GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Rorc Links NCBI RGD Ensembl	ENSRNOG00000020836	RAR-related orphan receptor C
Nr1d1 Links NCBI RGD Ensembl	ENSRNOG00000009329	nuclear receptor subfamily 1, group D, member 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Rorc	rn6_v1_chr2_+_195617021_195617044	0.24	7.0e-01	Click!
Nr1d1	rn6_v1_chr10_-_86690815_86690815	-0.11	8.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_+_79713567 Show fit	0.41	ENSRNOT00000012110	C1qtnf4 Links NCBI RGD Ensembl Show fit	C1q and tumor necrosis factor related protein 4
chr12_-_2174131 Show fit	0.23	ENSRNOT00000001313	Pcp2 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr1_-_72339395 Show fit	0.17	ENSRNOT00000021772	Zfp580 Links NCBI RGD Ensembl Show fit	zinc finger protein 580
chr19_-_25062934 Show fit	0.11	ENSRNOT00000060117	Gm10644 Links NCBI RGD Ensembl Show fit	predicted gene 10644
chr10_+_14248399 Show fit	0.11	ENSRNOT00000077689	Spsb3 Links NCBI RGD Ensembl Show fit	splA/ryanodine receptor domain and SOCS box containing 3
chr3_+_2642531 Show fit	0.11	ENSRNOT00000081798	Fut7 Links NCBI RGD Ensembl Show fit	fucosyltransferase 7
chr5_-_72287669 Show fit	0.11	ENSRNOT00000022255	Klf4 Links NCBI RGD Ensembl Show fit	Kruppel like factor 4
chr20_+_44680449 Show fit	0.10	ENSRNOT00000000728	Traf3ip2 Links NCBI RGD Ensembl Show fit	Traf3 interacting protein 2
chr1_-_225594958 Show fit	0.06	ENSRNOT00000027492	Scgb1d2 Links NCBI RGD Ensembl Show fit	secretoglobin, family 1D, member 2
chr11_+_87366621 Show fit	0.06	ENSRNOT00000040978	Aifm3 Links NCBI RGD Ensembl Show fit	apoptosis inducing factor, mitochondria associated 3
chr4_+_199916 Show fit	0.06	ENSRNOT00000009317	Htr5a Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 5A
chr8_-_109418872 Show fit	0.06	ENSRNOT00000021657	Pccb Links NCBI RGD Ensembl Show fit	propionyl-CoA carboxylase beta subunit
chr9_+_17340341 Show fit	0.06	ENSRNOT00000026637 ENSRNOT00000026559 ENSRNOT00000042790 ENSRNOT00000044163 ENSRNOT00000083811	Vegfa Links NCBI RGD Ensembl Show fit	vascular endothelial growth factor A
chr2_+_122877286 Show fit	0.05	ENSRNOT00000033080	Arse Links NCBI RGD Ensembl Show fit	arylsulfatase E
chr18_-_55771730 Show fit	0.05	ENSRNOT00000026426	Smim3 Links NCBI RGD Ensembl Show fit	small integral membrane protein 3
chr8_+_48443767 Show fit	0.05	ENSRNOT00000010127	C1qtnf5 Links NCBI RGD Ensembl Show fit	C1q and tumor necrosis factor related protein 5
chr2_-_260115577 Show fit	0.05	ENSRNOT00000065997	Rabggtb Links NCBI RGD Ensembl Show fit	Rab geranylgeranyltransferase, beta subunit
chr8_+_82380757 Show fit	0.05	ENSRNOT00000013512	Leo1 Links NCBI RGD Ensembl Show fit	LEO1 homolog, Paf1/RNA polymerase II complex component
chr2_-_189096785 Show fit	0.05	ENSRNOT00000028200	Chrnb2 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic beta 2 subunit
chr4_-_123510217 Show fit	0.05	ENSRNOT00000080734	Slc41a3 Links NCBI RGD Ensembl Show fit	solute carrier family 41, member 3
chr19_-_26194198 Show fit	0.05	ENSRNOT00000005917	Wdr83 Links NCBI RGD Ensembl Show fit	WD repeat domain 83
chr18_+_30527705 Show fit	0.05	ENSRNOT00000027168	Pcdhb14 Links NCBI RGD Ensembl Show fit	protocadherin beta 14
chr6_+_104437159 Show fit	0.04	ENSRNOT00000076485	Susd6 Links NCBI RGD Ensembl Show fit	sushi domain containing 6
chr1_-_88066101 Show fit	0.04	ENSRNOT00000079473 ENSRNOT00000027893	Ryr1 Links NCBI RGD Ensembl Show fit	ryanodine receptor 1
