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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Atoh1_Bhlhe23

Z-value: 0.56

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Transcription factors associated with Atoh1_Bhlhe23

Gene Symbol Gene ID Gene Info
Atoh1
ENSRNOG00000006383 atonal bHLH transcription factor 1
Bhlhe23
ENSRNOG00000010312 basic helix-loop-helix family, member e23

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Atoh1rn6_v1_chr4_+_95498003_954980030.885.1e-02Click!
Bhlhe23rn6_v1_chr3_-_176282211_1762822110.691.9e-01Click!

Activity profile of Atoh1_Bhlhe23 motif

Sorted Z-values of Atoh1_Bhlhe23 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr3_-_66417741 0.75 ENSRNOT00000007662
Neurod1
neuronal differentiation 1
chr10_-_63952726 0.33 ENSRNOT00000090461
Doc2b
double C2 domain beta
chr8_+_69971778 0.26 ENSRNOT00000058007
ENSRNOT00000037941
ENSRNOT00000050649
Megf11
multiple EGF-like-domains 11
chr7_-_114848414 0.26 ENSRNOT00000032620
Slc45a4
solute carrier family 45, member 4
chr5_-_12563429 0.23 ENSRNOT00000059625
St18
suppression of tumorigenicity 18
chr8_-_63750531 0.20 ENSRNOT00000009496
Neo1
neogenin 1
chr4_-_31730386 0.20 ENSRNOT00000013817
Slc25a13
solute carrier family 25 member 13
chr7_-_117978787 0.19 ENSRNOT00000074262
Zfp647
zinc finger protein 647
chr3_-_66335869 0.17 ENSRNOT00000079781
ENSRNOT00000043238
ENSRNOT00000073412
ENSRNOT00000057878
ENSRNOT00000079212
Cerkl
ceramide kinase-like
chr5_-_12526962 0.17 ENSRNOT00000092104
St18
suppression of tumorigenicity 18
chr2_-_177924970 0.17 ENSRNOT00000029340
Rapgef2
Rap guanine nucleotide exchange factor 2
chr10_+_74959285 0.16 ENSRNOT00000010296
Rnf43
ring finger protein 43
chr10_-_45297385 0.16 ENSRNOT00000041187
Hist3h2bb
histone cluster 3 H2B family member b
chr2_+_196334626 0.15 ENSRNOT00000050914
ENSRNOT00000028645
ENSRNOT00000090729
Sema6c
semaphorin 6C
chr6_+_60566196 0.15 ENSRNOT00000006709
ENSRNOT00000075193
Dock4
dedicator of cytokinesis 4
chr10_-_56530842 0.15 ENSRNOT00000077451
AABR07029863.3

chr4_-_81241152 0.13 ENSRNOT00000015325
ENSRNOT00000015152
Hnrnpa2b1
heterogeneous nuclear ribonucleoprotein A2/B1
chr6_+_52663112 0.13 ENSRNOT00000013842
Atxn7l1
ataxin 7-like 1
chr3_+_145764932 0.12 ENSRNOT00000075257
AABR07054264.1

