ISMARA results: Rorc

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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Rorc_Nr1d1

Z-value: 0.39

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Transcription factors associated with Rorc_Nr1d1

Gene Symbol	Gene ID	Gene Info
Rorc NCBI RGD Ensembl	ENSRNOG00000020836	RAR-related orphan receptor C
Nr1d1 NCBI RGD Ensembl	ENSRNOG00000009329	nuclear receptor subfamily 1, group D, member 1

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Rorc	rn6_v1_chr2_+_195617021_195617044	0.24	7.0e-01	Click!
Nr1d1	rn6_v1_chr10_-_86690815_86690815	-0.11	8.6e-01	Click!

Activity profile of Rorc_Nr1d1 motif

Sorted Z-values of Rorc_Nr1d1 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_+_79713567 Show fit	0.41	ENSRNOT00000012110	C1qtnf4 NCBI RGD Ensembl Show fit	C1q and tumor necrosis factor related protein 4
chr12_-_2174131 Show fit	0.23	ENSRNOT00000001313	Pcp2 NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr1_-_72339395 Show fit	0.17	ENSRNOT00000021772	Zfp580 NCBI RGD Ensembl Show fit	zinc finger protein 580
chr19_-_25062934 Show fit	0.11	ENSRNOT00000060117	Gm10644 NCBI RGD Ensembl Show fit	predicted gene 10644
chr10_+_14248399 Show fit	0.11	ENSRNOT00000077689	Spsb3 NCBI RGD Ensembl Show fit	splA/ryanodine receptor domain and SOCS box containing 3
chr3_+_2642531 Show fit	0.11	ENSRNOT00000081798	Fut7 NCBI RGD Ensembl Show fit	fucosyltransferase 7
chr5_-_72287669 Show fit	0.11	ENSRNOT00000022255	Klf4 NCBI RGD Ensembl Show fit	Kruppel like factor 4
chr20_+_44680449 Show fit	0.10	ENSRNOT00000000728	Traf3ip2 NCBI RGD Ensembl Show fit	Traf3 interacting protein 2
chr1_-_225594958 Show fit	0.06	ENSRNOT00000027492	Scgb1d2 NCBI RGD Ensembl Show fit	secretoglobin, family 1D, member 2
chr11_+_87366621 Show fit	0.06	ENSRNOT00000040978	Aifm3 NCBI RGD Ensembl Show fit	apoptosis inducing factor, mitochondria associated 3

Showing 1 to 10 of 98 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Rorc_Nr1d1

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Total log-likelihood	Term	Description
0.2	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.1	GO:2000342	negative regulation of chemokine (C-X-C motif) ligand 2 production(GO:2000342)
0.1	GO:1901492	neuropilin signaling pathway(GO:0038189) VEGF-activated neuropilin signaling pathway(GO:0038190) cardiac vascular smooth muscle cell development(GO:0060948) positive regulation of lymphangiogenesis(GO:1901492)
0.1	GO:0007198	adenylate cyclase-inhibiting serotonin receptor signaling pathway(GO:0007198)
0.0	GO:0060084	synaptic transmission involved in micturition(GO:0060084)

Showing 1 to 5 of 5 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005968	Rab-protein geranylgeranyltransferase complex(GO:0005968)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

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Total log-likelihood	Term	Description
0.1	GO:0001010	transcription factor activity, sequence-specific DNA binding transcription factor recruiting(GO:0001010)
0.1	GO:0046920	alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.1	GO:0004663	Rab geranylgeranyltransferase activity(GO:0004663)
0.0	GO:1990269	RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)

Showing 1 to 4 of 4 entries

Results for Rorc_Nr1d1

Z-value: 0.39

Motif logo

Transcription factors associated with Rorc_Nr1d1

Activity-expression correlation:

Activity profile of Rorc_Nr1d1 motif

Sorted Z-values of Rorc_Nr1d1 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Rorc_Nr1d1

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: