ISMARA results: Cebpa

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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Cebpa_Cebpg

Z-value: 0.39

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Transcription factors associated with Cebpa_Cebpg

Gene Symbol	Gene ID	Gene Info
Cebpa NCBI RGD Ensembl	ENSRNOG00000010918	CCAAT/enhancer binding protein alpha
Cebpg NCBI RGD Ensembl	ENSRNOG00000021144	CCAAT/enhancer binding protein gamma

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Cebpa	rn6_v1_chr1_+_91363492_91363492	0.69	2.0e-01	Click!
Cebpg	rn6_v1_chr1_-_91296656_91296656	-0.26	6.7e-01	Click!

Activity profile of Cebpa_Cebpg motif

Sorted Z-values of Cebpa_Cebpg motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_227657983 Show fit	0.20	ENSRNOT00000021116	Prss12 NCBI RGD Ensembl Show fit	protease, serine 12
chr2_+_158097843 Show fit	0.18	ENSRNOT00000016541	Ptx3 NCBI RGD Ensembl Show fit	pentraxin 3
chr1_-_168972725 Show fit	0.17	ENSRNOT00000090422	Hbb NCBI RGD Ensembl Show fit	hemoglobin subunit beta
chr1_+_91152635 Show fit	0.17	ENSRNOT00000073438	LOC100912070 NCBI RGD Ensembl Show fit	dermokine-like
chr1_+_168964202 Show fit	0.15	ENSRNOT00000089102	LOC103694855 NCBI RGD Ensembl Show fit	hemoglobin subunit beta-2-like
chr9_+_23354770 Show fit	0.10	ENSRNOT00000081459	Cenpq NCBI RGD Ensembl Show fit	centromere protein Q
chr11_-_81444375 Show fit	0.10	ENSRNOT00000058479 ENSRNOT00000078131 ENSRNOT00000080949 ENSRNOT00000080562 ENSRNOT00000084867	Kng1 NCBI RGD Ensembl Show fit	kininogen 1
chr10_+_55940533 Show fit	0.09	ENSRNOT00000012061	RGD1563441 NCBI RGD Ensembl Show fit	similar to RIKEN cDNA A030009H04
chr5_+_64294321 Show fit	0.08	ENSRNOT00000083796	Msantd3 NCBI RGD Ensembl Show fit	Myb/SANT DNA binding domain containing 3
chrX_-_138118696 Show fit	0.08	ENSRNOT00000084130	Frmd7 NCBI RGD Ensembl Show fit	FERM domain containing 7

Showing 1 to 10 of 129 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Cebpa_Cebpg

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0052422	modulation of catalytic activity in other organism involved in symbiotic interaction(GO:0052203) modulation by host of symbiont catalytic activity(GO:0052422) regulation of exo-alpha-sialidase activity(GO:1903015)
0.0	0.2	GO:0010999	regulation of eIF2 alpha phosphorylation by heme(GO:0010999)
0.0	0.2	GO:1903575	cornified envelope assembly(GO:1903575)
0.0	0.2	GO:0015671	oxygen transport(GO:0015671)
0.0	0.1	GO:0001905	activation of membrane attack complex(GO:0001905) regulation of activation of membrane attack complex(GO:0001969)
0.0	0.0	GO:0072209	metanephric mesangial cell differentiation(GO:0072209) metanephric glomerular mesangial cell differentiation(GO:0072254)
0.0	0.0	GO:0032916	positive regulation of transforming growth factor beta3 production(GO:0032916)
0.0	0.0	GO:0033364	mast cell secretory granule organization(GO:0033364)
0.0	0.0	GO:0055129	L-proline biosynthetic process(GO:0055129)

Showing 1 to 9 of 9 entries

Gene overrepresentation in cellular component category:

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Total log-likelihood	Term	Description
0.2	GO:0031838	haptoglobin-hemoglobin complex(GO:0031838)
0.2	GO:0005833	hemoglobin complex(GO:0005833)
0.2	GO:0043083	synaptic cleft(GO:0043083)
0.0	GO:1990589	ATF4-CREB1 transcription factor complex(GO:1990589)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0031720	haptoglobin binding(GO:0031720)
0.0	0.2	GO:0001849	complement component C1q binding(GO:0001849)
0.0	0.2	GO:0005344	oxygen transporter activity(GO:0005344)
0.0	0.1	GO:0031714	C5a anaphylatoxin chemotactic receptor binding(GO:0031714)
0.0	0.1	GO:0035614	snRNA stem-loop binding(GO:0035614)
0.0	0.1	GO:0046790	virion binding(GO:0046790)
0.0	0.0	GO:0004698	calcium-dependent protein kinase C activity(GO:0004698)
0.0	0.0	GO:1990763	arrestin family protein binding(GO:1990763)
0.0	0.0	GO:0005294	neutral L-amino acid secondary active transmembrane transporter activity(GO:0005294)
0.0	0.0	GO:0004735	pyrroline-5-carboxylate reductase activity(GO:0004735)

Showing 1 to 10 of 10 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME OPSINS	Genes involved in Opsins

Showing 1 to 1 of 1 entries

Results for Cebpa_Cebpg

Z-value: 0.39

Motif logo

Transcription factors associated with Cebpa_Cebpg

Activity-expression correlation:

Activity profile of Cebpa_Cebpg motif

Sorted Z-values of Cebpa_Cebpg motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Cebpa_Cebpg

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: