269	Nwd2 Links NCBI RGD Ensembl Show fit	NACHT and WD repeat domain containing 2
chr5_+_116420690 Show fit	0.08	ENSRNOT00000087089	Nfia Links NCBI RGD Ensembl Show fit	nuclear factor I/A
chr6_+_26474071 Show fit	0.07	ENSRNOT00000090342	Ift172 Links NCBI RGD Ensembl Show fit	intraflagellar transport 172
chr8_+_57936650 Show fit	0.07	ENSRNOT00000089686	Exph5 Links NCBI RGD Ensembl Show fit	exophilin 5
chr17_-_22311392 Show fit	0.07	ENSRNOT00000019389	Hivep1 Links NCBI RGD Ensembl Show fit	human immunodeficiency virus type I enhancer binding protein 1
chr10_-_36336628 Show fit	0.06	ENSRNOT00000030035	Zfp879 Links NCBI RGD Ensembl Show fit	zinc finger protein 879
chr7_+_70987861 Show fit	0.06	ENSRNOT00000072906	Nemp1 Links NCBI RGD Ensembl Show fit	nuclear envelope integral membrane protein 1
chr3_-_57270036 Show fit	0.05	ENSRNOT00000075860	Mettl8 Links NCBI RGD Ensembl Show fit	methyltransferase like 8
chr10_-_52290657 Show fit	0.05	ENSRNOT00000005293	Map2k4 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase kinase 4
chr7_-_123621102 Show fit	0.05	ENSRNOT00000046024	Cyp2d5 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily d, polypeptide 5
chr5_-_110832175 Show fit	0.05	ENSRNOT00000052379	Cks1l Links NCBI RGD Ensembl Show fit	CDC28 protein kinase regulatory subunit 1-like
chr5_+_122390522 Show fit	0.05	ENSRNOT00000064567	Sgip1 Links NCBI RGD Ensembl Show fit	SH3-domain GRB2-like (endophilin) interacting protein 1
chr18_-_28017925 Show fit	0.05	ENSRNOT00000075420	Lrrtm2 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 2
chr4_-_78342863 Show fit	0.05	ENSRNOT00000049038	Gimap6 Links NCBI RGD Ensembl Show fit	GTPase, IMAP family member 6
chr7_-_15856676 Show fit	0.05	ENSRNOT00000086553	AABR07055919.1 Links NCBI RGD Ensembl Show fit
chr2_+_104744461 Show fit	0.05	ENSRNOT00000016083 ENSRNOT00000082627	Cp Links NCBI RGD Ensembl Show fit	ceruloplasmin
chr1_-_100969560 Show fit	0.05	ENSRNOT00000035908	Cpt1c Links NCBI RGD Ensembl Show fit	carnitine palmitoyltransferase 1c
chr1_+_80141630 Show fit	0.05	ENSRNOT00000029552	Opa3 Links NCBI RGD Ensembl Show fit	optic atrophy 3
chr2_+_149315189 Show fit	0.04	ENSRNOT00000082464	Med12l Links NCBI RGD Ensembl Show fit	mediator complex subunit 12-like
chr17_+_76359022 Show fit	0.04	ENSRNOT00000039621 ENSRNOT00000092481	Sec61a2 Links NCBI RGD Ensembl Show fit	Sec61 translocon alpha 2 subunit
chr2_+_123617794 Show fit	0.04	ENSRNOT00000080632	RGD1307100 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA D630029K19
chr15_-_100348760 Show fit	0.04	ENSRNOT00000085607	AABR07019341.1 Links NCBI RGD Ensembl Show fit
chr8_-_114013623 Show fit	0.04	ENSRNOT00000018175	Atp2c1 Links NCBI RGD Ensembl Show fit	ATPase secretory pathway Ca2+ transporting 1
chr3_+_112916217 Show fit	0.04	ENSRNOT00000030065	Tmem62 Links NCBI RGD Ensembl Show fit	transmembrane protein 62
chr7_+_26522314 Show fit	0.04	ENSRNOT00000011572	Slc41a2 Links NCBI RGD Ensembl Show fit	solute carrier family 41 member 2
chr7_-_47928674 Show fit	0.04	ENSRNOT00000038144	Mettl25 Links NCBI RGD Ensembl Show fit	methyltransferase like 25
chr4_+_31229913 Show fit	0.04	ENSRNOT00000077134 ENSRNOT00000087897	Samd9l Links NCBI RGD Ensembl Show fit	sterile alpha motif domain containing 9-like
chr16_-_19637609 Show fit	0.04	ENSRNOT00000021742	Zfp709 Links NCBI RGD Ensembl Show fit	zinc finger protein 709
chr8_-_50246656 Show fit	0.04	ENSRNOT00000024240	Sidt2 Links NCBI RGD Ensembl Show fit	SID1 transmembrane family, member 2
chrX_-_119162518 Show fit	0.03	ENSRNOT00000073176	LOC103694506 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2 W
chr1_+_211543751 Show fit	0.03	ENSRNOT00000049631	Lrrc27 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 27
chr9_+_52693831 Show fit	0.03	ENSRNOT00000050275	Wdr75 Links NCBI RGD Ensembl Show fit	WD repeat domain 75
chr18_+_36596585 Show fit	0.03	ENSRNOT00000036613	Rbm27 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 27
chr3_+_134440195 Show fit	0.03	ENSRNOT00000072928	AABR07054000.1 Links NCBI RGD Ensembl Show fit
chr14_+_108143869 Show fit	0.02	ENSRNOT00000090003	Usp34 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 34
chr1_+_268189277 Show fit	0.02	ENSRNOT00000065001	Sorcs3 Links NCBI RGD Ensembl Show fit	sortilin-related VPS10 domain containing receptor 3
chr7_+_122979021 Show fit	0.02	ENSRNOT00000085707	Zc3h7b Links NCBI RGD Ensembl Show fit	zinc finger CCCH-type containing 7B
chr15_+_57241968 Show fit	0.02	ENSRNOT00000082191	Lcp1 Links NCBI RGD Ensembl Show fit	lymphocyte cytosolic protein 1
chr9_+_65013862 Show fit	0.02	ENSRNOT00000092906 ENSRNOT00000081146	Aox3 Links NCBI RGD Ensembl Show fit	aldehyde oxidase 3
chr13_+_57243877 Show fit	0.02	ENSRNOT00000083693	Kcnt2 Links NCBI RGD Ensembl Show fit	potassium sodium-activated channel subfamily T member 2
chr4_+_21462779 Show fit	0.02	ENSRNOT00000089747	Grm3 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 3
chr3_+_113102090 Show fit	0.01	ENSRNOT00000016529	Adal Links NCBI RGD Ensembl Show fit	adenosine deaminase-like
chr13_+_49250301 Show fit	0.01	ENSRNOT00000036110	Rbbp5 Links NCBI RGD Ensembl Show fit	RB binding protein 5, histone lysine methyltransferase complex subunit
chr7_+_47928060 Show fit	0.01	ENSRNOT00000005740	Ccdc59 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 59
chr17_+_45467015 Show fit	0.01	ENSRNOT00000081408	Gpx5 Links NCBI RGD Ensembl Show fit	glutathione peroxidase 5
chr1_+_84652632 Show fit	0.01	ENSRNOT00000041861	AABR07002774.2 Links NCBI RGD Ensembl Show fit
chr19_-_23944820 Show fit	0.01	ENSRNOT00000080337	Zfp330 Links NCBI RGD Ensembl Show fit	zinc finger protein 330

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.5	GO:0042738	exogenous drug catabolic process(GO:0042738)
0.0	0.1	GO:0055005	ventricular cardiac myofibril assembly(GO:0055005)
0.0	0.2	GO:0019520	aldonic acid metabolic process(GO:0019520) D-gluconate metabolic process(GO:0019521)
0.0	0.0	GO:0032472	Golgi calcium ion transport(GO:0032472)
0.0	0.1	GO:0072709	cellular response to sorbitol(GO:0072709)
0.0	0.1	GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly(GO:0010606)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0071821	FANCM-MHF complex(GO:0071821)
0.0	0.1	GO:0030015	CCR4-NOT core complex(GO:0030015)
0.0	0.1	GO:0097598	sperm cytoplasmic droplet(GO:0097598)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity(GO:0004616)
0.0	0.1	GO:0001226	RNA polymerase II transcription corepressor binding(GO:0001226)
0.0	0.5	GO:0070330	aromatase activity(GO:0070330)
0.0	0.1	GO:0045504	dynein heavy chain binding(GO:0045504)
0.0	0.0	GO:0004095	carnitine O-palmitoyltransferase activity(GO:0004095) O-palmitoyltransferase activity(GO:0016416)