GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nkx2-5 Links NCBI RGD Ensembl	ENSRNOG00000020747	NK2 homeobox 5

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr6_+_106153045 Show fit	0.10	ENSRNOT00000092065	Sipa1l1 Links NCBI RGD Ensembl Show fit	signal-induced proliferation-associated 1 like 1
chr5_-_83648044 Show fit	0.09	ENSRNOT00000046725	RGD1561195 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L31
chr12_-_19254527 Show fit	0.08	ENSRNOT00000089349	AABR07035541.3 Links NCBI RGD Ensembl Show fit
chr11_+_45888221 Show fit	0.06	ENSRNOT00000071932 ENSRNOT00000066008 ENSRNOT00000060802	Lnp1 Links NCBI RGD Ensembl Show fit	leukemia NUP98 fusion partner 1
chr13_-_107886476 Show fit	0.06	ENSRNOT00000077282	Kcnk2 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 2
chr9_-_60923706 Show fit	0.05	ENSRNOT00000047517	AABR07067749.1 Links NCBI RGD Ensembl Show fit
chr13_-_82005741 Show fit	0.05	ENSRNOT00000076404	Mettl11b Links NCBI RGD Ensembl Show fit	methyltransferase like 11B
chr15_-_14510828 Show fit	0.05	ENSRNOT00000039347	Sntn Links NCBI RGD Ensembl Show fit	sentan, cilia apical structure protein
chr5_+_164808323 Show fit	0.05	ENSRNOT00000011005	Nppa Links NCBI RGD Ensembl Show fit	natriuretic peptide A
chr1_+_87248489 Show fit	0.04	ENSRNOT00000028091	Dpf1 Links NCBI RGD Ensembl Show fit	double PHD fingers 1
chr11_-_61530567 Show fit	0.04	ENSRNOT00000076277	Naa50 Links NCBI RGD Ensembl Show fit	N(alpha)-acetyltransferase 50, NatE catalytic subunit
chr20_-_4390436 Show fit	0.04	ENSRNOT00000000497 ENSRNOT00000077655	Ppt2 Links NCBI RGD Ensembl Show fit	palmitoyl-protein thioesterase 2
chr6_+_57516713 Show fit	0.04	ENSRNOT00000063874	Dgkb Links NCBI RGD Ensembl Show fit	diacylglycerol kinase, beta
chr8_-_43480777 Show fit	0.04	ENSRNOT00000060074	LOC688473 Links NCBI RGD Ensembl Show fit	similar to 40S ribosomal protein S2
chr10_-_43512287 Show fit	0.03	ENSRNOT00000036481	Faxdc2 Links NCBI RGD Ensembl Show fit	fatty acid hydroxylase domain containing 2
chr2_-_198458041 Show fit	0.03	ENSRNOT00000082450	Fcgr1a Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor Ia
chr14_-_114047527 Show fit	0.03	ENSRNOT00000083199	AABR07016779.1 Links NCBI RGD Ensembl Show fit
chr10_+_49472460 Show fit	0.03	ENSRNOT00000038276	Tekt3 Links NCBI RGD Ensembl Show fit	tektin 3
chr16_-_64806050 Show fit	0.03	ENSRNOT00000015725	Dusp26 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 26
chr12_-_13462038 Show fit	0.03	ENSRNOT00000043110	LOC100360439 Links NCBI RGD Ensembl Show fit	ribosomal protein L36-like
chr7_-_35550247 Show fit	0.03	ENSRNOT00000049211	Rpl31l3 Links NCBI RGD Ensembl Show fit	ribosomal protein L31-like 3
chr10_-_65820538 Show fit	0.03	ENSRNOT00000011808	Tmem97 Links NCBI RGD Ensembl Show fit	transmembrane protein 97
chr7_-_120558805 Show fit	0.03	ENSRNOT00000087344	Pla2g6 Links NCBI RGD Ensembl Show fit	phospholipase A2 group VI
chr7_-_120559157 Show fit	0.03	ENSRNOT00000090565 ENSRNOT00000016827 ENSRNOT00000017108	Pla2g6 Links NCBI RGD Ensembl Show fit	phospholipase A2 group VI
chr10_-_83655182 Show fit	0.03	ENSRNOT00000007897	Abi3 Links NCBI RGD Ensembl Show fit	ABI family, member 3
chr8_-_53758774 Show fit	0.03	ENSRNOT00000068040	Ankk1 Links NCBI RGD Ensembl Show fit	ankyrin repeat and kinase domain containing 1
