GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Klf7 Links NCBI RGD Ensembl	ENSRNOG00000046242	Kruppel like factor 7
Klf7 Links NCBI RGD Ensembl	ENSRNOG00000012961	Kruppel like factor 7

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Klf7	rn6_v1_chr9_-_70787913_70787913	0.23	7.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_56962161 Show fit	0.15	ENSRNOT00000026038	Alox15 Links NCBI RGD Ensembl Show fit	arachidonate 15-lipoxygenase
chr1_-_37818879 Show fit	0.07	ENSRNOT00000043747	LOC680200 Links NCBI RGD Ensembl Show fit	similar to zinc finger protein 455
chr18_+_55505993 Show fit	0.07	ENSRNOT00000043736	RGD1309362 Links NCBI RGD Ensembl Show fit	similar to interferon-inducible GTPase
chr10_-_38985466 Show fit	0.06	ENSRNOT00000010121	Il13 Links NCBI RGD Ensembl Show fit	interleukin 13
chr3_-_165039707 Show fit	0.06	ENSRNOT00000081648	Kcng1 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel modifier subfamily G member 1
chr2_+_195719543 Show fit	0.06	ENSRNOT00000028324	Celf3 Links NCBI RGD Ensembl Show fit	CUGBP, Elav-like family member 3
chr1_+_162320730 Show fit	0.06	ENSRNOT00000035743	Kctd21 Links NCBI RGD Ensembl Show fit	potassium channel tetramerization domain containing 21
chr12_-_17972737 Show fit	0.05	ENSRNOT00000001783	Fam20c Links NCBI RGD Ensembl Show fit	FAM20C, golgi associated secretory pathway kinase
chr16_-_47207487 Show fit	0.05	ENSRNOT00000059459	Dctd Links NCBI RGD Ensembl Show fit	dCMP deaminase
chr12_+_2170630 Show fit	0.05	ENSRNOT00000071928	Pet100 Links NCBI RGD Ensembl Show fit	PET100 homolog
chr10_+_86819929 Show fit	0.05	ENSRNOT00000038228	Cdc6 Links NCBI RGD Ensembl Show fit	cell division cycle 6
chr3_-_13435979 Show fit	0.05	ENSRNOT00000029600	Pbx3 Links NCBI RGD Ensembl Show fit	PBX homeobox 3
chr18_-_31136200 Show fit	0.04	ENSRNOT00000084438 ENSRNOT00000080097	Arap3 Links NCBI RGD Ensembl Show fit	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
chr4_-_182844291 Show fit	0.04	ENSRNOT00000064320	Tmtc1 Links NCBI RGD Ensembl Show fit	transmembrane and tetratricopeptide repeat containing 1
chr7_-_27240528 Show fit	0.04	ENSRNOT00000029435 ENSRNOT00000079731	Hsp90b1 Links NCBI RGD Ensembl Show fit	heat shock protein 90 beta family member 1
chr10_+_86819472 Show fit	0.04	ENSRNOT00000081424	Cdc6 Links NCBI RGD Ensembl Show fit	cell division cycle 6
chr8_-_115626380 Show fit	0.04	ENSRNOT00000019107	Manf Links NCBI RGD Ensembl Show fit	mesencephalic astrocyte-derived neurotrophic factor
chr9_-_98597359 Show fit	0.04	ENSRNOT00000027506	Per2 Links NCBI RGD Ensembl Show fit	period circadian clock 2
chr10_-_13619935 Show fit	0.04	ENSRNOT00000064392	Ccnf Links NCBI RGD Ensembl Show fit	cyclin F
chr7_+_27240876 Show fit	0.04	ENSRNOT00000091725	LOC362863 Links NCBI RGD Ensembl Show fit	first gene upstream of Nt5dc3
chr17_+_45175121 Show fit	0.04	ENSRNOT00000080417	Nkapl Links NCBI RGD Ensembl Show fit	NFKB activating protein-like
chr4_-_171176581 Show fit	0.04	ENSRNOT00000030850	Rerg Links NCBI RGD Ensembl Show fit	RAS-like, estrogen-regulated, growth-inhibitor
chr1_-_199655147 Show fit	0.03	ENSRNOT00000026979	LOC103691238 Links NCBI RGD Ensembl Show fit	zinc finger protein 239-like
chr1_+_196095214 Show fit	0.03	ENSRNOT00000080741	LOC691716 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein S15a
chr10_+_65805860 Show fit	0.03	ENSRNOT00000011795	Ift20 Links NCBI RGD Ensembl Show fit	intraflagellar transport 20