chr2_+_189997129 Show fit	0.03	ENSRNOT00000015958	S100a4 Links NCBI RGD Ensembl Show fit	S100 calcium-binding protein A4
chrX_+_33895769 Show fit	0.03	ENSRNOT00000085993 ENSRNOT00000079365	Reps2 Links NCBI RGD Ensembl Show fit	RALBP1 associated Eps domain containing protein 2
chr2_+_252263386 Show fit	0.03	ENSRNOT00000092913 ENSRNOT00000084034 ENSRNOT00000041186 ENSRNOT00000092931	Ssx2ip Links NCBI RGD Ensembl Show fit	SSX family member 2 interacting protein
chr13_-_49169918 Show fit	0.03	ENSRNOT00000000036	Tmcc2 Links NCBI RGD Ensembl Show fit	transmembrane and coiled-coil domain family 2
chr1_-_166037424 Show fit	0.03	ENSRNOT00000026115	P2ry2 Links NCBI RGD Ensembl Show fit	purinergic receptor P2Y2
chrX_+_136488691 Show fit	0.03	ENSRNOT00000093432	Arhgap36 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 36
chr14_-_72970329 Show fit	0.03	ENSRNOT00000006325	Pp2d1 Links NCBI RGD Ensembl Show fit	protein phosphatase 2C-like domain containing 1
chr7_-_101140308 Show fit	0.03	ENSRNOT00000006279	Fam84b Links NCBI RGD Ensembl Show fit	family with sequence similarity 84, member B
chrX_+_106791333 Show fit	0.03	ENSRNOT00000050302	Tceal9 Links NCBI RGD Ensembl Show fit	transcription elongation factor A like 9
chr10_+_14248710 Show fit	0.02	ENSRNOT00000020733	Spsb3 Links NCBI RGD Ensembl Show fit	splA/ryanodine receptor domain and SOCS box containing 3
chr19_-_37725623 Show fit	0.02	ENSRNOT00000024197	Gfod2 Links NCBI RGD Ensembl Show fit	glucose-fructose oxidoreductase domain containing 2
chr1_-_214414763 Show fit	0.02	ENSRNOT00000025240 ENSRNOT00000077776	LOC100911440 Links NCBI RGD Ensembl Show fit	mitochondrial glutamate carrier 1-like
chr1_+_185356975 Show fit	0.02	ENSRNOT00000086681	Plekha7 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing A7
chr11_-_39767802 Show fit	0.02	ENSRNOT00000072806	RGD1565472 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2310003P10
chr1_+_87066289 Show fit	0.02	ENSRNOT00000027645	Capn12 Links NCBI RGD Ensembl Show fit	calpain 12
chr4_+_24612205 Show fit	0.02	ENSRNOT00000057382	Ewsr1 Links NCBI RGD Ensembl Show fit	EWS RNA-binding protein 1
chr1_-_91588609 Show fit	0.02	ENSRNOT00000050931	Snrpg Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein polypeptide G
chr2_+_60461551 Show fit	0.02	ENSRNOT00000024557	Rad1 Links NCBI RGD Ensembl Show fit	RAD1 checkpoint DNA exonuclease
chr1_-_67065797 Show fit	0.02	ENSRNOT00000048152	Vom1r46 Links NCBI RGD Ensembl Show fit	vomeronasal 1 receptor 46
chr9_-_88534710 Show fit	0.02	ENSRNOT00000020880	Tm4sf20 Links NCBI RGD Ensembl Show fit	transmembrane 4 L six family member 20
chr10_-_94365049 Show fit	0.02	ENSRNOT00000011894	Strada Links NCBI RGD Ensembl Show fit	STE20-related kinase adaptor alpha
chr1_+_53174879 Show fit	0.02	ENSRNOT00000017601 ENSRNOT00000084628	Rnaset2 Links NCBI RGD Ensembl Show fit	ribonuclease T2
chr8_+_48569328 Show fit	0.02	ENSRNOT00000084030	Ccdc153 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 153
chr1_+_102017263 Show fit	0.02	ENSRNOT00000028680	Nomo1 Links NCBI RGD Ensembl Show fit	nodal modulator 1
chr7_+_64672722 Show fit	0.02	ENSRNOT00000064448 ENSRNOT00000005539	Grip1 Links NCBI RGD Ensembl Show fit	glutamate receptor interacting protein 1
chr10_-_5511955 Show fit	0.01	ENSRNOT00000039429	Atf7ip2 Links NCBI RGD Ensembl Show fit	activating transcription factor 7 interacting protein 2
chr1_-_20962526 Show fit	0.01	ENSRNOT00000061332 ENSRNOT00000017322 ENSRNOT00000017412 ENSRNOT00000079688 ENSRNOT00000017417	Epb41l2 Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1-like 2
chr4_-_117751329 Show fit	0.01	ENSRNOT00000080096	LOC100910829 Links NCBI RGD Ensembl Show fit	probable N-acetyltransferase CML2-like
chr1_+_102857251 Show fit	0.01	ENSRNOT00000087920	Gtf2h1 Links NCBI RGD Ensembl Show fit	general transcription factor IIH subunit 1
chr7_-_114573900 Show fit	0.01	ENSRNOT00000011219	Ptk2 Links NCBI RGD Ensembl Show fit	protein tyrosine kinase 2
chrX_+_40286592 Show fit	0.01	ENSRNOT00000087898	Mbtps2 Links NCBI RGD Ensembl Show fit	membrane-bound transcription factor peptidase, site 2
chr2_-_157759819 Show fit	0.01	ENSRNOT00000015763 ENSRNOT00000016016	LOC100909712 Links NCBI RGD Ensembl Show fit	cyclin-L1-like
chr3_+_59408546 Show fit	0.01	ENSRNOT00000031418	AABR07052523.1 Links NCBI RGD Ensembl Show fit
chr1_-_265542276 Show fit	0.01	ENSRNOT00000065172	Mgea5 Links NCBI RGD Ensembl Show fit	meningioma expressed antigen 5 (hyaluronidase)
chr3_+_56056925 Show fit	0.01	ENSRNOT00000088351 ENSRNOT00000010508	Klhl23 Links NCBI RGD Ensembl Show fit	kelch-like family member 23
chr10_-_18131562 Show fit	0.01	ENSRNOT00000006676	Tlx3 Links NCBI RGD Ensembl Show fit	T-cell leukemia, homeobox 3
chr3_+_139894331 Show fit	0.01	ENSRNOT00000064695	Rin2 Links NCBI RGD Ensembl Show fit	Ras and Rab interactor 2
chr7_-_12405022 Show fit	0.01	ENSRNOT00000021648	Cirbp Links NCBI RGD Ensembl Show fit	cold inducible RNA binding protein
chr10_-_88442796 Show fit	0.01	ENSRNOT00000077579 ENSRNOT00000023447 ENSRNOT00000043172	Acly Links NCBI RGD Ensembl Show fit	ATP citrate lyase
chrX_-_72133692 Show fit	0.01	ENSRNOT00000004263	Cited1 Links NCBI RGD Ensembl Show fit	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
chr5_-_88612626 Show fit	0.01	ENSRNOT00000089560	Tle1 Links NCBI RGD Ensembl Show fit	transducin like enhancer of split 1
chr9_-_40008680 Show fit	0.01	ENSRNOT00000016578	Khdrbs2 Links NCBI RGD Ensembl Show fit	KH RNA binding domain containing, signal transduction associated 2
chr17_-_12669573 Show fit	0.01	ENSRNOT00000016942 ENSRNOT00000041726	Syk Links NCBI RGD Ensembl Show fit	spleen associated tyrosine kinase
chr4_-_124048417 Show fit	0.01	ENSRNOT00000014933	Mrps25 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein S25
chr10_+_86303727 Show fit	0.01	ENSRNOT00000037752	Ppp1r1b Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory (inhibitor) subunit 1B
chr14_+_46649971 Show fit	0.01	ENSRNOT00000085875	AABR07015078.1 Links NCBI RGD Ensembl Show fit
chr7_-_136853154 Show fit	0.01	ENSRNOT00000087376	Nell2 Links NCBI RGD Ensembl Show fit	neural EGFL like 2
chr8_+_127171537 Show fit	0.01	ENSRNOT00000078625 ENSRNOT00000051290 ENSRNOT00000087753	Golga4 Links NCBI RGD Ensembl Show fit	golgin A4
chr14_+_83889089 Show fit	0.01	ENSRNOT00000078980	Morc2 Links NCBI RGD Ensembl Show fit	MORC family CW-type zinc finger 2
chr14_-_21299068 Show fit	0.00	ENSRNOT00000065778	Amtn Links NCBI RGD Ensembl Show fit	amelotin
chr4_+_44774741 Show fit	0.00	ENSRNOT00000086902	Met Links NCBI RGD Ensembl Show fit	MET proto-oncogene, receptor tyrosine kinase
chr6_-_146470456 Show fit	0.00	ENSRNOT00000018479	RGD1560883 Links NCBI RGD Ensembl Show fit	similar to KIAA0825 protein
chr1_-_90520344 Show fit	0.00	ENSRNOT00000078598	Kctd15 Links NCBI RGD Ensembl Show fit	potassium channel tetramerization domain containing 15
chr1_-_90520012 Show fit	0.00	ENSRNOT00000028698	Kctd15 Links NCBI RGD Ensembl Show fit	potassium channel tetramerization domain containing 15
chr1_-_274106502 Show fit	0.00	ENSRNOT00000020539	Smndc1 Links NCBI RGD Ensembl Show fit	survival motor neuron domain containing 1
chr18_-_79258570 Show fit	0.00	ENSRNOT00000022401	Galr1 Links NCBI RGD Ensembl Show fit	galanin receptor 1
chr1_-_170404056 Show fit	0.00	ENSRNOT00000024402	Apbb1 Links NCBI RGD Ensembl Show fit	amyloid beta precursor protein binding family B member 1
chr2_+_178679041 Show fit	0.00	ENSRNOT00000013524	Fam198b Links NCBI RGD Ensembl Show fit	family with sequence similarity 198, member B
chr14_+_100311173 Show fit	0.00	ENSRNOT00000031275	Ppp3r1 Links NCBI RGD Ensembl Show fit	protein phosphatase 3, regulatory subunit B, alpha
chr18_-_86279680 Show fit	0.00	ENSRNOT00000006169	LOC689166 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC689166
chr14_-_84334066 Show fit	0.00	ENSRNOT00000006160	Mtfp1 Links NCBI RGD Ensembl Show fit	mitochondrial fission process 1
chr5_-_50684409 Show fit	0.00	ENSRNOT00000013181	RGD1359108 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 3110043O21
chr2_+_142686724 Show fit	0.00	ENSRNOT00000014614	Proser1 Links NCBI RGD Ensembl Show fit	proline and serine rich 1
chr12_-_46809849 Show fit	0.00	ENSRNOT00000081134	Pxn Links NCBI RGD Ensembl Show fit	paxillin
chr7_-_18585313 Show fit	0.00	ENSRNOT00000010399	March2 Links NCBI RGD Ensembl Show fit	membrane associated ring-CH-type finger 2
chr9_+_65172194 Show fit	0.00	ENSRNOT00000040493	AC128084.1 Links NCBI RGD Ensembl Show fit
chr4_-_125929002 Show fit	0.00	ENSRNOT00000083271	Magi1 Links NCBI RGD Ensembl Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 1
chr1_+_250426158 Show fit	0.00	ENSRNOT00000067643	A1cf Links NCBI RGD Ensembl Show fit	APOBEC1 complementation factor
chr2_+_61991742 Show fit	0.00	ENSRNOT00000046715	LOC499544 Links NCBI RGD Ensembl Show fit	LRRGT00154
chrX_-_1952111 Show fit	0.00	ENSRNOT00000061140	Jade3 Links NCBI RGD Ensembl Show fit	jade family PHD finger 3
chrX_+_6791136 Show fit	0.00	ENSRNOT00000003984	LOC100909913 Links NCBI RGD Ensembl Show fit	norrin-like
chr8_-_68275720 Show fit	0.00	ENSRNOT00000079122	Map2k5 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase kinase 5
chr10_-_72417070 Show fit	0.00	ENSRNOT00000036814	Usp32 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 32
chr4_-_157230647 Show fit	0.00	ENSRNOT00000017334	Emg1 Links NCBI RGD Ensembl Show fit	EMG1 N1-specific pseudouridine methyltransferase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:2000342	negative regulation of chemokine (C-X-C motif) ligand 2 production(GO:2000342)
0.0	0.2	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.0	0.1	GO:1901492	neuropilin signaling pathway(GO:0038189) VEGF-activated neuropilin signaling pathway(GO:0038190) cardiac vascular smooth muscle cell development(GO:0060948) positive regulation of lymphangiogenesis(GO:1901492)
0.0	0.0	GO:0060084	synaptic transmission involved in micturition(GO:0060084)
0.0	0.1	GO:0007198	adenylate cyclase-inhibiting serotonin receptor signaling pathway(GO:0007198)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005968	Rab-protein geranylgeranyltransferase complex(GO:0005968)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0001010	transcription factor activity, sequence-specific DNA binding transcription factor recruiting(GO:0001010)
0.0	0.1	GO:0046920	alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.0	0.1	GO:0004663	Rab geranylgeranyltransferase activity(GO:0004663)
0.0	0.0	GO:1990269	RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)