chr2_-_185444897 Show fit	0.03	ENSRNOT00000016329	Rps3a Links NCBI RGD Ensembl Show fit	ribosomal protein S3a
chr6_+_115170865 Show fit	0.03	ENSRNOT00000005671	Tshr Links NCBI RGD Ensembl Show fit	thyroid stimulating hormone receptor
chr18_+_56071478 Show fit	0.03	ENSRNOT00000025344 ENSRNOT00000025354	Cd74 Links NCBI RGD Ensembl Show fit	CD74 molecule
chr7_-_119797098 Show fit	0.02	ENSRNOT00000009994	Rac2 Links NCBI RGD Ensembl Show fit	ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)
chr16_+_49185560 Show fit	0.02	ENSRNOT00000014360	Helt Links NCBI RGD Ensembl Show fit	helt bHLH transcription factor
chr14_-_85088523 Show fit	0.02	ENSRNOT00000010690	Nf2 Links NCBI RGD Ensembl Show fit	neurofibromin 2
chr9_+_44567206 Show fit	0.02	ENSRNOT00000088544	NEWGENE_1308196 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L30
chr2_-_23260965 Show fit	0.02	ENSRNOT00000046772	LOC103691423 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L36 pseudogene
chr2_+_252452269 Show fit	0.02	ENSRNOT00000021970	Uox Links NCBI RGD Ensembl Show fit	urate oxidase
chr5_-_32956159 Show fit	0.02	ENSRNOT00000078264	Cnbd1 Links NCBI RGD Ensembl Show fit	cyclic nucleotide binding domain containing 1
chr9_-_10182676 Show fit	0.02	ENSRNOT00000074894	LOC316124 Links NCBI RGD Ensembl Show fit	similar to gonadotropin-regulated long chain acyl-CoA synthetase
chr5_-_155709215 Show fit	0.02	ENSRNOT00000018118	Cdc42 Links NCBI RGD Ensembl Show fit	cell division cycle 42
chr16_-_18819833 Show fit	0.02	ENSRNOT00000072664	F2rl3 Links NCBI RGD Ensembl Show fit	F2R like thrombin/trypsin receptor 3
chr17_-_36438752 Show fit	0.02	ENSRNOT00000048997	RGD1561310 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L37
chr12_-_19159901 Show fit	0.01	ENSRNOT00000045401	Rpl31l4 Links NCBI RGD Ensembl Show fit	ribosomal protein L31-like 4
chr5_-_78393143 Show fit	0.01	ENSRNOT00000043610	LOC100910017 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L31-like
chr16_+_50049828 Show fit	0.01	ENSRNOT00000034448	Fam149a Links NCBI RGD Ensembl Show fit	family with sequence similarity 149, member A
chr7_+_107467260 Show fit	0.01	ENSRNOT00000009240 ENSRNOT00000077382	Tg Links NCBI RGD Ensembl Show fit	thyroglobulin
chr9_+_4817854 Show fit	0.01	ENSRNOT00000040879	LOC100910526 Links NCBI RGD Ensembl Show fit	sulfotransferase 1C2-like
chr2_-_252451999 Show fit	0.01	ENSRNOT00000021861	Dnase2b Links NCBI RGD Ensembl Show fit	deoxyribonuclease 2 beta
chr1_+_61132818 Show fit	0.01	ENSRNOT00000041434	Vom1r20 Links NCBI RGD Ensembl Show fit	vomeronasal 1 receptor 20
chr1_-_89258935 Show fit	0.01	ENSRNOT00000003180	LOC100361079 Links NCBI RGD Ensembl Show fit	ribosomal protein L36-like
chr5_+_58937615 Show fit	0.01	ENSRNOT00000080909	Tesk1 Links NCBI RGD Ensembl Show fit	testis-specific kinase 1
chr6_+_58388333 Show fit	0.01	ENSRNOT00000036337	LOC680646 Links NCBI RGD Ensembl Show fit	similar to 40S ribosomal protein S2
chr10_-_53595827 Show fit	0.01	ENSRNOT00000004560	Adprm Links NCBI RGD Ensembl Show fit	ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent
chr15_+_23777856 Show fit	0.01	ENSRNOT00000060847	Samd4a Links NCBI RGD Ensembl Show fit	sterile alpha motif domain containing 4A
chrX_+_37329779 Show fit	0.01	ENSRNOT00000038352 ENSRNOT00000088802	Pdha1 Links NCBI RGD Ensembl Show fit	pyruvate dehydrogenase (lipoamide) alpha 1