chr3_+_13838304 Show fit	0.03	ENSRNOT00000025067	Hspa5 Links NCBI RGD Ensembl Show fit	heat shock protein family A member 5
chr10_+_58613674 Show fit	0.03	ENSRNOT00000010975	Fam64a Links NCBI RGD Ensembl Show fit	family with sequence similarity 64, member A
chr7_-_145450233 Show fit	0.03	ENSRNOT00000092974 ENSRNOT00000021523	Calcoco1 Links NCBI RGD Ensembl Show fit	calcium binding and coiled coil domain 1
chr13_+_49870976 Show fit	0.03	ENSRNOT00000090170	Pik3c2b Links NCBI RGD Ensembl Show fit	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
chr8_-_115145810 Show fit	0.03	ENSRNOT00000079470	Abhd14a Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 14A
chr2_+_150211898 Show fit	0.03	ENSRNOT00000018767	Sucnr1 Links NCBI RGD Ensembl Show fit	succinate receptor 1
chr10_-_25890639 Show fit	0.03	ENSRNOT00000085499	Hmmr Links NCBI RGD Ensembl Show fit	hyaluronan-mediated motility receptor
chr7_-_134722215 Show fit	0.03	ENSRNOT00000036750	Prickle1 Links NCBI RGD Ensembl Show fit	prickle planar cell polarity protein 1
chr3_+_150055749 Show fit	0.03	ENSRNOT00000055335	Actl10 Links NCBI RGD Ensembl Show fit	actin-like 10
chr10_+_67762995 Show fit	0.02	ENSRNOT00000000253	Zfp207 Links NCBI RGD Ensembl Show fit	zinc finger protein 207
chr7_-_140640953 Show fit	0.02	ENSRNOT00000083156	Tuba1a Links NCBI RGD Ensembl Show fit	tubulin, alpha 1A
chr1_-_100810522 Show fit	0.02	ENSRNOT00000027260	Atf5 Links NCBI RGD Ensembl Show fit	activating transcription factor 5
chr2_+_113984824 Show fit	0.02	ENSRNOT00000086399	Tnik Links NCBI RGD Ensembl Show fit	TRAF2 and NCK interacting kinase
chr1_-_153740905 Show fit	0.02	ENSRNOT00000023239	Prss23 Links NCBI RGD Ensembl Show fit	protease, serine, 23
chr10_-_89225297 Show fit	0.02	ENSRNOT00000027868 ENSRNOT00000082010	Becn1 Links NCBI RGD Ensembl Show fit	beclin 1
chr4_-_28310178 Show fit	0.02	ENSRNOT00000084021	RGD1563091 Links NCBI RGD Ensembl Show fit	similar to OEF2
chr4_-_150616895 Show fit	0.02	ENSRNOT00000073562	Ankrd26 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 26
chr20_-_8202924 Show fit	0.02	ENSRNOT00000071399	Tmem217 Links NCBI RGD Ensembl Show fit	transmembrane protein 217
chr1_+_213991620 Show fit	0.02	ENSRNOT00000038691	Rplp2 Links NCBI RGD Ensembl Show fit	ribosomal protein lateral stalk subunit P2
chr10_-_65805693 Show fit	0.02	ENSRNOT00000012245	Tnfaip1 Links NCBI RGD Ensembl Show fit	TNF alpha induced protein 1
chr8_-_114449956 Show fit	0.02	ENSRNOT00000056414	Col6a6 Links NCBI RGD Ensembl Show fit	collagen type VI alpha 6 chain
chr10_-_15211325 Show fit	0.02	ENSRNOT00000027083	Rhot2 Links NCBI RGD Ensembl Show fit	ras homolog family member T2
chr9_-_65329066 Show fit	0.02	ENSRNOT00000018284	Ppil3 Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase like 3
chr11_-_67618704 Show fit	0.02	ENSRNOT00000042208	Ccdc58 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 58
chr2_+_113984646 Show fit	0.02	ENSRNOT00000016799	Tnik Links NCBI RGD Ensembl Show fit	TRAF2 and NCK interacting kinase
chr5_+_126254142 Show fit	0.02	ENSRNOT00000057471	Pars2 Links NCBI RGD Ensembl Show fit	prolyl-tRNA synthetase 2, mitochondrial (putative)
chr10_-_65437143 Show fit	0.02	ENSRNOT00000017264	Nek8 Links NCBI RGD Ensembl Show fit	NIMA-related kinase 8
chr2_+_12102487 Show fit	0.02	ENSRNOT00000089209 ENSRNOT00000072155	LOC100912538 Links NCBI RGD Ensembl Show fit	centrin-3-like
chr10_-_88645364 Show fit	0.02	ENSRNOT00000030344	Rab5c Links NCBI RGD Ensembl Show fit	RAB5C, member RAS oncogene family
chr8_+_128806129 Show fit	0.02	ENSRNOT00000025225	Rpsa Links NCBI RGD Ensembl Show fit	ribosomal protein SA
chr20_+_5125679 Show fit	0.02	ENSRNOT00000060832	Bag6 Links NCBI RGD Ensembl Show fit	BCL2-associated athanogene 6
chr3_-_152259156 Show fit	0.02	ENSRNOT00000065729	LOC100910882 Links NCBI RGD Ensembl Show fit	RNA-binding protein 39-like
chr18_+_55391388 Show fit	0.02	ENSRNOT00000071612	LOC100910934 Links NCBI RGD Ensembl Show fit	interferon-inducible GTPase 1-like
chr10_-_49192693 Show fit	0.02	ENSRNOT00000004294	Zfp286a Links NCBI RGD Ensembl Show fit	zinc finger protein 286A
chr1_+_214428526 Show fit	0.01	ENSRNOT00000057030	LOC100911575 Links NCBI RGD Ensembl Show fit	60S acidic ribosomal protein P2-like
chr1_-_228263198 Show fit	0.01	ENSRNOT00000028572	Olr1874 Links NCBI RGD Ensembl Show fit	olfactory receptor 1874
chr20_+_3422461 Show fit	0.01	ENSRNOT00000084917 ENSRNOT00000079854	Tubb5 Links NCBI RGD Ensembl Show fit	tubulin, beta 5 class I
chr8_-_77992621 Show fit	0.01	ENSRNOT00000085843	Myzap Links NCBI RGD Ensembl Show fit	myocardial zonula adherens protein
chr13_-_87847263 Show fit	0.01	ENSRNOT00000003650	Nuf2 Links NCBI RGD Ensembl Show fit	NUF2, NDC80 kinetochore complex component
chr4_-_120817377 Show fit	0.01	ENSRNOT00000021826	Podxl2 Links NCBI RGD Ensembl Show fit	podocalyxin-like 2
chr12_+_22026075 Show fit	0.01	ENSRNOT00000029041	LOC100910838 Links NCBI RGD Ensembl Show fit	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1-like
chr1_-_199716205 Show fit	0.01	ENSRNOT00000027290	RGD1310127 Links NCBI RGD Ensembl Show fit	similar to cDNA sequence BC017158
chr14_-_34218961 Show fit	0.01	ENSRNOT00000072588	LOC686911 Links NCBI RGD Ensembl Show fit	similar to Exocyst complex component 1 (Exocyst complex component Sec3)
chr7_-_144322240 Show fit	0.01	ENSRNOT00000089290	LOC100912282 Links NCBI RGD Ensembl Show fit	calcium-binding and coiled-coil domain-containing protein 1-like
chr3_-_151724654 Show fit	0.01	ENSRNOT00000026964	Rbm39 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 39
chr18_+_59748444 Show fit	0.01	ENSRNOT00000024752	St8sia3 Links NCBI RGD Ensembl Show fit	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
chr10_-_25847994 Show fit	0.01	ENSRNOT00000082076	Mat2b Links NCBI RGD Ensembl Show fit	methionine adenosyltransferase 2B
chr5_+_48561339 Show fit	0.01	ENSRNOT00000010614 ENSRNOT00000091827	Rngtt Links NCBI RGD Ensembl Show fit	RNA guanylyltransferase and 5'-phosphatase
chr9_-_82419288 Show fit	0.01	ENSRNOT00000004797	Tuba4a Links NCBI RGD Ensembl Show fit	tubulin, alpha 4A
chr7_+_12179203 Show fit	0.01	ENSRNOT00000049170	Mbd3 Links NCBI RGD Ensembl Show fit	methyl-CpG binding domain protein 3
chr1_-_226630900 Show fit	0.01	ENSRNOT00000028092	Tmem138 Links NCBI RGD Ensembl Show fit	transmembrane protein 138
chr6_+_86713604 Show fit	0.01	ENSRNOT00000059271	Fam179b Links NCBI RGD Ensembl Show fit	family with sequence similarity 179, member B
chr5_-_25721072 Show fit	0.01	ENSRNOT00000021839	Tmem67 Links NCBI RGD Ensembl Show fit	transmembrane protein 67
chr1_+_56242346 Show fit	0.01	ENSRNOT00000019317	Smoc2 Links NCBI RGD Ensembl Show fit	SPARC related modular calcium binding 2
chr17_-_62462644 Show fit	0.01	ENSRNOT00000024545	Ccny Links NCBI RGD Ensembl Show fit	cyclin Y
chr19_-_28296640 Show fit	0.01	ENSRNOT00000041115 ENSRNOT00000042781	AABR07043429.1 Links NCBI RGD Ensembl Show fit
