GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Thrb Links NCBI RGD Ensembl	ENSRNOG00000006649	thyroid hormone receptor beta

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Thrb	rn6_v1_chr15_-_8914501_8914501	0.59	2.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_-_88135410 Show fit	0.40	ENSRNOT00000014180	Car3 Links NCBI RGD Ensembl Show fit	carbonic anhydrase 3
chr4_-_30276372 Show fit	0.09	ENSRNOT00000011823	Pon1 Links NCBI RGD Ensembl Show fit	paraoxonase 1
chr10_-_52483325 Show fit	0.08	ENSRNOT00000083485	AABR07029809.1 Links NCBI RGD Ensembl Show fit
chr1_+_88875375 Show fit	0.08	ENSRNOT00000028284	Tyrobp Links NCBI RGD Ensembl Show fit	Tyro protein tyrosine kinase binding protein
chr8_-_84506328 Show fit	0.08	ENSRNOT00000064754	Mlip Links NCBI RGD Ensembl Show fit	muscular LMNA-interacting protein
chr17_+_45175121 Show fit	0.07	ENSRNOT00000080417	Nkapl Links NCBI RGD Ensembl Show fit	NFKB activating protein-like
chr3_+_81294275 Show fit	0.07	ENSRNOT00000009068	RGD1563263 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1700029I15
chr3_+_148438939 Show fit	0.07	ENSRNOT00000064196	Ttll9 Links NCBI RGD Ensembl Show fit	tubulin tyrosine ligase like 9
chr10_+_108387789 Show fit	0.07	ENSRNOT00000084845	AABR07030901.1 Links NCBI RGD Ensembl Show fit
chr3_-_6626284 Show fit	0.06	ENSRNOT00000012494	Fcnb Links NCBI RGD Ensembl Show fit	ficolin B
chr14_+_43694183 Show fit	0.05	ENSRNOT00000046342	RGD1563570 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein S23
chr4_+_102147211 Show fit	0.05	ENSRNOT00000083239	AABR07060980.1 Links NCBI RGD Ensembl Show fit
chr4_-_157252104 Show fit	0.05	ENSRNOT00000082739	Ptpn6 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 6
chr3_-_4055806 Show fit	0.05	ENSRNOT00000026408	Agpat2 Links NCBI RGD Ensembl Show fit	1-acylglycerol-3-phosphate O-acyltransferase 2
chr9_+_17728816 Show fit	0.05	ENSRNOT00000065754	Capn11 Links NCBI RGD Ensembl Show fit	calpain 11
chr10_-_56962161 Show fit	0.05	ENSRNOT00000026038	Alox15 Links NCBI RGD Ensembl Show fit	arachidonate 15-lipoxygenase
chr2_-_209973205 Show fit	0.04	ENSRNOT00000024593	Cym Links NCBI RGD Ensembl Show fit	chymosin
chr15_-_45376324 Show fit	0.04	ENSRNOT00000076969	Dleu7 Links NCBI RGD Ensembl Show fit	deleted in lymphocytic leukemia, 7
chr5_+_34040258 Show fit	0.04	ENSRNOT00000009758	Ggh Links NCBI RGD Ensembl Show fit	gamma-glutamyl hydrolase
chr13_+_50977431 Show fit	0.04	ENSRNOT00000035658	Chit1 Links NCBI RGD Ensembl Show fit	chitinase 1
chr13_-_91776397 Show fit	0.04	ENSRNOT00000073147	Mptx1 Links NCBI RGD Ensembl Show fit	mucosal pentraxin 1
chr7_+_118712035 Show fit	0.03	ENSRNOT00000074245	LOC100911562 Links NCBI RGD Ensembl Show fit	apolipoprotein L3-like
chr8_+_111107358 Show fit	0.03	ENSRNOT00000011203	Anapc13 Links NCBI RGD Ensembl Show fit	anaphase promoting complex subunit 13
chr8_-_115358046 Show fit	0.03	ENSRNOT00000017607	Grm2 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 2
chr14_-_81053905 Show fit	0.03	ENSRNOT00000045068 ENSRNOT00000040215	Rgs12 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 12
chr3_-_26056818 Show fit	0.03	ENSRNOT00000044209	Lrp1b Links NCBI RGD Ensembl Show fit	LDL receptor related protein 1B
chr5_-_113939127 Show fit	0.03	ENSRNOT00000039554	Mysm1 Links NCBI RGD Ensembl Show fit	myb-like, SWIRM and MPN domains 1
chr1_-_170431073 Show fit	0.03	ENSRNOT00000024710	Hpx Links NCBI RGD Ensembl Show fit	hemopexin
chr8_+_115131367 Show fit	0.02	ENSRNOT00000014849	Rpl29 Links NCBI RGD Ensembl Show fit	ribosomal protein L29
chr1_-_78626284 Show fit	0.02	ENSRNOT00000052299	LOC108349752 Links NCBI RGD Ensembl Show fit	carcinoembryonic antigen-related cell adhesion molecule 3-like
chr12_+_50315933 Show fit	0.02	ENSRNOT00000000826	Srrd Links NCBI RGD Ensembl Show fit	SRR1 domain containing
chr4_-_157252565 Show fit	0.02	ENSRNOT00000079947	Ptpn6 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 6
chr16_+_4997461 Show fit	0.02	ENSRNOT00000071042	LOC102547963 Links NCBI RGD Ensembl Show fit	leucine-rich repeat and transmembrane domain-containing protein 1-like
chr7_-_98197087 Show fit	0.02	ENSRNOT00000010484 ENSRNOT00000079961	Klhl38 Links NCBI RGD Ensembl Show fit	kelch-like family member 38
chr13_+_93751759 Show fit	0.02	ENSRNOT00000065706	Wdr64 Links NCBI RGD Ensembl Show fit	WD repeat domain 64
chr3_-_160922341 Show fit	0.02	ENSRNOT00000029206	Tp53tg5 Links NCBI RGD Ensembl Show fit	TP53 target 5
chr4_+_52147641 Show fit	0.02	ENSRNOT00000009458	Hyal4 Links NCBI RGD Ensembl Show fit	hyaluronoglucosaminidase 4
chr1_-_216920625 Show fit	0.02	ENSRNOT00000028119	Osbpl5 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 5
chr5_+_133865331 Show fit	0.02	ENSRNOT00000035409	Tal1 Links NCBI RGD Ensembl Show fit	TAL bHLH transcription factor 1, erythroid differentiation factor
chr15_+_57290849 Show fit	0.02	ENSRNOT00000014909	Cpb2 Links NCBI RGD Ensembl Show fit	carboxypeptidase B2
chr1_-_222902320 Show fit	0.01	ENSRNOT00000059154	Lgals12 Links NCBI RGD Ensembl Show fit	galectin 12
chr5_+_163867961 Show fit	0.01	ENSRNOT00000081495	AABR07050399.1 Links NCBI RGD Ensembl Show fit
chr10_-_76263866 Show fit	0.01	ENSRNOT00000003219	Scpep1 Links NCBI RGD Ensembl Show fit	serine carboxypeptidase 1
chr3_+_7051695 Show fit	0.01	ENSRNOT00000013548	Mrps2 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein S2
chr10_+_31508512 Show fit	0.01	ENSRNOT00000031580	Fam71b Links NCBI RGD Ensembl Show fit	family with sequence similarity 71, member B
chr16_+_74865516 Show fit	0.01	ENSRNOT00000058072	Atp7b Links NCBI RGD Ensembl Show fit	ATPase copper transporting beta
chrX_-_153039372 Show fit	0.01	ENSRNOT00000085250	Pnma5 Links NCBI RGD Ensembl Show fit	paraneoplastic Ma antigen family member 5
chr10_-_88619537 Show fit	0.01	ENSRNOT00000055250	Kat2a Links NCBI RGD Ensembl Show fit	lysine acetyltransferase 2A
chr1_+_192933540 Show fit	0.01	ENSRNOT00000035770	Rbbp6 Links NCBI RGD Ensembl Show fit	RB binding protein 6, ubiquitin ligase
chr19_-_57422093 Show fit	0.01	ENSRNOT00000025512	RGD1559896 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2310022B05
chr10_-_45279299 Show fit	0.01	ENSRNOT00000073082	Rnf187 Links NCBI RGD Ensembl Show fit	ring finger protein 187
chr7_+_97778260 Show fit	0.01	ENSRNOT00000064264	Tbc1d31 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 31
chr7_+_35125424 Show fit	0.01	ENSRNOT00000085978 ENSRNOT00000010117	Ndufa12 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit A12
chr15_-_48284548 Show fit	0.00	ENSRNOT00000038336	Hmbox1 Links NCBI RGD Ensembl Show fit	homeobox containing 1
chr17_-_90522091 Show fit	0.00	ENSRNOT00000077767	Lyst Links NCBI RGD Ensembl Show fit	lysosomal trafficking regulator
chr1_+_219144205 Show fit	0.00	ENSRNOT00000083942	Unc93b1 Links NCBI RGD Ensembl Show fit	unc-93 homolog B1 (C. elegans)
chr3_+_138765027 Show fit	0.00	ENSRNOT00000055588	RGD1566320 Links NCBI RGD Ensembl Show fit	RGD1566320
chr10_-_110431792 Show fit	0.00	ENSRNOT00000054922	LOC619574 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC619574
chr4_-_162498052 Show fit	0.00	ENSRNOT00000066349	LOC100360260 Links NCBI RGD Ensembl Show fit	chromobox homolog 3-like

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002752	cell surface pattern recognition receptor signaling pathway(GO:0002752)
0.0	0.1	GO:0033277	abortive mitotic cell cycle(GO:0033277)
0.0	0.4	GO:0006730	one-carbon metabolic process(GO:0006730)
0.0	0.1	GO:2001204	regulation of osteoclast development(GO:2001204)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	GO:0016151	nickel cation binding(GO:0016151)
0.0	0.1	GO:0046573	lactonohydrolase activity(GO:0046573) acyl-L-homoserine-lactone lactonohydrolase activity(GO:0102007)
0.0	0.0	GO:0004052	arachidonate 12-lipoxygenase activity(GO:0004052)