chr20_-_4391402 Show fit	0.01	ENSRNOT00000090518 ENSRNOT00000083489	Ppt2 Links NCBI RGD Ensembl Show fit	palmitoyl-protein thioesterase 2
chr17_+_36956385 Show fit	0.01	ENSRNOT00000024854	Cdkal1 Links NCBI RGD Ensembl Show fit	CDK5 regulatory subunit associated protein 1-like 1
chr6_+_128973956 Show fit	0.01	ENSRNOT00000075399	Fam181a Links NCBI RGD Ensembl Show fit	family with sequence similarity 181, member A
chr10_-_44147035 Show fit	0.01	ENSRNOT00000041113	Olr1424 Links NCBI RGD Ensembl Show fit	olfactory receptor 1424
chr7_-_143473697 Show fit	0.01	ENSRNOT00000055336 ENSRNOT00000083027	Krt77 Links NCBI RGD Ensembl Show fit	keratin 77
chr20_+_5527181 Show fit	0.01	ENSRNOT00000091364	Phf1 Links NCBI RGD Ensembl Show fit	PHD finger protein 1
chr8_-_48850671 Show fit	0.01	ENSRNOT00000016580	Cxcr5 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine receptor 5
chr14_-_45165207 Show fit	0.01	ENSRNOT00000002960	Klf3 Links NCBI RGD Ensembl Show fit	Kruppel like factor 3
chr10_+_104523996 Show fit	0.01	ENSRNOT00000065339 ENSRNOT00000086747	Itgb4 Links NCBI RGD Ensembl Show fit	integrin subunit beta 4
chr1_-_166912524 Show fit	0.00	ENSRNOT00000092952	Inppl1 Links NCBI RGD Ensembl Show fit	inositol polyphosphate phosphatase-like 1
chr3_-_166994286 Show fit	0.00	ENSRNOT00000081593	Zfp217 Links NCBI RGD Ensembl Show fit	zinc finger protein 217
chr1_-_141470380 Show fit	0.00	ENSRNOT00000065759	Plin1 Links NCBI RGD Ensembl Show fit	perilipin 1
chrX_+_20216587 Show fit	0.00	ENSRNOT00000073114	AABR07037412.2 Links NCBI RGD Ensembl Show fit	FYVE, RhoGEF and PH domain-containing protein 1
chr8_-_40122450 Show fit	0.00	ENSRNOT00000039729	Tbrg1 Links NCBI RGD Ensembl Show fit	transforming growth factor beta regulator 1
chr14_+_82769642 Show fit	0.00	ENSRNOT00000065393	Ctbp1 Links NCBI RGD Ensembl Show fit	C-terminal binding protein 1
chr5_-_151029233 Show fit	0.00	ENSRNOT00000089155	Ppp1r8 Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 8
chr3_+_33440191 Show fit	0.00	ENSRNOT00000034632 ENSRNOT00000092907	Mbd5 Links NCBI RGD Ensembl Show fit	methyl-CpG binding domain protein 5
chr10_+_53595854 Show fit	0.00	ENSRNOT00000044116	Sco1 Links NCBI RGD Ensembl Show fit	SCO1 cytochrome c oxidase assembly protein
chr19_+_38189605 Show fit	0.00	ENSRNOT00000000275	Prmt7 Links NCBI RGD Ensembl Show fit	protein arginine methyltransferase 7
chr3_-_166993940 Show fit	0.00	ENSRNOT00000034669	Zfp217 Links NCBI RGD Ensembl Show fit	zinc finger protein 217
chr17_-_69711689 Show fit	0.00	ENSRNOT00000041925	Akr1c12 Links NCBI RGD Ensembl Show fit	aldo-keto reductase family 1, member C12

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1900039	positive regulation of cellular response to hypoxia(GO:1900039)
0.0	0.1	GO:0006480	N-terminal protein amino acid methylation(GO:0006480)
0.0	0.0	GO:1902304	positive regulation of potassium ion export(GO:1902304)
0.0	0.1	GO:0035965	cardiolipin acyl-chain remodeling(GO:0035965)
0.0	0.0	GO:0001788	antibody-dependent cellular cytotoxicity(GO:0001788)
0.0	0.0	GO:1902310	positive regulation of peptidyl-serine dephosphorylation(GO:1902310)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0071885	N-terminal protein N-methyltransferase activity(GO:0071885)
0.0	0.1	GO:0022841	potassium ion leak channel activity(GO:0022841)
0.0	0.0	GO:0004647	phosphoserine phosphatase activity(GO:0004647)