chr3_+_40038336 0.12 ENSRNOT00000048804
Galnt13
polypeptide N-acetylgalactosaminyltransferase 13
chr2_+_207930796 0.11 ENSRNOT00000047827
Kcnd3
potassium voltage-gated channel subfamily D member 3
chr4_-_130659697 0.11 ENSRNOT00000072374
LOC100363436
rCG56280-like
chr10_-_47724499 0.11 ENSRNOT00000085011
Rnf112
ring finger protein 112
chrX_-_76708878 0.10 ENSRNOT00000045534
Atrx
ATRX, chromatin remodeler
chr17_+_66548818 0.10 ENSRNOT00000024361
Anlnl1
anillin, actin binding protein-like 1
chr13_-_88642011 0.09 ENSRNOT00000067037
LOC100361087
hypothetical LOC100361087
chr3_+_172155496 0.09 ENSRNOT00000066279
Stx16
syntaxin 16
chr9_+_16302578 0.09 ENSRNOT00000021762
Gltscr1l
GLTSCR1-like
chr10_-_16046033 0.08 ENSRNOT00000089460
Cpeb4
cytoplasmic polyadenylation element binding protein 4
chr19_+_20147037 0.08 ENSRNOT00000020028
Zfp423
zinc finger protein 423
chr10_-_16045835 0.08 ENSRNOT00000064832
Cpeb4
cytoplasmic polyadenylation element binding protein 4
chr9_-_81586116 0.08 ENSRNOT00000089952
Tmbim1
transmembrane BAX inhibitor motif containing 1
chr9_+_51298426 0.08 ENSRNOT00000065212
Gulp1
GULP, engulfment adaptor PTB domain containing 1
chr5_+_98469047 0.07 ENSRNOT00000041374
Lurap1l
leucine rich adaptor protein 1-like
chr11_+_9642365 0.07 ENSRNOT00000087080
ENSRNOT00000042384
Robo1
roundabout guidance receptor 1
chr3_+_128756799 0.07 ENSRNOT00000049855
ENSRNOT00000042853
Plcb4
phospholipase C, beta 4
chrX_-_76924362 0.07 ENSRNOT00000078997
Atrx
ATRX, chromatin remodeler
chr7_-_118518193 0.07 ENSRNOT00000075636
LOC102555083
zinc finger protein 250-like
chr6_-_10515370 0.07 ENSRNOT00000020845
Atp6v1e2
ATPase H+ transporting V1 subunit E2
chr20_+_6211420 0.07 ENSRNOT00000000624
Kctd20
potassium channel tetramerization domain containing 20
chr3_+_45683993 0.06 ENSRNOT00000038983
Tanc1
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
chr1_-_198577226 0.06 ENSRNOT00000055013
Spn
sialophorin
chr20_-_5212624 0.06 ENSRNOT00000074261
LOC103689996
antigen peptide transporter 2
chr2_+_123617794 0.06 ENSRNOT00000080632
RGD1307100
similar to RIKEN cDNA D630029K19
chr2_+_196594303 0.06 ENSRNOT00000064442
ENSRNOT00000044738
Arnt
aryl hydrocarbon receptor nuclear translocator
chr10_+_84182118 0.06 ENSRNOT00000011027
Hoxb3
homeo box B3
chr2_-_118989127 0.06 ENSRNOT00000014871
Gnb4
G protein subunit beta 4
chr5_+_58636083 0.06 ENSRNOT00000067281
Unc13b
unc-13 homolog B
chr2_+_122368265 0.06 ENSRNOT00000078321
Atp11b
ATPase phospholipid transporting 11B (putative)
chr6_-_76552559 0.05 ENSRNOT00000065230
Ralgapa1
Ral GTPase activating protein catalytic alpha subunit 1
chr16_-_32753278 0.05 ENSRNOT00000015759
Mfap3l
microfibrillar-associated protein 3-like
chr9_+_16508799 0.05 ENSRNOT00000021803
Rpl7l1
ribosomal protein L7-like 1
chr6_-_44363915 0.04 ENSRNOT00000085925
Id2
inhibitor of DNA binding 2, HLH protein
chr1_+_213451721 0.04 ENSRNOT00000045652
Olr315
olfactory receptor 315
chr4_-_170783725 0.04 ENSRNOT00000072528
Wbp11
WW domain binding protein 11
chr6_-_110681408 0.04 ENSRNOT00000078265
Angel1
angel homolog 1
chr3_-_38090526 0.03 ENSRNOT00000059430
Cacnb4
calcium voltage-gated channel auxiliary subunit beta 4
chr16_+_35573058 0.03 ENSRNOT00000059580
Galntl6
polypeptide N-acetylgalactosaminyltransferase-like 6
chr10_+_19366793 0.03 ENSRNOT00000050610
Fam196b
family with sequence similarity 196, member B
chr1_+_199351628 0.03 ENSRNOT00000078578
Bckdk
branched chain ketoacid dehydrogenase kinase
chr1_-_189181901 0.03 ENSRNOT00000092022
Gp2
glycoprotein 2
chr14_-_3300200 0.03 ENSRNOT00000037931
Btbd8
BTB (POZ) domain containing 8
chr2_+_40554146 0.03 ENSRNOT00000015138
Pde4d
phosphodiesterase 4D
chr7_+_125576327 0.03 ENSRNOT00000016679
Prr5
proline rich 5
chr17_+_30556884 0.02 ENSRNOT00000080929
ENSRNOT00000022022
Eci2
enoyl-CoA delta isomerase 2
chr15_+_43905099 0.02 ENSRNOT00000016568
Ebf2
early B-cell factor 2
chr3_+_172195844 0.02 ENSRNOT00000034915
Npepl1
aminopeptidase-like 1
chr17_+_87274944 0.02 ENSRNOT00000073718
Etl4
enhancer trap locus 4
chr3_-_145810834 0.02 ENSRNOT00000075429
LOC102555217
zinc finger protein 120-like
chr18_+_60392376 0.02 ENSRNOT00000023890
Nedd4l
neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
chr10_+_69737328 0.02 ENSRNOT00000055999
ENSRNOT00000076773
Tmem132e
transmembrane protein 132E
chr13_+_67611708 0.02 ENSRNOT00000063833
Tpr
translocated promoter region, nuclear basket protein
chr13_+_49005405 0.01 ENSRNOT00000092560
ENSRNOT00000076457
Lemd1
LEM domain containing 1
chr11_+_72705129 0.01 ENSRNOT00000073330
Apod
apolipoprotein D
chr2_+_38230757 0.01 ENSRNOT00000048598
RGD1564606
similar to 60S ribosomal protein L23a
chr2_-_210088949 0.01 ENSRNOT00000070994
Rbm15
RNA binding motif protein 15
chr16_+_23447366 0.01 ENSRNOT00000068629
Psd3
pleckstrin and Sec7 domain containing 3
chr8_-_48634797 0.01 ENSRNOT00000012868
Hinfp
histone H4 transcription factor
chr14_+_110676090 0.01 ENSRNOT00000029513
Fancl
Fanconi anemia, complementation group L
chr19_-_22632071 0.01 ENSRNOT00000077275
Gpt2
glutamic--pyruvic transaminase 2
chr10_+_59725398 0.00 ENSRNOT00000026156
P2rx5
purinergic receptor P2X 5
chr18_+_70192493 0.00 ENSRNOT00000020472
Cxxc1
CXXC finger protein 1
chr16_-_71237118 0.00 ENSRNOT00000066974
Nsd3
nuclear receptor binding SET domain protein 3
chr2_-_149444548 0.00 ENSRNOT00000018600
P2ry12
purinergic receptor P2Y12
chr16_-_21380331 0.00 ENSRNOT00000015247
Atp13a1
ATPase 13A1
chr7_-_107391184 0.00 ENSRNOT00000056793
Tmem71
transmembrane protein 71
chr7_+_13673934 0.00 ENSRNOT00000048564
Olr1085
olfactory receptor 1085
chrX_+_24891156 0.00 ENSRNOT00000071173
Wwc3
WWC family member 3
chr1_+_17602281 0.00 ENSRNOT00000075461
LOC103690149
jouberin-like
chr20_+_3309899 0.00 ENSRNOT00000001049
Abcf1
ATP binding cassette subfamily F member 1