chr6_-_7741414 Show fit	0.01	ENSRNOT00000038246	Thada Links NCBI RGD Ensembl Show fit	THADA, armadillo repeat containing
chr7_-_130176696 Show fit	0.01	ENSRNOT00000051347	Dennd6b Links NCBI RGD Ensembl Show fit	DENN domain containing 6B
chr3_-_153398789 Show fit	0.01	ENSRNOT00000055219	Mroh8 Links NCBI RGD Ensembl Show fit	maestro heat-like repeat family member 8
chr17_-_71897972 Show fit	0.01	ENSRNOT00000065942	Sfmbt2 Links NCBI RGD Ensembl Show fit	Scm-like with four mbt domains 2
chr8_+_72029489 Show fit	0.01	ENSRNOT00000089336	Herc1 Links NCBI RGD Ensembl Show fit	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
chrX_+_120859968 Show fit	0.00	ENSRNOT00000085185	Wdr44 Links NCBI RGD Ensembl Show fit	WD repeat domain 44
chr14_-_33560503 Show fit	0.00	ENSRNOT00000002862	Srp72 Links NCBI RGD Ensembl Show fit	signal recognition particle 72
chrX_+_120860178 Show fit	0.00	ENSRNOT00000088661	Wdr44 Links NCBI RGD Ensembl Show fit	WD repeat domain 44
chr1_-_86948845 Show fit	0.00	ENSRNOT00000027212	Nfkbib Links NCBI RGD Ensembl Show fit	NFKB inhibitor beta
chr12_-_38274036 Show fit	0.00	ENSRNOT00000063990	Kntc1 Links NCBI RGD Ensembl Show fit	kinetochore associated 1
chr4_+_82776746 Show fit	0.00	ENSRNOT00000011371	Tax1bp1 Links NCBI RGD Ensembl Show fit	Tax1 binding protein 1
chr14_+_17531398 Show fit	0.00	ENSRNOT00000050038	Cdkl2 Links NCBI RGD Ensembl Show fit	cyclin dependent kinase like 2
chr10_-_15161938 Show fit	0.00	ENSRNOT00000026641	Fam173a Links NCBI RGD Ensembl Show fit	family with sequence similarity 173, member A
chr13_-_78521911 Show fit	0.00	ENSRNOT00000087506	Rabgap1l Links NCBI RGD Ensembl Show fit	RAB GTPase activating protein 1-like
chr8_+_128577080 Show fit	0.00	ENSRNOT00000024172	Wdr48 Links NCBI RGD Ensembl Show fit	WD repeat domain 48
chr3_-_79743737 Show fit	0.00	ENSRNOT00000013584	Ptpmt1 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, mitochondrial 1
chr6_+_86713803 Show fit	0.00	ENSRNOT00000005861	Fam179b Links NCBI RGD Ensembl Show fit	family with sequence similarity 179, member B
chr20_-_2040422 Show fit	0.00	ENSRNOT00000052311	RT1-M5 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus M5
chr4_+_7835949 Show fit	0.00	ENSRNOT00000065962	Tomm7 Links NCBI RGD Ensembl Show fit	translocase of outer mitochondrial membrane 7
chr10_+_25890943 Show fit	0.00	ENSRNOT00000086814	Nudcd2 Links NCBI RGD Ensembl Show fit	NudC domain containing 2
chrX_+_6430594 Show fit	0.00	ENSRNOT00000044009	Maob Links NCBI RGD Ensembl Show fit	monoamine oxidase B
chr1_-_167308827 Show fit	0.00	ENSRNOT00000027590 ENSRNOT00000027575	Nup98 Links NCBI RGD Ensembl Show fit	nucleoporin 98
chr19_-_29802083 Show fit	0.00	ENSRNOT00000024755	AC123471.1 Links NCBI RGD Ensembl Show fit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0051122	hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122)
0.0	0.1	GO:0033861	negative regulation of NAD(P)H oxidase activity(GO:0033861) negative regulation of complement-dependent cytotoxicity(GO:1903660)
0.0	0.1	GO:0071895	odontoblast differentiation(GO:0071895) dentinogenesis(GO:0097187)
0.0	0.0	GO:0051933	amino acid neurotransmitter reuptake(GO:0051933) glutamate reuptake(GO:0051935)
0.0	0.1	GO:1904117	cellular response to vasopressin(GO:1904117)
0.0	0.0	GO:0021577	hindbrain structural organization(GO:0021577) cerebellum structural organization(GO:0021589)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0004052	arachidonate 12-lipoxygenase activity(GO:0004052)