Network of associatons between targets according to the STRING database.

First level regulatory network of Atoh1_Bhlhe23

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0060729 intestinal epithelial structure maintenance(GO:0060729)
0.1 0.3 GO:0015770 disaccharide transport(GO:0015766) sucrose transport(GO:0015770) oligosaccharide transport(GO:0015772)
0.1 0.2 GO:1901581 post-embryonic appendage morphogenesis(GO:0035120) post-embryonic limb morphogenesis(GO:0035127) post-embryonic forelimb morphogenesis(GO:0035128) telomeric repeat-containing RNA transcription(GO:0097393) telomeric repeat-containing RNA transcription from RNA pol II promoter(GO:0097394) regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901580) negative regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901581) positive regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901582)
0.1 0.2 GO:1904694 negative regulation of vascular smooth muscle contraction(GO:1904694)
0.0 0.2 GO:0043490 malate-aspartate shuttle(GO:0043490)
0.0 0.2 GO:0048022 negative regulation of melanin biosynthetic process(GO:0048022) negative regulation of secondary metabolite biosynthetic process(GO:1900377)
0.0 0.1 GO:0044806 G-quadruplex DNA unwinding(GO:0044806)
0.0 0.1 GO:0021836 chemorepulsion involved in postnatal olfactory bulb interneuron migration(GO:0021836)
0.0 0.3 GO:0031340 positive regulation of vesicle fusion(GO:0031340)
0.0 0.0 GO:1902044 regulation of Fas signaling pathway(GO:1902044)
0.0 0.2 GO:2000766 negative regulation of cytoplasmic translation(GO:2000766)
0.0 0.1 GO:0001806 type IV hypersensitivity(GO:0001806) negative regulation of hypersensitivity(GO:0002884)
0.0 0.0 GO:0001966 thigmotaxis(GO:0001966)
0.0 0.1 GO:0021615 glossopharyngeal nerve morphogenesis(GO:0021615)
0.0 0.1 GO:0010808 positive regulation of synaptic vesicle priming(GO:0010808)
0.0 0.2 GO:0048681 negative regulation of axon regeneration(GO:0048681)
0.0 0.3 GO:0010842 retina layer formation(GO:0010842)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:1990421 subtelomeric heterochromatin(GO:1990421) nuclear subtelomeric heterochromatin(GO:1990707)
0.0 0.1 GO:0071598 neuronal ribonucleoprotein granule(GO:0071598)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0015154 sucrose:proton symporter activity(GO:0008506) sucrose transmembrane transporter activity(GO:0008515) disaccharide transmembrane transporter activity(GO:0015154) oligosaccharide transmembrane transporter activity(GO:0015157)
0.0 0.1 GO:0001069 regulatory region RNA binding(GO:0001069)
0.0 0.2 GO:0015183 L-aspartate transmembrane transporter activity(GO:0015183)
0.0 0.2 GO:0001729 ceramide kinase activity(GO:0001729)
0.0 0.2 GO:0015616 DNA translocase activity(GO:0015616)
0.0 0.2 GO:0031697 beta-1 adrenergic receptor binding(GO:0031697)
0.0 0.1 GO:0005250 A-type (transient outward) potassium channel activity(GO:0005250)
0.0 0.2 GO:0039706 co-receptor binding(GO:0039706)
0.0 0.1 GO:0004874 aryl hydrocarbon receptor activity(GO:0004874)
0.0 0.8 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 0.1 GO:0015440 peptide-transporting ATPase activity(GO:0015440)
0.0 0.2 GO:0030215 semaphorin receptor binding(GO:0030215)
0.0 0.2 GO:0000900 translation repressor activity, nucleic acid binding(GO:0000900)
0.0 0.1 GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity(GO:0004653)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS Genes involved in Regulation of gene expression in beta cells